Wall clock time and date at job start Tue Mar 31 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47050 * 305.00249 * 3 2 1 5 5 C 1.50697 * 109.47239 * 184.99913 * 3 2 1 6 6 H 1.07994 * 120.00496 * 239.99942 * 5 3 2 7 7 C 1.37878 * 119.99687 * 60.00100 * 5 3 2 8 8 N 1.31518 * 120.00216 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46954 * 60.00173 * 9 7 5 11 11 H 1.48503 * 109.47431 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47490 * 300.00258 * 9 7 5 13 13 N 1.46500 * 109.46998 * 65.00194 * 3 2 1 14 14 C 1.38229 * 119.99934 * 275.00278 * 13 3 2 15 15 N 1.32543 * 119.96402 * 359.71984 * 14 13 3 16 16 C 1.31860 * 122.07155 * 179.72238 * 15 14 13 17 17 C 1.38663 * 121.14630 * 0.57716 * 16 15 14 18 18 C 1.37603 * 119.08329 * 359.71255 * 17 16 15 19 19 C 1.40045 * 119.09326 * 359.97438 * 18 17 16 20 20 C 1.46765 * 108.04487 * 179.97438 * 19 18 17 21 21 O 1.21523 * 124.85501 * 179.97438 * 20 19 18 22 22 O 1.34477 * 110.29568 * 359.97438 * 20 19 18 23 23 C 1.45497 * 108.97709 * 0.02562 * 22 20 19 24 24 C 1.53003 * 110.08350 * 240.78444 * 23 22 20 25 25 C 1.52998 * 110.08622 * 119.21363 * 23 22 20 26 26 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47446 * 299.99458 * 1 2 3 28 28 H 1.08992 * 109.47518 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.46986 * 240.00810 * 2 1 3 30 30 H 1.08992 * 109.47518 * 120.00087 * 2 1 3 31 31 H 0.96999 * 120.00239 * 180.02562 * 8 7 5 32 32 H 0.96997 * 120.00110 * 94.99637 * 13 3 2 33 33 H 1.08003 * 119.42608 * 180.29414 * 16 15 14 34 34 H 1.07998 * 120.45996 * 179.73605 * 17 16 15 35 35 H 1.08995 * 109.46865 * 176.87965 * 24 23 22 36 36 H 1.09000 * 109.47191 * 296.88321 * 24 23 22 37 37 H 1.09000 * 109.47019 * 56.88016 * 24 23 22 38 38 H 1.09003 * 109.46843 * 303.11555 * 25 23 22 39 39 H 1.08994 * 109.47386 * 63.11624 * 25 23 22 40 40 H 1.09000 * 109.47227 * 183.12036 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1474 -0.2350 11 1 6.3977 0.2180 -2.6510 12 1 6.4994 2.2817 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4039 2.6788 1.3700 15 7 -0.4400 2.6482 0.3484 16 6 -1.6426 3.1846 0.4173 17 6 -2.0788 3.8217 1.5690 18 6 -1.2386 3.8860 2.6569 19 6 0.0331 3.3059 2.5704 20 6 0.7161 3.5144 3.8526 21 8 1.8403 3.1321 4.1109 22 8 -0.0800 4.1891 4.7008 23 6 -1.3442 4.4728 4.0388 24 6 -1.5644 5.9844 3.9523 25 6 -2.4961 3.8162 4.8024 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8291 -0.0608 -2.9500 32 1 2.2719 2.1231 1.9978 33 1 -2.2975 3.1308 -0.4399 34 1 -3.0645 4.2609 1.6119 35 1 -2.4858 6.1867 3.4064 36 1 -1.6391 6.3989 4.9576 37 1 -0.7249 6.4446 3.4311 38 1 -2.3149 2.7443 4.8819 39 1 -2.5633 4.2484 5.8007 40 1 -3.4306 3.9881 4.2684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:39 Heat of formation + Delta-G solvation = -55.759236 kcal Electronic energy + Delta-G solvation = -23772.430970 eV Core-core repulsion = 20358.742675 eV Total energy + Delta-G solvation = -3413.688295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.91961 -40.43272 -39.01985 -37.73274 -35.06323 -34.58639 -33.22203 -32.39590 -30.83301 -28.56015 -28.35995 -25.63319 -25.31541 -24.28739 -23.48723 -21.63635 -21.04867 -19.17157 -18.63876 -18.09241 -17.47965 -17.40970 -16.95482 -16.51822 -16.00393 -15.78120 -15.48651 -15.14076 -14.78944 -14.60315 -14.57718 -14.05178 -13.56265 -13.54138 -13.22041 -13.19714 -13.18032 -12.89234 -12.77177 -12.73412 -12.53455 -12.22144 -12.09642 -11.94736 -11.61626 -11.44970 -11.26463 -10.95003 -10.70475 -10.55130 -10.31796 -8.66112 -8.21426 -6.37516 -0.39433 0.47450 1.38949 1.40103 1.44602 1.48258 1.91501 2.30540 2.52853 2.77993 2.88113 2.99505 3.07250 3.64637 3.80665 3.87934 4.01184 4.18882 4.51458 4.54249 4.57576 4.64995 4.71567 4.72796 4.77018 4.79615 4.83709 5.05442 5.07588 5.21734 5.24355 5.25937 5.43502 5.49421 5.54639 5.61472 5.76066 5.81401 6.02487 6.28284 6.35557 6.61843 6.70556 7.25047 7.35214 8.82848 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.004797 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.643829 B = 5836.057331 C = 6495.925984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.284 3.716 4 H 0.029 0.971 5 C -0.562 4.562 6 H 0.050 0.950 7 C 0.028 3.972 8 N -0.903 5.903 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.274 1.274 12 H -0.275 1.275 13 N -0.688 5.688 14 C 0.467 3.533 15 N -0.557 5.557 16 C 0.194 3.806 17 C -0.208 4.208 18 C 0.005 3.995 19 C -0.382 4.382 20 C 0.527 3.473 21 O -0.517 6.517 22 O -0.329 6.329 23 C 0.133 3.867 24 C -0.142 4.142 25 C -0.142 4.142 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.268 0.732 32 H 0.403 0.597 33 H 0.204 0.796 34 H 0.191 0.809 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 9.240 8.311 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.047 0.953 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.541 5.541 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.200 1.200 13 N -0.310 5.310 14 C 0.228 3.772 15 N -0.275 5.275 16 C 0.030 3.970 17 C -0.231 4.231 18 C -0.004 4.004 19 C -0.393 4.393 20 C 0.374 3.626 21 O -0.407 6.407 22 O -0.246 6.246 23 C 0.096 3.904 24 C -0.199 4.199 25 C -0.199 4.199 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.221 0.779 34 H 0.208 0.792 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.305 8.501 7.544 20.703 hybrid contribution 1.760 -0.031 0.772 1.923 sum -15.545 8.470 8.316 19.558 Atomic orbital electron populations 1.21636 0.95749 0.99077 1.00813 1.21793 0.95044 0.98769 1.00513 1.18544 0.93094 0.89497 0.80749 0.95336 1.21513 0.92193 1.39739 1.06617 0.93209 1.25566 1.02858 0.94092 0.94812 1.69972 1.36771 1.37743 1.09585 0.85557 0.79685 0.78365 0.77684 1.19887 1.19927 1.20004 1.45583 1.12260 1.55165 1.17973 1.18270 0.86424 0.85332 0.87169 1.67701 1.06212 1.25022 1.28539 1.23700 0.89574 0.85619 0.98078 1.21324 1.03001 1.07357 0.91373 1.21055 0.91787 0.91422 0.96100 1.20793 1.01919 1.19587 0.96998 1.20401 0.84029 0.74463 0.83720 1.90818 1.18031 1.50614 1.81225 1.87250 1.28295 1.68160 1.40860 1.21908 0.82174 0.99156 0.87151 1.22085 1.04359 0.88371 1.05099 1.22080 0.95669 1.00295 1.01808 0.94087 0.94671 0.92627 0.90387 0.96285 0.92262 0.76154 0.77923 0.79156 0.86192 0.89044 0.93155 0.93038 0.89068 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.45 71.98 0.61 -4.22 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.96 16 3 C 0.28 15.00 2.24 44.25 0.10 15.10 16 4 H 0.03 1.66 7.53 -2.39 -0.02 1.64 16 5 C -0.56 -32.11 8.73 25.60 0.22 -31.89 16 6 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 7 C 0.03 1.56 5.29 84.65 0.45 2.00 16 8 N -0.90 -51.18 11.29 21.45 0.24 -50.93 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.69 -32.93 5.13 -327.53 -1.68 -34.61 16 14 C 0.47 19.14 6.06 133.60 0.81 19.94 16 15 N -0.56 -20.12 6.41 -192.31 -1.23 -21.36 16 16 C 0.19 4.57 11.18 84.79 0.95 5.52 16 17 C -0.21 -3.77 10.09 22.22 0.22 -3.55 16 18 C 0.00 0.11 5.03 -19.64 -0.10 0.01 16 19 C -0.38 -13.75 6.22 -20.08 -0.12 -13.88 16 20 C 0.53 20.54 8.54 70.05 0.60 21.13 16 21 O -0.52 -23.98 16.71 19.45 0.32 -23.65 16 22 O -0.33 -10.25 10.52 -54.20 -0.57 -10.82 16 23 C 0.13 2.70 1.39 -11.60 -0.02 2.69 16 24 C -0.14 -1.92 8.94 71.98 0.64 -1.28 16 25 C -0.14 -1.87 8.94 71.98 0.64 -1.23 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 1.43 5.60 -2.38 -0.01 1.42 16 28 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 29 H 0.08 4.28 5.95 -2.39 -0.01 4.27 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 20.05 7.16 -92.71 -0.66 19.39 16 33 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.00 328.69 4.68 -68.32 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.40 Total: 22.41 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.17 Total: 4.41 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -2.67 Total: -106.90 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.24 Total: -34.47 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.00 4.68 -68.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.558 kcal (2) G-P(sol) polarization free energy of solvation -72.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds