Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46831 * 180.02562 * 4 3 2 6 6 C 1.36713 * 119.99965 * 263.79766 * 5 4 3 7 7 H 1.08000 * 120.00583 * 136.11191 * 6 5 4 8 8 C 1.39162 * 120.00106 * 316.11399 * 6 5 4 9 9 N 1.31296 * 119.99655 * 0.75152 * 8 6 5 10 10 Si 1.86793 * 120.00381 * 180.75309 * 8 6 5 11 11 H 1.48509 * 109.47055 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47426 * 119.99899 * 10 8 6 13 13 H 1.48506 * 109.47066 * 239.99905 * 10 8 6 14 14 C 1.34770 * 120.00151 * 83.79962 * 5 4 3 15 15 O 1.21594 * 120.00394 * 5.77942 * 14 5 4 16 16 C 1.47755 * 120.00235 * 185.77373 * 14 5 4 17 17 C 1.39341 * 120.21287 * 301.30678 * 16 14 5 18 18 C 1.38137 * 119.99180 * 180.02562 * 17 16 14 19 19 C 1.38419 * 120.41604 * 359.97438 * 18 17 16 20 20 C 1.38184 * 120.42664 * 359.97438 * 19 18 17 21 21 C 1.39243 * 119.99844 * 0.02990 * 20 19 18 22 22 C 1.47879 * 120.20568 * 179.97438 * 21 20 19 23 23 N 1.34776 * 119.99921 * 3.37701 * 22 21 20 24 24 O 1.21549 * 119.99633 * 183.37841 * 22 21 20 25 25 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47112 * 299.99703 * 1 2 3 27 27 H 1.09002 * 109.47079 * 59.99692 * 1 2 3 28 28 H 1.09006 * 109.47206 * 239.99833 * 2 1 3 29 29 H 1.09002 * 109.47079 * 120.00308 * 2 1 3 30 30 H 1.08995 * 109.46794 * 60.00102 * 3 2 1 31 31 H 1.09002 * 109.47304 * 300.00170 * 3 2 1 32 32 H 1.09001 * 109.46871 * 60.00067 * 4 3 2 33 33 H 1.08997 * 109.46728 * 300.00059 * 4 3 2 34 34 H 0.97000 * 119.99936 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.99956 * 359.97438 * 17 16 14 36 36 H 1.07996 * 119.79570 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.79236 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.99738 * 179.74064 * 20 19 18 39 39 H 0.96996 * 119.99660 * 0.02562 * 23 22 21 40 40 H 0.96997 * 119.99337 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4063 3.4262 -1.1769 7 1 4.0964 4.4414 -1.3761 8 6 5.1598 2.7314 -2.1182 9 7 5.5241 1.4922 -1.8823 10 14 5.6532 3.5617 -3.7170 11 1 5.1214 4.9481 -3.7395 12 1 7.1342 3.5973 -3.8200 13 1 5.0955 2.7995 -4.8632 14 6 4.1646 3.5003 1.1606 15 8 3.9564 2.9336 2.2161 16 6 4.5342 4.9308 1.1507 17 6 5.7376 5.3402 0.5798 18 6 6.0789 6.6787 0.5735 19 6 5.2317 7.6205 1.1313 20 6 4.0336 7.2339 1.7010 21 6 3.6722 5.8893 1.7171 22 6 2.3915 5.4703 2.3261 23 7 1.5389 6.3969 2.8068 24 8 2.1077 4.2903 2.3933 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 6.0496 1.0080 -2.5383 35 1 6.4038 4.6108 0.1431 36 1 7.0126 6.9924 0.1306 37 1 5.5083 8.6645 1.1204 38 1 3.3797 7.9741 2.1380 39 1 1.7652 7.3385 2.7529 40 1 0.6986 6.1220 3.2059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148529267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -72.092306 kcal Electronic energy + Delta-G solvation = -23931.654806 eV Core-core repulsion = 20517.258256 eV Total energy + Delta-G solvation = -3414.396550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42853 -39.87975 -38.80736 -37.01163 -35.58006 -34.76417 -33.38141 -32.12018 -31.78731 -29.81665 -26.83355 -25.63801 -24.53203 -23.50230 -22.01164 -21.62866 -20.98371 -19.60858 -18.39365 -17.79785 -17.66971 -16.59281 -16.43948 -16.16482 -16.04302 -15.84557 -15.52703 -15.45342 -15.10309 -14.48080 -14.33740 -14.09427 -13.75479 -13.72779 -13.26152 -13.10014 -12.91259 -12.81623 -12.74328 -12.25491 -12.09098 -12.05002 -11.92546 -11.80480 -11.45326 -11.04137 -10.83550 -10.62411 -10.31965 -9.88015 -9.72994 -9.33702 -8.18411 -6.10179 -0.11771 0.37819 1.43072 1.45774 1.59230 1.97913 2.20871 2.32513 2.58624 2.88928 3.03939 3.21451 3.95573 3.98196 4.03732 4.07082 4.22432 4.28606 4.36347 4.53237 4.55206 4.58309 4.83884 4.88131 4.90371 4.98340 5.02732 5.10642 5.16741 5.32262 5.34272 5.41585 5.44893 5.52528 5.57900 5.68152 5.94341 6.01290 6.14517 6.51219 6.54162 7.15497 7.44255 7.65322 8.13246 8.79524 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.008561 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.359013 B = 3269.897950 C = 5220.565752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.112 4.112 4 C 0.116 3.884 5 N -0.451 5.451 6 C -0.336 4.336 7 H 0.081 0.919 8 C 0.001 3.999 9 N -0.901 5.901 10 Si 0.985 3.015 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.279 1.279 14 C 0.508 3.492 15 O -0.609 6.609 16 C -0.067 4.067 17 C -0.095 4.095 18 C -0.096 4.096 19 C -0.109 4.109 20 C -0.083 4.083 21 C -0.140 4.140 22 C 0.537 3.463 23 N -0.828 5.828 24 O -0.556 6.556 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.016 0.984 34 H 0.272 0.728 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.416 0.584 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 14.195 1.327 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.150 4.150 4 C -0.007 4.007 5 N -0.170 5.170 6 C -0.464 4.464 7 H 0.099 0.901 8 C -0.200 4.200 9 N -0.539 5.539 10 Si 0.807 3.193 11 H -0.179 1.179 12 H -0.198 1.198 13 H -0.205 1.205 14 C 0.298 3.702 15 O -0.494 6.494 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.126 4.126 20 C -0.101 4.101 21 C -0.144 4.144 22 C 0.322 3.678 23 N -0.395 5.395 24 O -0.434 6.434 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.196 0.804 38 H 0.190 0.810 39 H 0.249 0.751 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.270 12.945 1.700 13.459 hybrid contribution 0.055 -0.205 -0.450 0.498 sum -3.214 12.740 1.250 13.198 Atomic orbital electron populations 1.21689 0.94110 1.02412 1.01475 1.21393 0.97165 0.94979 1.01602 1.21736 0.96301 0.97610 0.99385 1.21520 0.92470 0.84974 1.01742 1.43427 1.56315 1.12019 1.05216 1.19523 1.32309 0.99648 0.94891 0.90106 1.26364 0.94702 0.96063 1.02908 1.69757 1.36228 1.10906 1.37051 0.84996 0.78274 0.79027 0.76963 1.17911 1.19770 1.20506 1.18896 0.79578 0.87894 0.83856 1.90581 1.55395 1.70946 1.32525 1.20084 0.96256 0.92947 0.97831 1.21290 0.95147 0.97919 0.97000 1.21682 1.01058 0.91098 0.97598 1.21680 0.92917 1.01492 0.96533 1.21602 0.98124 0.92369 0.98022 1.20040 0.95259 0.95232 1.03864 1.18738 0.85070 0.85767 0.78202 1.43398 1.22331 1.10058 1.63687 1.90992 1.76470 1.19024 1.56922 0.90584 0.93637 0.92550 0.91581 0.92877 0.95326 0.93585 0.87174 0.96563 0.91807 0.86990 0.82174 0.80352 0.81011 0.75089 0.75885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.11 -4.46 5.93 30.59 0.18 -4.28 16 3 C -0.11 -5.50 5.49 30.60 0.17 -5.33 16 4 C 0.12 6.50 4.89 86.38 0.42 6.92 16 5 N -0.45 -25.74 2.53 -638.95 -1.62 -27.36 16 6 C -0.34 -18.07 7.29 84.15 0.61 -17.45 16 7 H 0.08 4.27 7.23 -2.91 -0.02 4.25 16 8 C 0.00 0.05 5.33 84.99 0.45 0.51 16 9 N -0.90 -49.33 10.80 21.70 0.23 -49.10 16 10 Si 0.98 39.87 29.55 68.60 2.03 41.89 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 12 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 13 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 14 C 0.51 29.00 5.70 86.76 0.49 29.49 16 15 O -0.61 -38.87 14.39 19.01 0.27 -38.59 16 16 C -0.07 -3.11 4.82 -19.87 -0.10 -3.20 16 17 C -0.09 -3.72 8.35 22.51 0.19 -3.53 16 18 C -0.10 -2.57 10.03 22.29 0.22 -2.34 16 19 C -0.11 -2.22 10.03 22.30 0.22 -2.00 16 20 C -0.08 -1.96 9.53 22.50 0.21 -1.74 16 21 C -0.14 -5.22 5.90 -19.86 -0.12 -5.34 16 22 C 0.54 20.95 8.01 86.80 0.70 21.65 16 23 N -0.83 -19.63 8.82 -175.58 -1.55 -21.18 16 24 O -0.56 -29.03 13.75 19.16 0.26 -28.77 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.11 6.31 5.26 -2.39 -0.01 6.30 16 33 H 0.02 0.96 7.54 -2.39 -0.02 0.94 16 34 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.11 4.87 7.65 -2.91 -0.02 4.84 16 36 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.17 2.20 6.42 -2.91 -0.02 2.18 16 39 H 0.42 5.89 6.88 -92.71 -0.64 5.25 16 40 H 0.41 8.61 8.93 -92.71 -0.83 7.78 16 Total: -1.00 -83.71 333.70 3.62 -80.09 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.39 Total: 33.41 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.38 Total: 9.61 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -2.93 Total: -97.64 kcal Atomic # 8 Polarization: -67.90 SS G_CDS: 0.54 Total: -67.36 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -83.71 3.62 -80.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148529267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.000 kcal (2) G-P(sol) polarization free energy of solvation -83.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds