Wall clock time and date at job start Tue Mar 31 2020 06:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47050 * 305.00249 * 3 2 1 5 5 C 1.50697 * 109.47239 * 184.99913 * 3 2 1 6 6 H 1.07994 * 120.00496 * 239.99942 * 5 3 2 7 7 C 1.37878 * 119.99687 * 60.00100 * 5 3 2 8 8 N 1.31518 * 120.00216 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46954 * 60.00173 * 9 7 5 11 11 H 1.48503 * 109.47431 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47490 * 300.00258 * 9 7 5 13 13 N 1.46500 * 109.46998 * 65.00194 * 3 2 1 14 14 C 1.38229 * 119.99934 * 275.00278 * 13 3 2 15 15 N 1.32543 * 119.96402 * 359.71984 * 14 13 3 16 16 C 1.31860 * 122.07155 * 179.72238 * 15 14 13 17 17 C 1.38663 * 121.14630 * 0.57716 * 16 15 14 18 18 C 1.37603 * 119.08329 * 359.71255 * 17 16 15 19 19 C 1.40045 * 119.09326 * 359.97438 * 18 17 16 20 20 C 1.46765 * 108.04487 * 179.97438 * 19 18 17 21 21 O 1.21523 * 124.85501 * 179.97438 * 20 19 18 22 22 O 1.34477 * 110.29568 * 359.97438 * 20 19 18 23 23 C 1.45497 * 108.97709 * 0.02562 * 22 20 19 24 24 C 1.53003 * 110.08350 * 240.78444 * 23 22 20 25 25 C 1.52998 * 110.08622 * 119.21363 * 23 22 20 26 26 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47446 * 299.99458 * 1 2 3 28 28 H 1.08992 * 109.47518 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.46986 * 240.00810 * 2 1 3 30 30 H 1.08992 * 109.47518 * 120.00087 * 2 1 3 31 31 H 0.96999 * 120.00239 * 180.02562 * 8 7 5 32 32 H 0.96997 * 120.00110 * 94.99637 * 13 3 2 33 33 H 1.08003 * 119.42608 * 180.29414 * 16 15 14 34 34 H 1.07998 * 120.45996 * 179.73605 * 17 16 15 35 35 H 1.08995 * 109.46865 * 176.87965 * 24 23 22 36 36 H 1.09000 * 109.47191 * 296.88321 * 24 23 22 37 37 H 1.09000 * 109.47019 * 56.88016 * 24 23 22 38 38 H 1.09003 * 109.46843 * 303.11555 * 25 23 22 39 39 H 1.08994 * 109.47386 * 63.11624 * 25 23 22 40 40 H 1.09000 * 109.47227 * 183.12036 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1474 -0.2350 11 1 6.3977 0.2180 -2.6510 12 1 6.4994 2.2817 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4039 2.6788 1.3700 15 7 -0.4400 2.6482 0.3484 16 6 -1.6426 3.1846 0.4173 17 6 -2.0788 3.8217 1.5690 18 6 -1.2386 3.8860 2.6569 19 6 0.0331 3.3059 2.5704 20 6 0.7161 3.5144 3.8526 21 8 1.8403 3.1321 4.1109 22 8 -0.0800 4.1891 4.7008 23 6 -1.3442 4.4728 4.0388 24 6 -1.5644 5.9844 3.9523 25 6 -2.4961 3.8162 4.8024 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8291 -0.0608 -2.9500 32 1 2.2719 2.1231 1.9978 33 1 -2.2975 3.1308 -0.4399 34 1 -3.0645 4.2609 1.6119 35 1 -2.4858 6.1867 3.4064 36 1 -1.6391 6.3989 4.9576 37 1 -0.7249 6.4446 3.4311 38 1 -2.3149 2.7443 4.8819 39 1 -2.5633 4.2484 5.8007 40 1 -3.4306 3.9881 4.2684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:40 Heat of formation + Delta-G solvation = -37.845784 kcal Electronic energy + Delta-G solvation = -23771.654184 eV Core-core repulsion = 20358.742675 eV Total energy + Delta-G solvation = -3412.911509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71162 -39.10549 -37.60855 -36.09496 -33.83402 -32.93124 -31.69559 -31.01064 -29.39603 -27.70002 -26.74367 -24.38773 -23.73450 -22.80481 -22.18922 -19.97327 -19.68939 -17.74508 -17.13812 -16.58223 -16.22537 -16.03326 -15.32880 -14.99227 -14.60415 -14.33396 -14.29784 -13.80310 -13.59514 -13.53705 -12.77817 -12.71842 -12.47834 -12.42338 -12.24945 -11.93983 -11.71934 -11.60618 -11.28427 -11.00343 -10.90617 -10.83228 -10.50559 -10.23562 -10.06695 -9.83906 -9.63659 -9.44148 -9.14867 -8.97461 -8.46947 -7.16658 -6.15903 -4.24723 0.83842 1.66467 2.80128 3.05222 3.26771 3.30742 3.34057 3.83404 3.93293 4.12724 4.17705 4.34979 4.52194 4.67225 4.93073 5.12721 5.16106 5.27812 5.32980 5.42103 5.42562 5.57790 5.59119 5.73620 5.89019 5.90577 6.18053 6.30384 6.36196 6.51074 6.65119 6.84638 6.96474 7.06643 7.27530 7.43673 7.64106 7.68973 7.76612 7.87015 8.12550 8.26050 8.63406 8.87193 9.41607 10.89323 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.004797 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.643829 B = 5836.057331 C = 6495.925984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.059 0.941 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.663 5.663 14 C 0.487 3.513 15 N -0.523 5.523 16 C 0.199 3.801 17 C -0.242 4.242 18 C -0.001 4.001 19 C -0.357 4.357 20 C 0.532 3.468 21 O -0.469 6.469 22 O -0.322 6.322 23 C 0.142 3.858 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 7.721 8.050 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.077 0.923 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.283 5.283 14 C 0.245 3.755 15 N -0.240 5.240 16 C 0.032 3.968 17 C -0.266 4.266 18 C -0.009 4.009 19 C -0.368 4.368 20 C 0.376 3.624 21 O -0.356 6.356 22 O -0.238 6.238 23 C 0.104 3.896 24 C -0.203 4.203 25 C -0.202 4.202 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.180 0.820 34 H 0.151 0.849 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.713 6.939 7.278 17.005 hybrid contribution 0.912 0.309 0.820 1.264 sum -12.801 7.248 8.098 16.792 Atomic orbital electron populations 1.21839 0.98429 0.98063 1.00809 1.21949 0.92665 0.99578 1.02531 1.19028 0.94543 0.89400 0.80369 0.92305 1.21205 0.90614 1.39329 1.06477 0.92053 1.24833 0.98724 0.94573 0.95215 1.69868 1.35259 1.37537 1.09327 0.86493 0.84694 0.78429 0.77456 1.20066 1.21057 1.20130 1.45915 1.10622 1.52536 1.19215 1.18084 0.86932 0.84680 0.85835 1.67717 1.04442 1.23308 1.28530 1.22837 0.90915 0.87109 0.95921 1.20731 1.01620 1.10564 0.93695 1.20598 0.93463 0.92422 0.94432 1.20728 0.99822 1.18303 0.97922 1.20112 0.84287 0.74942 0.83022 1.90864 1.15952 1.48462 1.80286 1.87269 1.26830 1.69110 1.40640 1.21299 0.83111 0.96911 0.88253 1.21989 1.03429 0.91202 1.03633 1.21986 0.95863 1.01625 1.00758 0.95762 0.94982 0.92495 0.87900 0.95048 0.92469 0.75156 0.82009 0.84922 0.89853 0.90659 0.91309 0.91345 0.90657 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.45 37.16 0.31 -2.47 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.69 2.24 -69.08 -0.16 6.54 16 4 H 0.06 1.61 7.53 -51.93 -0.39 1.22 16 5 C -0.54 -14.56 8.73 -34.44 -0.30 -14.86 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.65 16 9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.66 -14.90 5.13 -54.88 -0.28 -15.18 16 14 C 0.49 9.71 6.06 -155.16 -0.94 8.77 16 15 N -0.52 -9.59 6.41 -12.14 -0.08 -9.66 16 16 C 0.20 2.69 11.18 -17.38 -0.19 2.50 16 17 C -0.24 -2.82 10.09 -39.66 -0.40 -3.22 16 18 C 0.00 -0.01 5.03 -104.27 -0.52 -0.54 16 19 C -0.36 -6.37 6.22 -104.95 -0.65 -7.02 16 20 C 0.53 9.97 8.54 34.18 0.29 10.26 16 21 O -0.47 -10.15 16.71 -18.96 -0.32 -10.47 16 22 O -0.32 -5.06 10.52 -39.54 -0.42 -5.48 16 23 C 0.14 1.67 1.39 -91.87 -0.13 1.54 16 24 C -0.15 -1.29 8.94 37.16 0.33 -0.96 16 25 C -0.15 -1.27 8.94 37.16 0.33 -0.94 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.65 5.60 -51.93 -0.29 0.36 16 28 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.41 9.37 7.16 -40.82 -0.29 9.08 16 33 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -30.32 328.69 -8.25 -38.57 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.45 Total: 6.76 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.27 Total: -1.83 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.27 Total: -48.49 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.73 Total: -15.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.32 -8.25 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.727 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds