Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46831 * 180.02562 * 4 3 2 6 6 C 1.36713 * 119.99965 * 263.79766 * 5 4 3 7 7 H 1.08000 * 120.00583 * 136.11191 * 6 5 4 8 8 C 1.39162 * 120.00106 * 316.11399 * 6 5 4 9 9 N 1.31296 * 119.99655 * 0.75152 * 8 6 5 10 10 Si 1.86793 * 120.00381 * 180.75309 * 8 6 5 11 11 H 1.48509 * 109.47055 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47426 * 119.99899 * 10 8 6 13 13 H 1.48506 * 109.47066 * 239.99905 * 10 8 6 14 14 C 1.34770 * 120.00151 * 83.79962 * 5 4 3 15 15 O 1.21594 * 120.00394 * 5.77942 * 14 5 4 16 16 C 1.47755 * 120.00235 * 185.77373 * 14 5 4 17 17 C 1.39341 * 120.21287 * 301.30678 * 16 14 5 18 18 C 1.38137 * 119.99180 * 180.02562 * 17 16 14 19 19 C 1.38419 * 120.41604 * 359.97438 * 18 17 16 20 20 C 1.38184 * 120.42664 * 359.97438 * 19 18 17 21 21 C 1.39243 * 119.99844 * 0.02990 * 20 19 18 22 22 C 1.47879 * 120.20568 * 179.97438 * 21 20 19 23 23 N 1.34776 * 119.99921 * 3.37701 * 22 21 20 24 24 O 1.21549 * 119.99633 * 183.37841 * 22 21 20 25 25 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47112 * 299.99703 * 1 2 3 27 27 H 1.09002 * 109.47079 * 59.99692 * 1 2 3 28 28 H 1.09006 * 109.47206 * 239.99833 * 2 1 3 29 29 H 1.09002 * 109.47079 * 120.00308 * 2 1 3 30 30 H 1.08995 * 109.46794 * 60.00102 * 3 2 1 31 31 H 1.09002 * 109.47304 * 300.00170 * 3 2 1 32 32 H 1.09001 * 109.46871 * 60.00067 * 4 3 2 33 33 H 1.08997 * 109.46728 * 300.00059 * 4 3 2 34 34 H 0.97000 * 119.99936 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.99956 * 359.97438 * 17 16 14 36 36 H 1.07996 * 119.79570 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.79236 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.99738 * 179.74064 * 20 19 18 39 39 H 0.96996 * 119.99660 * 0.02562 * 23 22 21 40 40 H 0.96997 * 119.99337 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4063 3.4262 -1.1769 7 1 4.0964 4.4414 -1.3761 8 6 5.1598 2.7314 -2.1182 9 7 5.5241 1.4922 -1.8823 10 14 5.6532 3.5617 -3.7170 11 1 5.1214 4.9481 -3.7395 12 1 7.1342 3.5973 -3.8200 13 1 5.0955 2.7995 -4.8632 14 6 4.1646 3.5003 1.1606 15 8 3.9564 2.9336 2.2161 16 6 4.5342 4.9308 1.1507 17 6 5.7376 5.3402 0.5798 18 6 6.0789 6.6787 0.5735 19 6 5.2317 7.6205 1.1313 20 6 4.0336 7.2339 1.7010 21 6 3.6722 5.8893 1.7171 22 6 2.3915 5.4703 2.3261 23 7 1.5389 6.3969 2.8068 24 8 2.1077 4.2903 2.3933 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 6.0496 1.0080 -2.5383 35 1 6.4038 4.6108 0.1431 36 1 7.0126 6.9924 0.1306 37 1 5.5083 8.6645 1.1204 38 1 3.3797 7.9741 2.1380 39 1 1.7652 7.3385 2.7529 40 1 0.6986 6.1220 3.2059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148529267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -49.370778 kcal Electronic energy + Delta-G solvation = -23930.669527 eV Core-core repulsion = 20517.258256 eV Total energy + Delta-G solvation = -3413.411271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90124 -38.11750 -37.35435 -35.07201 -33.81141 -33.38707 -31.42482 -30.70162 -30.50188 -28.10816 -24.87135 -24.12835 -23.08291 -21.97376 -20.36773 -20.10944 -19.16628 -18.04558 -16.91656 -16.39489 -15.80603 -15.05621 -14.74507 -14.52204 -14.47126 -14.30210 -13.93582 -13.89034 -13.50646 -13.01253 -12.74002 -12.50313 -12.10602 -12.00148 -11.78609 -11.54977 -11.28113 -11.17546 -10.94348 -10.90071 -10.44335 -10.36587 -10.15032 -10.08287 -9.57518 -9.35742 -9.30238 -8.95778 -8.58990 -8.49526 -8.22965 -7.29832 -6.23692 -4.08045 1.23430 1.67113 3.11169 3.20906 3.24104 3.36386 3.83142 4.01127 4.13320 4.35246 4.85192 5.02546 5.08160 5.16717 5.32568 5.62956 5.65175 5.67934 5.82509 5.83997 5.97001 6.21026 6.28800 6.37212 6.38894 6.52202 6.60435 6.65428 6.76102 6.84297 6.89449 6.96452 7.08439 7.13427 7.24802 7.36184 7.43073 7.66654 7.77108 8.13376 8.51659 8.72607 9.14066 9.63864 10.09767 10.71823 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.008561 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.359013 B = 3269.897950 C = 5220.565752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.437 5.437 6 C -0.326 4.326 7 H 0.082 0.918 8 C 0.043 3.957 9 N -0.867 5.867 10 Si 0.912 3.088 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.519 3.481 15 O -0.563 6.563 16 C -0.019 4.019 17 C -0.074 4.074 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.102 4.102 21 C -0.118 4.118 22 C 0.546 3.454 23 N -0.862 5.862 24 O -0.488 6.488 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.046 0.954 34 H 0.268 0.732 35 H 0.140 0.860 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.394 0.606 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 10.043 2.394 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.168 4.168 4 C -0.009 4.009 5 N -0.156 5.156 6 C -0.455 4.455 7 H 0.100 0.900 8 C -0.162 4.162 9 N -0.505 5.505 10 Si 0.739 3.261 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.206 1.206 14 C 0.306 3.694 15 O -0.445 6.445 16 C -0.024 4.024 17 C -0.092 4.092 18 C -0.126 4.126 19 C -0.149 4.149 20 C -0.121 4.121 21 C -0.122 4.122 22 C 0.331 3.669 23 N -0.428 5.428 24 O -0.361 6.361 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.222 0.778 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.190 8.713 2.759 9.680 hybrid contribution 0.005 0.957 -0.866 1.291 sum -3.185 9.670 1.892 10.355 Atomic orbital electron populations 1.21748 0.96896 1.00400 1.01383 1.21409 0.94747 0.98025 1.01365 1.21924 0.98335 0.95137 1.01366 1.21603 0.90708 0.84684 1.03912 1.43166 1.56034 1.11945 1.04456 1.19406 1.31594 0.99565 0.94937 0.90005 1.25508 0.95312 0.95693 0.99665 1.69637 1.35643 1.09513 1.35706 0.86078 0.78546 0.79702 0.81774 1.19163 1.20488 1.20632 1.18112 0.80798 0.85721 0.84753 1.90658 1.53464 1.69236 1.31130 1.20264 0.93625 0.94987 0.93483 1.21423 0.96102 0.95988 0.95712 1.21268 0.99493 0.93124 0.98741 1.21027 0.94655 0.99340 0.99902 1.21040 0.97172 0.94060 0.99803 1.19847 0.95574 0.93499 1.03290 1.18395 0.84195 0.85914 0.78379 1.43755 1.23237 1.09808 1.66012 1.91012 1.75027 1.16084 1.53956 0.93604 0.93125 0.93222 0.92403 0.92560 0.92343 0.92995 0.86308 0.93548 0.92077 0.84216 0.85757 0.86011 0.86146 0.77757 0.77050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.12 -2.22 5.93 -26.73 -0.16 -2.38 16 3 C -0.13 -2.95 5.49 -26.73 -0.15 -3.10 16 4 C 0.11 2.93 4.89 -4.04 -0.02 2.91 16 5 N -0.44 -11.58 2.53 -115.93 -0.29 -11.87 16 6 C -0.33 -8.38 7.29 -15.03 -0.11 -8.49 16 7 H 0.08 2.09 7.23 -52.49 -0.38 1.71 16 8 C 0.04 1.08 5.33 -17.44 -0.09 0.99 16 9 N -0.87 -22.75 10.80 55.51 0.60 -22.16 16 10 Si 0.91 19.35 29.55 -169.99 -5.02 14.33 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 C 0.52 13.70 5.70 -12.37 -0.07 13.63 16 15 O -0.56 -16.41 14.39 -18.80 -0.27 -16.68 16 16 C -0.02 -0.43 4.82 -104.63 -0.50 -0.94 16 17 C -0.07 -1.43 8.35 -39.21 -0.33 -1.76 16 18 C -0.11 -1.63 10.03 -39.55 -0.40 -2.03 16 19 C -0.13 -1.73 10.03 -39.53 -0.40 -2.13 16 20 C -0.10 -1.44 9.53 -39.23 -0.37 -1.81 16 21 C -0.12 -2.24 5.90 -104.61 -0.62 -2.85 16 22 C 0.55 10.53 8.01 -12.31 -0.10 10.44 16 23 N -0.86 -11.07 8.82 30.54 0.27 -10.80 16 24 O -0.49 -11.94 13.75 -18.76 -0.26 -12.20 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.12 3.16 5.26 -51.93 -0.27 2.89 16 33 H 0.05 1.25 7.54 -51.93 -0.39 0.86 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.14 2.86 7.65 -52.49 -0.40 2.45 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.19 6.42 -52.49 -0.34 0.86 16 39 H 0.39 3.61 6.88 -40.82 -0.28 3.33 16 40 H 0.40 4.50 8.93 -40.82 -0.36 4.14 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -33.41 333.70 -8.26 -41.67 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.37 Total: 12.20 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.94 Total: 0.47 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.58 Total: -44.82 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.53 Total: -28.88 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.41 -8.26 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148529267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.703 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds