Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47535 * 2 1 4 4 C 1.52994 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.37141 * 120.00014 * 270.00732 * 5 4 3 7 7 H 1.07997 * 120.00210 * 41.94619 * 6 5 4 8 8 C 1.38915 * 119.99736 * 221.94769 * 6 5 4 9 9 N 1.31446 * 119.99835 * 16.52062 * 8 6 5 10 10 Si 1.86795 * 119.99614 * 196.52808 * 8 6 5 11 11 H 1.48503 * 109.47728 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47462 * 119.99971 * 10 8 6 13 13 H 1.48508 * 109.46922 * 239.99807 * 10 8 6 14 14 C 1.34777 * 120.00046 * 89.99621 * 5 4 3 15 15 O 1.21542 * 120.00207 * 175.36329 * 14 5 4 16 16 N 1.34776 * 119.99875 * 355.36822 * 14 5 4 17 17 C 1.34774 * 120.00257 * 185.10142 * 16 14 5 18 18 O 1.21514 * 119.99737 * 5.14529 * 17 16 14 19 19 C 1.47767 * 120.00363 * 185.14935 * 17 16 14 20 20 C 1.39611 * 120.14668 * 174.24461 * 19 17 16 21 21 C 1.37952 * 119.84617 * 179.97438 * 20 19 17 22 22 C 1.38367 * 120.14853 * 0.02562 * 21 20 19 23 23 C 1.38364 * 120.30320 * 359.97438 * 22 21 20 24 24 C 1.37952 * 120.14447 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46880 * 300.00114 * 1 2 3 27 27 H 1.09002 * 109.47013 * 59.99428 * 1 2 3 28 28 H 1.09006 * 109.46880 * 239.99886 * 2 1 3 29 29 H 1.09002 * 109.47013 * 120.00572 * 2 1 3 30 30 H 1.09008 * 109.46623 * 60.00074 * 3 2 1 31 31 H 1.08996 * 109.47089 * 300.00567 * 3 2 1 32 32 H 1.09008 * 109.47066 * 60.00553 * 4 3 2 33 33 H 1.08996 * 109.47695 * 300.00403 * 4 3 2 34 34 H 0.97001 * 119.99608 * 184.88629 * 9 8 6 35 35 H 0.97003 * 119.99988 * 5.10679 * 16 14 5 36 36 H 1.07993 * 120.08172 * 359.70473 * 20 19 17 37 37 H 1.08003 * 119.92420 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.84831 * 179.97438 * 22 21 20 39 39 H 1.07989 * 119.92722 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.07409 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.2875 3.4704 -1.1861 7 1 3.5875 3.3658 -2.0019 8 6 5.4199 4.2603 -1.3396 9 7 6.4233 4.1409 -0.4989 10 14 5.5164 5.4922 -2.7405 11 1 4.2662 5.4321 -3.5397 12 1 5.6850 6.8596 -2.1865 13 1 6.6751 5.1638 -3.6094 14 6 4.2826 3.4586 1.1687 15 8 4.7671 4.5733 1.1710 16 7 3.9696 2.8575 2.3337 17 6 4.0971 3.5300 3.4947 18 8 4.4040 4.7057 3.4851 19 6 3.8637 2.8378 4.7791 20 6 4.1108 3.4959 5.9853 21 6 3.8903 2.8439 7.1809 22 6 3.4259 1.5405 7.1863 23 6 3.1789 0.8824 5.9945 24 6 3.3942 1.5230 4.7918 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9284 -0.8892 33 1 3.9330 0.9286 0.8908 34 1 7.1833 4.7403 -0.5626 35 1 3.6526 1.9407 2.3366 36 1 4.4779 4.5115 5.9825 37 1 4.0806 3.3519 8.1147 38 1 3.2553 1.0345 8.1251 39 1 2.8162 -0.1347 6.0058 40 1 3.2015 1.0081 3.8622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202452990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -48.116092 kcal Electronic energy + Delta-G solvation = -23295.153893 eV Core-core repulsion = 19881.797030 eV Total energy + Delta-G solvation = -3413.356863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03651 -40.14520 -38.89768 -36.98083 -35.68603 -34.97201 -33.45222 -32.02731 -31.85733 -29.64259 -27.26188 -25.45796 -24.31257 -23.47442 -22.45370 -21.88380 -21.01003 -20.34493 -18.50743 -17.85589 -17.19975 -16.95060 -16.49399 -16.37365 -16.10810 -15.63829 -15.39639 -15.17365 -15.03375 -14.62169 -14.33301 -14.26716 -13.86725 -13.56730 -13.38306 -13.19431 -12.91773 -12.69343 -12.62659 -12.22737 -12.15875 -12.05712 -12.02245 -11.80697 -11.53027 -11.35517 -10.87202 -10.78215 -10.22876 -9.95919 -9.93816 -9.20784 -8.16608 -6.01962 -0.18890 0.42433 1.35928 1.44139 1.52368 1.59422 1.84737 2.42682 2.72876 3.00300 3.28420 3.35126 3.66920 3.89571 4.02938 4.06343 4.18200 4.26844 4.35087 4.46252 4.47784 4.53303 4.68116 4.83501 4.89347 4.97963 5.04378 5.07360 5.20155 5.31163 5.36049 5.38869 5.43718 5.45544 5.49986 5.50963 5.58609 5.85691 5.97664 6.23254 6.86609 7.07685 7.35548 7.66108 8.35112 8.87716 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.005604 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.489478 B = 4995.532197 C = 6769.951931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.103 3.897 5 N -0.473 5.473 6 C -0.348 4.348 7 H 0.093 0.907 8 C 0.009 3.991 9 N -0.864 5.864 10 Si 0.970 3.030 11 H -0.250 1.250 12 H -0.302 1.302 13 H -0.273 1.273 14 C 0.640 3.360 15 O -0.569 6.569 16 N -0.673 5.673 17 C 0.549 3.451 18 O -0.542 6.542 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.084 4.084 23 C -0.119 4.119 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.254 0.746 35 H 0.413 0.587 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 -15.361 12.521 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.166 4.166 4 C -0.020 4.020 5 N -0.199 5.199 6 C -0.476 4.476 7 H 0.111 0.889 8 C -0.197 4.197 9 N -0.500 5.500 10 Si 0.795 3.205 11 H -0.173 1.173 12 H -0.229 1.229 13 H -0.198 1.198 14 C 0.343 3.657 15 O -0.443 6.443 16 N -0.342 5.342 17 C 0.339 3.661 18 O -0.418 6.418 19 C -0.158 4.158 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.105 4.105 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.107 -13.859 12.445 21.192 hybrid contribution 0.510 0.952 -0.941 1.433 sum -9.597 -12.906 11.504 19.774 Atomic orbital electron populations 1.21754 0.95220 1.02218 1.01528 1.21458 0.96322 0.94303 1.03193 1.21993 0.94519 0.98593 1.01524 1.21801 0.94766 0.83028 1.02408 1.42788 1.63111 1.11443 1.02556 1.19279 1.05209 1.31816 0.91341 0.88931 1.26142 0.93646 1.00452 0.99451 1.70057 1.06365 1.35066 1.38466 0.85265 0.78975 0.77836 0.78443 1.17323 1.22930 1.19813 1.16640 0.83208 0.84817 0.81035 1.90839 1.47135 1.21031 1.85273 1.44149 1.65214 1.18556 1.06253 1.19221 0.75881 0.86301 0.84704 1.90803 1.45177 1.17871 1.87904 1.19836 1.08021 0.96886 0.91081 1.21361 0.96902 0.99889 0.92049 1.21456 0.99618 0.96040 0.97264 1.21892 0.94489 0.93785 0.99980 1.21560 0.99435 1.01705 0.90932 1.21586 0.96278 0.91763 1.00872 0.91160 0.92829 0.93624 0.91411 0.90064 0.93002 0.93187 0.90456 0.91180 0.93674 0.74750 0.86949 0.82765 0.81534 0.81379 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.92 16 2 C -0.11 -2.27 5.93 30.59 0.18 -2.09 16 3 C -0.13 -3.70 5.54 30.59 0.17 -3.53 16 4 C 0.10 3.69 5.08 86.38 0.44 4.13 16 5 N -0.47 -24.11 2.52 -652.45 -1.65 -25.76 16 6 C -0.35 -19.66 9.29 84.03 0.78 -18.88 16 7 H 0.09 4.89 7.88 -2.91 -0.02 4.87 16 8 C 0.01 0.56 4.46 84.91 0.38 0.93 16 9 N -0.86 -56.09 11.21 21.66 0.24 -55.85 16 10 Si 0.97 47.53 29.59 68.60 2.03 49.56 16 11 H -0.25 -11.20 7.11 99.48 0.71 -10.50 16 12 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.64 35.71 7.58 179.05 1.36 37.07 16 15 O -0.57 -38.93 11.98 18.82 0.23 -38.71 16 16 N -0.67 -29.14 5.06 -443.20 -2.24 -31.38 16 17 C 0.55 24.55 7.68 86.76 0.67 25.22 16 18 O -0.54 -30.69 14.81 18.90 0.28 -30.41 16 19 C -0.15 -4.91 5.87 -20.09 -0.12 -5.03 16 20 C -0.08 -2.37 9.59 22.53 0.22 -2.16 16 21 C -0.13 -2.35 10.03 22.23 0.22 -2.13 16 22 C -0.08 -1.13 10.04 22.33 0.22 -0.91 16 23 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 24 C -0.09 -1.87 9.54 22.53 0.21 -1.65 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.75 8.04 -2.38 -0.02 2.73 16 33 H 0.07 2.12 6.48 -2.39 -0.02 2.10 16 34 H 0.25 16.16 8.32 -92.71 -0.77 15.39 16 35 H 0.41 13.38 4.54 -92.71 -0.42 12.96 16 36 H 0.11 3.64 7.66 -2.91 -0.02 3.62 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.17 1.14 8.06 -2.92 -0.02 1.11 16 40 H 0.14 2.45 6.43 -2.91 -0.02 2.43 16 Total: -1.00 -91.05 337.60 5.18 -85.86 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.62 Total: 19.11 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 5.67 Total: 27.57 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -3.64 Total: -112.98 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: 0.51 Total: -69.12 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -91.05 5.18 -85.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202452990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.747 kcal (2) G-P(sol) polarization free energy of solvation -91.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds