Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50709 * 120.00514 * 2 1 4 4 C 1.53000 * 109.47316 * 124.99856 * 3 2 1 5 5 C 1.52993 * 109.46840 * 60.00332 * 4 3 2 6 6 N 1.46495 * 109.46912 * 180.02562 * 4 3 2 7 7 C 1.39082 * 119.99875 * 179.64686 * 6 4 3 8 8 C 1.38740 * 119.65560 * 353.81606 * 7 6 4 9 9 C 1.40781 * 118.66718 * 179.75987 * 8 7 6 10 10 C 1.41549 * 120.99367 * 180.26408 * 9 8 7 11 11 H 1.08005 * 120.00400 * 342.31309 * 10 9 8 12 12 C 1.40026 * 120.00033 * 162.31936 * 10 9 8 13 13 N 1.30750 * 120.00140 * 342.17931 * 12 10 9 14 14 Si 1.86799 * 120.00194 * 162.18902 * 12 10 9 15 15 H 1.48503 * 109.47126 * 89.99396 * 14 12 10 16 16 H 1.48501 * 109.47177 * 209.99451 * 14 12 10 17 17 H 1.48501 * 109.47121 * 329.99597 * 14 12 10 18 18 C 1.41188 * 118.01181 * 0.50672 * 9 8 7 19 19 C 1.36549 * 119.14733 * 359.75295 * 18 9 8 20 20 N 1.32099 * 121.27021 * 359.97438 * 19 18 9 21 21 C 1.50701 * 109.46834 * 300.00289 * 4 3 2 22 22 O 1.20825 * 119.99894 * 95.00190 * 21 4 3 23 23 O 1.34224 * 120.00082 * 274.99561 * 21 4 3 24 24 C 1.45200 * 117.00432 * 180.02562 * 23 21 4 25 25 H 1.08008 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00576 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00114 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46447 * 4.99917 * 3 2 1 29 29 H 1.08999 * 109.46656 * 245.00506 * 3 2 1 30 30 H 1.08997 * 109.47549 * 53.29871 * 5 4 3 31 31 H 1.09003 * 109.47321 * 293.30117 * 5 4 3 32 32 H 1.09002 * 109.47176 * 173.30335 * 5 4 3 33 33 H 0.97000 * 120.00351 * 359.64252 * 6 4 3 34 34 H 1.07999 * 120.66921 * 0.03067 * 8 7 6 35 35 H 0.96994 * 120.00159 * 180.02562 * 13 12 10 36 36 H 1.08007 * 120.42546 * 179.77493 * 18 9 8 37 37 H 1.08003 * 119.36602 * 180.02562 * 19 18 9 38 38 H 1.09000 * 109.46651 * 60.00071 * 24 23 21 39 39 H 1.08991 * 109.47637 * 180.02562 * 24 23 21 40 40 H 1.09004 * 109.46875 * 300.00404 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0245 0.1729 1.0559 6 7 3.7672 2.6020 1.1819 7 6 4.7079 2.8619 2.1729 8 6 4.8560 1.9740 3.2286 9 6 5.8179 2.2548 4.2174 10 6 6.0141 1.3801 5.3128 11 1 5.2578 0.6511 5.5640 12 6 7.1887 1.4598 6.0709 13 7 8.2382 2.0721 5.5879 14 14 7.2564 0.6914 7.7721 15 1 7.7182 -0.7157 7.6616 16 1 8.2016 1.4571 8.6239 17 1 5.9033 0.7217 8.3832 18 6 6.5774 3.4378 4.0865 19 6 6.3571 4.2545 3.0146 20 7 5.4496 3.9578 2.1016 21 6 2.2638 1.1983 2.4693 22 8 2.1262 0.1120 2.9802 23 8 1.7299 2.2849 3.0487 24 6 1.0007 2.0805 4.2875 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 4.4967 0.2028 0.0740 31 1 3.4938 -0.7718 1.1751 32 1 4.7878 0.2609 1.8290 33 1 3.5960 3.2609 0.4910 34 1 4.2486 1.0830 3.2884 35 1 9.0519 2.1270 6.1128 36 1 7.3234 3.6933 4.8246 37 1 6.9364 5.1601 2.9108 38 1 1.6669 1.6481 5.0340 39 1 0.6220 3.0366 4.6484 40 1 0.1655 1.4029 4.1099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163091150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = -26.093920 kcal Electronic energy + Delta-G solvation = -23947.120289 eV Core-core repulsion = 20534.718379 eV Total energy + Delta-G solvation = -3412.401910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62301 -38.41886 -37.04395 -35.83827 -34.43973 -33.66589 -30.84863 -30.26324 -27.91926 -27.55269 -26.63318 -25.76497 -23.58666 -21.40862 -21.28242 -20.04127 -19.34849 -17.82049 -17.08995 -16.42064 -16.33268 -15.80572 -15.26752 -14.91328 -14.56494 -14.25931 -13.87391 -13.69581 -13.36482 -12.88243 -12.73067 -12.66369 -12.39363 -12.25513 -11.82899 -11.74890 -11.67325 -11.42343 -11.21116 -11.09673 -11.04138 -10.70323 -10.37833 -10.35652 -10.25778 -9.75697 -9.47124 -9.39388 -8.99349 -7.98612 -7.92169 -6.84060 -6.53912 -4.57074 2.17547 2.58548 2.78303 2.99859 3.02558 3.06676 3.12789 3.38194 3.81429 3.87629 4.67748 4.81191 4.85426 4.89894 5.16600 5.28488 5.39251 5.51934 5.56212 5.71111 5.80554 5.83674 5.85942 5.96352 6.05977 6.13613 6.50974 6.61024 6.65567 6.70854 6.79600 6.89274 6.91950 6.96397 7.29854 7.54768 7.79948 7.96280 8.05261 8.21756 8.40714 8.66715 8.82865 8.89340 9.76527 10.06205 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.005385 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.043827 B = 5198.580627 C = 5815.371577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C -0.093 4.093 4 C 0.216 3.784 5 C -0.167 4.167 6 N -0.728 5.728 7 C 0.402 3.598 8 C -0.344 4.344 9 C 0.153 3.847 10 C -0.448 4.448 11 H 0.078 0.922 12 C 0.079 3.921 13 N -0.779 5.779 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.249 4.249 19 C 0.115 3.885 20 N -0.620 5.620 21 C 0.469 3.531 22 O -0.511 6.511 23 O -0.343 6.343 24 C 0.035 3.965 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.101 0.899 35 H 0.282 0.718 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -1.764 -6.172 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.168 4.168 3 C -0.130 4.130 4 C 0.125 3.875 5 C -0.225 4.225 6 N -0.366 5.366 7 C 0.172 3.828 8 C -0.371 4.371 9 C 0.144 3.856 10 C -0.479 4.479 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.403 5.403 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.184 1.184 18 C -0.273 4.273 19 C -0.034 4.034 20 N -0.344 5.344 21 C 0.310 3.690 22 O -0.398 6.398 23 O -0.259 6.259 24 C -0.059 4.059 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.156 -1.583 -6.552 12.189 hybrid contribution 0.146 -0.773 1.521 1.713 sum -10.010 -2.356 -5.031 11.448 Atomic orbital electron populations 1.23841 0.95835 1.01878 1.01101 1.22874 0.96033 0.98096 0.99766 1.20968 0.97806 0.96952 0.97275 1.19807 0.90754 0.87627 0.89281 1.22410 0.99673 0.96187 1.04190 1.44035 1.43260 1.17438 1.31865 1.17770 0.87820 0.90635 0.86556 1.21269 1.12152 1.03943 0.99705 1.17584 0.88009 0.90429 0.89545 1.19621 1.02360 1.15905 1.10004 0.90413 1.25994 0.94678 0.93799 0.99641 1.69791 1.01661 1.32273 1.36620 0.86287 0.79472 0.79626 0.81274 1.19284 1.19877 1.18351 1.22001 1.06725 0.96848 1.01720 1.21374 0.93580 0.97539 0.90910 1.66711 1.13374 1.21024 1.33245 1.24202 0.76028 0.82220 0.86508 1.90624 1.57303 1.28304 1.63587 1.86567 1.64098 1.37384 1.37831 1.23190 0.95499 1.02677 0.84504 0.88657 0.88250 0.86436 0.90067 0.88550 0.91178 0.90810 0.89090 0.76878 0.88168 0.90661 0.85010 0.86397 0.91674 0.88669 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 14.32 29.02 0.42 -1.59 16 2 C -0.15 -1.74 8.04 -36.02 -0.29 -2.03 16 3 C -0.09 -1.13 4.83 -27.88 -0.13 -1.26 16 4 C 0.22 3.55 0.80 -132.98 -0.11 3.45 16 5 C -0.17 -2.77 7.55 37.15 0.28 -2.49 16 6 N -0.73 -13.49 5.02 -48.87 -0.25 -13.73 16 7 C 0.40 9.38 7.14 -154.98 -1.11 8.27 16 8 C -0.34 -8.68 7.00 -38.44 -0.27 -8.95 16 9 C 0.15 4.15 5.66 -106.55 -0.60 3.54 16 10 C -0.45 -12.03 9.13 -37.65 -0.34 -12.38 16 11 H 0.08 2.06 7.91 -52.48 -0.42 1.65 16 12 C 0.08 1.96 5.23 -17.34 -0.09 1.87 16 13 N -0.78 -19.69 10.61 55.55 0.59 -19.10 16 14 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 18 C -0.25 -6.54 8.81 -39.07 -0.34 -6.89 16 19 C 0.11 2.81 11.10 -18.05 -0.20 2.61 16 20 N -0.62 -15.08 10.37 -12.82 -0.13 -15.21 16 21 C 0.47 8.77 3.39 36.01 0.12 8.90 16 22 O -0.51 -10.37 15.13 -18.75 -0.28 -10.66 16 23 O -0.34 -6.36 10.15 -39.24 -0.40 -6.76 16 24 C 0.04 0.54 10.56 101.05 1.07 1.61 16 25 H 0.10 0.93 7.84 -52.48 -0.41 0.52 16 26 H 0.10 0.92 8.06 -52.48 -0.42 0.50 16 27 H 0.12 1.34 6.97 -52.49 -0.37 0.97 16 28 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.14 6.35 -51.93 -0.33 0.81 16 32 H 0.09 1.86 5.19 -51.93 -0.27 1.59 16 33 H 0.40 6.54 8.60 -40.82 -0.35 6.19 16 34 H 0.10 2.51 3.95 -52.49 -0.21 2.30 16 35 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 36 H 0.13 3.52 5.79 -52.48 -0.30 3.22 16 37 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 38 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -30.52 331.25 -7.27 -37.79 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -5.15 Total: 14.55 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.60 Total: -5.34 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.21 Total: -48.05 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.68 Total: -17.41 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.52 -7.27 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163091150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.692 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds