Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47535 * 2 1 4 4 C 1.52994 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.37141 * 120.00014 * 270.00732 * 5 4 3 7 7 H 1.07997 * 120.00210 * 41.94619 * 6 5 4 8 8 C 1.38915 * 119.99736 * 221.94769 * 6 5 4 9 9 N 1.31446 * 119.99835 * 16.52062 * 8 6 5 10 10 Si 1.86795 * 119.99614 * 196.52808 * 8 6 5 11 11 H 1.48503 * 109.47728 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47462 * 119.99971 * 10 8 6 13 13 H 1.48508 * 109.46922 * 239.99807 * 10 8 6 14 14 C 1.34777 * 120.00046 * 89.99621 * 5 4 3 15 15 O 1.21542 * 120.00207 * 175.36329 * 14 5 4 16 16 N 1.34776 * 119.99875 * 355.36822 * 14 5 4 17 17 C 1.34774 * 120.00257 * 185.10142 * 16 14 5 18 18 O 1.21514 * 119.99737 * 5.14529 * 17 16 14 19 19 C 1.47767 * 120.00363 * 185.14935 * 17 16 14 20 20 C 1.39611 * 120.14668 * 174.24461 * 19 17 16 21 21 C 1.37952 * 119.84617 * 179.97438 * 20 19 17 22 22 C 1.38367 * 120.14853 * 0.02562 * 21 20 19 23 23 C 1.38364 * 120.30320 * 359.97438 * 22 21 20 24 24 C 1.37952 * 120.14447 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46880 * 300.00114 * 1 2 3 27 27 H 1.09002 * 109.47013 * 59.99428 * 1 2 3 28 28 H 1.09006 * 109.46880 * 239.99886 * 2 1 3 29 29 H 1.09002 * 109.47013 * 120.00572 * 2 1 3 30 30 H 1.09008 * 109.46623 * 60.00074 * 3 2 1 31 31 H 1.08996 * 109.47089 * 300.00567 * 3 2 1 32 32 H 1.09008 * 109.47066 * 60.00553 * 4 3 2 33 33 H 1.08996 * 109.47695 * 300.00403 * 4 3 2 34 34 H 0.97001 * 119.99608 * 184.88629 * 9 8 6 35 35 H 0.97003 * 119.99988 * 5.10679 * 16 14 5 36 36 H 1.07993 * 120.08172 * 359.70473 * 20 19 17 37 37 H 1.08003 * 119.92420 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.84831 * 179.97438 * 22 21 20 39 39 H 1.07989 * 119.92722 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.07409 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.2875 3.4704 -1.1861 7 1 3.5875 3.3658 -2.0019 8 6 5.4199 4.2603 -1.3396 9 7 6.4233 4.1409 -0.4989 10 14 5.5164 5.4922 -2.7405 11 1 4.2662 5.4321 -3.5397 12 1 5.6850 6.8596 -2.1865 13 1 6.6751 5.1638 -3.6094 14 6 4.2826 3.4586 1.1687 15 8 4.7671 4.5733 1.1710 16 7 3.9696 2.8575 2.3337 17 6 4.0971 3.5300 3.4947 18 8 4.4040 4.7057 3.4851 19 6 3.8637 2.8378 4.7791 20 6 4.1108 3.4959 5.9853 21 6 3.8903 2.8439 7.1809 22 6 3.4259 1.5405 7.1863 23 6 3.1789 0.8824 5.9945 24 6 3.3942 1.5230 4.7918 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8892 33 1 3.9330 0.9286 0.8908 34 1 7.1833 4.7403 -0.5626 35 1 3.6526 1.9407 2.3366 36 1 4.4779 4.5115 5.9825 37 1 4.0806 3.3519 8.1147 38 1 3.2553 1.0345 8.1251 39 1 2.8162 -0.1347 6.0058 40 1 3.2015 1.0081 3.8622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202452990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -23.984700 kcal Electronic energy + Delta-G solvation = -23294.107477 eV Core-core repulsion = 19881.797030 eV Total energy + Delta-G solvation = -3412.310448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36798 -38.82300 -37.32755 -35.41660 -33.83379 -33.30061 -31.60567 -30.97097 -30.80712 -28.25052 -25.36579 -24.00261 -23.01172 -22.50562 -21.04024 -20.70309 -19.18350 -18.73848 -16.98320 -16.05519 -15.92760 -15.25133 -15.12926 -14.97273 -14.53067 -14.38550 -13.82190 -13.80410 -13.56934 -13.46657 -12.99753 -12.77438 -12.57878 -12.36807 -11.97453 -11.69169 -11.36957 -11.15101 -11.11511 -10.95259 -10.87231 -10.67275 -10.56508 -10.22228 -10.10884 -9.76797 -9.07040 -8.99555 -8.87987 -8.76092 -8.14659 -7.11854 -5.99622 -3.82518 0.88208 1.30222 3.04239 3.34759 3.43591 3.48153 3.54182 3.90435 4.41793 4.75064 4.78865 4.83877 4.85419 4.99962 5.14271 5.17781 5.30080 5.31387 5.40460 5.42825 5.53094 5.62684 5.73839 5.90528 5.92581 5.99546 6.04614 6.08402 6.23754 6.27081 6.34300 6.35676 6.37061 6.59825 6.77538 6.81109 7.08654 7.44518 7.69671 8.30090 8.68011 9.10493 9.34322 9.68167 10.38353 11.05581 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.005604 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.489478 B = 4995.532197 C = 6769.951931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.109 3.891 5 N -0.463 5.463 6 C -0.340 4.340 7 H 0.082 0.918 8 C 0.065 3.935 9 N -0.821 5.821 10 Si 0.908 3.092 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.286 1.286 14 C 0.649 3.351 15 O -0.503 6.503 16 N -0.688 5.688 17 C 0.554 3.446 18 O -0.478 6.478 19 C -0.124 4.124 20 C -0.062 4.062 21 C -0.129 4.129 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.088 4.088 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.391 0.609 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.747 -11.585 10.907 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.178 4.178 4 C -0.016 4.016 5 N -0.190 5.190 6 C -0.468 4.468 7 H 0.100 0.900 8 C -0.146 4.146 9 N -0.455 5.455 10 Si 0.735 3.265 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.213 1.213 14 C 0.352 3.648 15 O -0.372 6.372 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.349 6.349 19 C -0.128 4.128 20 C -0.081 4.081 21 C -0.147 4.147 22 C -0.121 4.121 23 C -0.146 4.146 24 C -0.107 4.107 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.957 -9.969 10.844 16.742 hybrid contribution -0.046 -0.094 -0.576 0.586 sum -8.003 -10.063 10.268 16.454 Atomic orbital electron populations 1.21765 0.96295 1.00950 1.01804 1.21491 0.95478 0.97304 1.01746 1.22129 0.97239 0.95792 1.02638 1.21507 0.92642 0.86491 1.00994 1.42533 1.63729 1.09079 1.03611 1.18883 1.05663 1.31791 0.90417 0.90009 1.25225 0.93730 0.98518 0.97122 1.69925 1.05653 1.34118 1.35798 0.86215 0.77723 0.81502 0.81017 1.19609 1.20747 1.21271 1.16274 0.83842 0.85174 0.79462 1.90892 1.44335 1.18070 1.83910 1.44540 1.65673 1.17720 1.07598 1.18207 0.77877 0.86781 0.83167 1.90850 1.42144 1.14902 1.86984 1.20182 1.03602 0.95039 0.93946 1.21338 0.95581 1.00306 0.90848 1.21146 1.00471 0.95159 0.97893 1.21331 0.97701 0.94828 0.98194 1.21077 1.01141 1.00200 0.92156 1.21362 0.97166 0.93520 0.98648 0.93228 0.92961 0.92811 0.91946 0.92385 0.92594 0.91237 0.90671 0.93828 0.92678 0.77335 0.84567 0.85446 0.85788 0.85475 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.14 -2.12 5.54 -26.74 -0.15 -2.27 16 4 C 0.11 2.00 5.08 -4.04 -0.02 1.98 16 5 N -0.46 -11.54 2.52 -120.19 -0.30 -11.85 16 6 C -0.34 -9.39 9.29 -14.93 -0.14 -9.53 16 7 H 0.08 2.14 7.88 -52.49 -0.41 1.73 16 8 C 0.07 1.88 4.46 -17.47 -0.08 1.80 16 9 N -0.82 -25.39 11.21 55.49 0.62 -24.77 16 10 Si 0.91 22.40 29.59 -169.99 -5.03 17.37 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.65 17.36 7.58 -86.92 -0.66 16.70 16 15 O -0.50 -16.17 11.98 -18.38 -0.22 -16.39 16 16 N -0.69 -14.45 5.06 -16.66 -0.08 -14.53 16 17 C 0.55 11.73 7.68 -12.37 -0.10 11.64 16 18 O -0.48 -12.45 14.81 -18.35 -0.27 -12.72 16 19 C -0.12 -1.96 5.87 -104.98 -0.62 -2.57 16 20 C -0.06 -0.88 9.59 -39.17 -0.38 -1.25 16 21 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 22 C -0.10 -0.96 10.04 -39.49 -0.40 -1.36 16 23 C -0.13 -1.26 10.03 -39.64 -0.40 -1.65 16 24 C -0.09 -1.08 9.54 -39.17 -0.37 -1.45 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.38 8.04 -51.92 -0.42 0.96 16 33 H 0.04 0.70 6.48 -51.93 -0.34 0.36 16 34 H 0.26 7.88 8.32 -40.82 -0.34 7.54 16 35 H 0.39 6.46 4.54 -40.82 -0.19 6.27 16 36 H 0.14 2.00 7.66 -52.49 -0.40 1.60 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.30 6.43 -52.48 -0.34 0.96 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -37.61 337.60 -9.14 -46.75 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.46 Total: 3.57 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -3.49 Total: 7.48 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.23 Total: -51.15 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.49 Total: -29.11 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.61 -9.14 -46.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202452990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.769 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds