Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50709 * 120.00514 * 2 1 4 4 C 1.53000 * 109.47316 * 124.99856 * 3 2 1 5 5 C 1.52993 * 109.46840 * 60.00332 * 4 3 2 6 6 N 1.46495 * 109.46912 * 180.02562 * 4 3 2 7 7 C 1.39082 * 119.99875 * 179.64686 * 6 4 3 8 8 C 1.38740 * 119.65560 * 353.81606 * 7 6 4 9 9 C 1.40781 * 118.66718 * 179.75987 * 8 7 6 10 10 C 1.41549 * 120.99367 * 180.26408 * 9 8 7 11 11 H 1.08005 * 120.00400 * 342.31309 * 10 9 8 12 12 C 1.40026 * 120.00033 * 162.31936 * 10 9 8 13 13 N 1.30750 * 120.00140 * 342.17931 * 12 10 9 14 14 Si 1.86799 * 120.00194 * 162.18902 * 12 10 9 15 15 H 1.48503 * 109.47126 * 89.99396 * 14 12 10 16 16 H 1.48501 * 109.47177 * 209.99451 * 14 12 10 17 17 H 1.48501 * 109.47121 * 329.99597 * 14 12 10 18 18 C 1.41188 * 118.01181 * 0.50672 * 9 8 7 19 19 C 1.36549 * 119.14733 * 359.75295 * 18 9 8 20 20 N 1.32099 * 121.27021 * 359.97438 * 19 18 9 21 21 C 1.50701 * 109.46834 * 300.00289 * 4 3 2 22 22 O 1.20825 * 119.99894 * 95.00190 * 21 4 3 23 23 O 1.34224 * 120.00082 * 274.99561 * 21 4 3 24 24 C 1.45200 * 117.00432 * 180.02562 * 23 21 4 25 25 H 1.08008 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00576 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00114 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46447 * 4.99917 * 3 2 1 29 29 H 1.08999 * 109.46656 * 245.00506 * 3 2 1 30 30 H 1.08997 * 109.47549 * 53.29871 * 5 4 3 31 31 H 1.09003 * 109.47321 * 293.30117 * 5 4 3 32 32 H 1.09002 * 109.47176 * 173.30335 * 5 4 3 33 33 H 0.97000 * 120.00351 * 359.64252 * 6 4 3 34 34 H 1.07999 * 120.66921 * 0.03067 * 8 7 6 35 35 H 0.96994 * 120.00159 * 180.02562 * 13 12 10 36 36 H 1.08007 * 120.42546 * 179.77493 * 18 9 8 37 37 H 1.08003 * 119.36602 * 180.02562 * 19 18 9 38 38 H 1.09000 * 109.46651 * 60.00071 * 24 23 21 39 39 H 1.08991 * 109.47637 * 180.02562 * 24 23 21 40 40 H 1.09004 * 109.46875 * 300.00404 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0245 0.1729 1.0559 6 7 3.7672 2.6020 1.1819 7 6 4.7079 2.8619 2.1729 8 6 4.8560 1.9740 3.2286 9 6 5.8179 2.2548 4.2174 10 6 6.0141 1.3801 5.3128 11 1 5.2578 0.6511 5.5640 12 6 7.1887 1.4598 6.0709 13 7 8.2382 2.0721 5.5879 14 14 7.2564 0.6914 7.7721 15 1 7.7182 -0.7157 7.6616 16 1 8.2016 1.4571 8.6239 17 1 5.9033 0.7217 8.3832 18 6 6.5774 3.4378 4.0865 19 6 6.3571 4.2545 3.0146 20 7 5.4496 3.9578 2.1016 21 6 2.2638 1.1983 2.4693 22 8 2.1262 0.1120 2.9802 23 8 1.7299 2.2849 3.0487 24 6 1.0007 2.0805 4.2875 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 4.4967 0.2028 0.0740 31 1 3.4938 -0.7718 1.1751 32 1 4.7878 0.2609 1.8290 33 1 3.5960 3.2609 0.4910 34 1 4.2486 1.0830 3.2884 35 1 9.0519 2.1270 6.1128 36 1 7.3234 3.6933 4.8246 37 1 6.9364 5.1601 2.9108 38 1 1.6669 1.6481 5.0340 39 1 0.6220 3.0366 4.6484 40 1 0.1655 1.4029 4.1099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163091150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = -43.921586 kcal Electronic energy + Delta-G solvation = -23947.893355 eV Core-core repulsion = 20534.718379 eV Total energy + Delta-G solvation = -3413.174976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07530 -40.20472 -38.43862 -37.32557 -36.12798 -35.05963 -32.69082 -31.81025 -29.55994 -28.89007 -28.11091 -27.43304 -24.95685 -23.23592 -23.06508 -21.33877 -20.52107 -19.54942 -18.62517 -18.00224 -17.79210 -17.41216 -16.85498 -16.45621 -16.05468 -15.76788 -15.34498 -15.05695 -14.86121 -14.49301 -14.32667 -14.15141 -13.85347 -13.66153 -13.28122 -13.19984 -13.04413 -12.92692 -12.86797 -12.71997 -12.23181 -12.06798 -11.95716 -11.79820 -11.76515 -11.60580 -11.29180 -10.71733 -10.29767 -9.95617 -9.86624 -8.72106 -8.33516 -6.58543 0.93842 1.11430 1.20119 1.31519 1.34792 1.47566 1.56698 1.78989 2.15493 2.36382 2.76625 3.57944 3.66581 3.84159 3.87335 4.07775 4.22742 4.23573 4.27479 4.29089 4.59938 4.62719 4.65030 4.68678 4.84203 4.86103 4.97420 4.99621 5.02406 5.10207 5.24050 5.33023 5.41923 5.61380 5.70198 5.79842 5.85019 6.10958 6.25085 6.50538 6.75023 6.84264 6.86714 7.00732 7.85711 8.20776 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.005385 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.043827 B = 5198.580627 C = 5815.371577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C -0.083 4.083 4 C 0.213 3.787 5 C -0.162 4.162 6 N -0.713 5.713 7 C 0.407 3.593 8 C -0.358 4.358 9 C 0.123 3.877 10 C -0.484 4.484 11 H 0.066 0.934 12 C 0.042 3.958 13 N -0.801 5.801 14 Si 0.982 3.018 15 H -0.260 1.260 16 H -0.257 1.257 17 H -0.263 1.263 18 C -0.273 4.273 19 C 0.117 3.883 20 N -0.625 5.625 21 C 0.464 3.536 22 O -0.534 6.534 23 O -0.357 6.357 24 C 0.030 3.970 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.294 0.706 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.041 0.959 39 H 0.125 0.875 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -1.633 -6.859 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.120 4.120 4 C 0.123 3.877 5 C -0.220 4.220 6 N -0.351 5.351 7 C 0.175 3.825 8 C -0.384 4.384 9 C 0.115 3.885 10 C -0.514 4.514 11 H 0.084 0.916 12 C -0.176 4.176 13 N -0.426 5.426 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.180 1.180 17 H -0.187 1.187 18 C -0.298 4.298 19 C -0.033 4.033 20 N -0.349 5.349 21 C 0.307 3.693 22 O -0.423 6.423 23 O -0.273 6.273 24 C -0.064 4.064 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.246 0.754 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.060 0.940 39 H 0.143 0.857 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.126 -1.444 -7.283 13.376 hybrid contribution 0.368 -0.817 1.678 1.902 sum -10.758 -2.261 -5.606 12.340 Atomic orbital electron populations 1.24064 0.95579 1.02965 0.99104 1.22883 0.96520 0.97768 1.01551 1.20983 0.97209 0.97782 0.96008 1.20107 0.91153 0.86277 0.90203 1.22353 0.98776 0.96932 1.03939 1.44020 1.41819 1.18561 1.30694 1.17956 0.87913 0.89717 0.86883 1.21276 1.12356 1.04452 1.00349 1.17984 0.89003 0.91121 0.90367 1.19791 1.03391 1.16660 1.11565 0.91606 1.26807 0.93573 0.94068 1.03149 1.69808 1.02239 1.32406 1.38174 0.85208 0.79498 0.79046 0.76029 1.18489 1.18031 1.18671 1.21966 1.07530 0.97505 1.02798 1.21793 0.93380 0.98000 0.90096 1.66880 1.13645 1.21277 1.33085 1.24649 0.75760 0.81930 0.86916 1.90602 1.58311 1.29124 1.64300 1.86544 1.64397 1.37516 1.38825 1.23426 0.95194 1.04792 0.82945 0.87712 0.87096 0.86523 0.88996 0.86121 0.88766 0.89903 0.93319 0.75351 0.88700 0.89505 0.85952 0.83555 0.94007 0.85692 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 14.32 67.79 0.97 -2.37 16 2 C -0.17 -3.56 8.04 25.66 0.21 -3.36 16 3 C -0.08 -1.80 4.83 29.85 0.14 -1.66 16 4 C 0.21 6.76 0.80 2.86 0.00 6.76 16 5 C -0.16 -5.34 7.55 71.98 0.54 -4.80 16 6 N -0.71 -25.58 5.02 -308.52 -1.55 -27.13 16 7 C 0.41 18.99 7.14 132.90 0.95 19.94 16 8 C -0.36 -18.62 7.00 23.01 0.16 -18.45 16 9 C 0.12 6.96 5.66 -21.12 -0.12 6.84 16 10 C -0.48 -27.06 9.13 23.52 0.21 -26.85 16 11 H 0.07 3.69 7.91 -2.91 -0.02 3.66 16 12 C 0.04 2.13 5.23 85.29 0.45 2.58 16 13 N -0.80 -41.12 10.61 21.84 0.23 -40.89 16 14 Si 0.98 38.17 29.59 68.60 2.03 40.20 16 15 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C -0.27 -14.77 8.81 22.60 0.20 -14.57 16 19 C 0.12 5.71 11.10 84.26 0.94 6.64 16 20 N -0.63 -30.08 10.37 -194.48 -2.02 -32.10 16 21 C 0.46 17.27 3.39 71.24 0.24 17.51 16 22 O -0.53 -21.93 15.13 21.97 0.33 -21.60 16 23 O -0.36 -13.05 10.15 -51.36 -0.52 -13.57 16 24 C 0.03 0.90 10.56 113.37 1.20 2.09 16 25 H 0.10 1.73 7.84 -2.91 -0.02 1.71 16 26 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 27 H 0.12 2.46 6.97 -2.91 -0.02 2.44 16 28 H 0.09 1.83 7.79 -2.38 -0.02 1.81 16 29 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.08 2.54 6.35 -2.39 -0.02 2.53 16 32 H 0.05 2.04 5.19 -2.39 -0.01 2.02 16 33 H 0.41 12.62 8.60 -92.71 -0.80 11.82 16 34 H 0.10 4.97 3.95 -2.91 -0.01 4.95 16 35 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 36 H 0.12 6.74 5.79 -2.91 -0.02 6.72 16 37 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 38 H 0.04 1.43 8.13 -2.39 -0.02 1.42 16 39 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.07 1.92 8.13 -2.38 -0.02 1.90 16 Total: -1.00 -67.73 331.25 4.87 -62.86 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.27 Total: 41.92 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 6.09 Total: -9.68 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.33 Total: -100.12 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.19 Total: -35.18 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -67.73 4.87 -62.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163091150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.940 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds