Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47206 * 2 1 4 4 H 1.09002 * 109.46508 * 304.16611 * 3 2 1 5 5 C 1.50701 * 109.47065 * 184.17118 * 3 2 1 6 6 H 1.08000 * 120.00597 * 239.99786 * 5 3 2 7 7 C 1.37880 * 120.00080 * 59.99499 * 5 3 2 8 8 N 1.31513 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46747 * 120.00150 * 9 7 5 12 12 H 1.48502 * 109.47353 * 240.00307 * 9 7 5 13 13 N 1.46894 * 109.47354 * 64.17060 * 3 2 1 14 14 C 1.46901 * 110.99908 * 205.87107 * 13 3 2 15 15 H 1.08994 * 110.88455 * 327.50807 * 14 13 3 16 16 C 1.54353 * 110.81874 * 91.02355 * 14 13 3 17 17 C 1.51368 * 105.17023 * 144.57123 * 16 14 13 18 18 C 1.38497 * 130.39036 * 162.80749 * 17 16 14 19 19 C 1.38109 * 120.21489 * 179.68157 * 18 17 16 20 20 C 1.38255 * 119.93240 * 0.59416 * 19 18 17 21 21 N 1.48018 * 120.03368 * 179.69967 * 20 19 18 22 22 O 1.21800 * 119.99738 * 179.72718 * 21 20 19 23 23 O 1.21801 * 119.99798 * 359.45448 * 21 20 19 24 24 C 1.38109 * 119.93357 * 359.43298 * 20 19 18 25 25 C 1.38212 * 109.75684 * 342.81271 * 17 16 14 26 26 C 1.51364 * 109.76197 * 359.97438 * 25 17 16 27 27 H 1.08999 * 109.46844 * 54.79654 * 1 2 3 28 28 H 1.09000 * 109.47091 * 174.79628 * 1 2 3 29 29 H 1.09004 * 109.46841 * 294.79970 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99203 * 2 1 3 31 31 H 1.09004 * 109.46819 * 119.99765 * 2 1 3 32 32 H 0.97001 * 120.00466 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99873 * 81.91771 * 13 3 2 34 34 H 1.09002 * 110.29728 * 263.49111 * 16 14 13 35 35 H 1.09002 * 110.30550 * 25.54628 * 16 14 13 36 36 H 1.08000 * 119.89407 * 0.02624 * 18 17 16 37 37 H 1.08001 * 120.03493 * 180.29796 * 19 18 17 38 38 H 1.07995 * 119.89021 * 180.29465 * 24 20 19 39 39 H 1.08999 * 110.30591 * 136.11973 * 26 25 17 40 40 H 1.09007 * 110.30235 * 258.26374 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9773 -0.8503 5 6 3.5435 1.4437 -0.1033 6 1 4.1383 1.8920 0.6787 7 6 4.1599 0.8724 -1.1964 8 7 3.4357 0.3268 -2.1491 9 14 6.0234 0.8745 -1.3248 10 1 6.6010 1.5453 -0.1325 11 1 6.5165 -0.5246 -1.3925 12 1 6.4343 1.6040 -2.5514 13 7 1.6344 2.1053 1.2466 14 6 1.5380 3.5595 1.0623 15 1 2.2703 3.9083 0.3342 16 6 0.1095 3.9657 0.6415 17 6 -0.1363 5.3005 1.3115 18 6 -1.0887 6.2724 1.0534 19 6 -1.1271 7.4265 1.8110 20 6 -0.2045 7.6186 2.8226 21 7 -0.2394 8.8577 3.6316 22 8 0.5706 9.0241 4.5259 23 8 -1.0750 9.7130 3.3997 24 6 0.7463 6.6509 3.0812 25 6 0.7825 5.4901 2.3265 26 6 1.7083 4.2954 2.4084 27 1 -0.3633 0.5924 -0.8397 28 1 -0.3633 -1.0234 -0.0932 29 1 -0.3633 0.4311 0.9329 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8693 -0.0755 -2.9179 33 1 2.2662 1.8773 1.9995 34 1 0.0496 4.0696 -0.4419 35 1 -0.6120 3.2270 0.9905 36 1 -1.8072 6.1248 0.2607 37 1 -1.8740 8.1803 1.6103 38 1 1.4636 6.7996 3.8747 39 1 2.7402 4.6242 2.5313 40 1 1.4164 3.6467 3.2344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254579401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = 9.836738 kcal Electronic energy + Delta-G solvation = -22574.063482 eV Core-core repulsion = 19163.219642 eV Total energy + Delta-G solvation = -3410.843840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.25010 -40.39650 -37.08901 -36.63161 -34.92443 -32.22032 -32.03485 -31.01208 -28.83697 -27.75382 -26.19239 -25.26078 -23.06292 -22.35393 -21.50461 -20.33004 -19.63541 -18.81201 -18.67400 -17.59862 -16.77913 -16.04670 -15.84815 -15.39669 -14.72496 -14.46550 -13.83605 -13.60860 -13.48925 -13.22615 -12.85226 -12.77038 -12.09305 -11.83774 -11.70279 -11.62083 -11.49654 -11.35049 -11.22565 -11.22407 -11.20025 -10.93947 -10.84616 -10.65860 -10.22919 -9.71387 -9.64420 -9.46267 -9.22572 -9.02090 -8.50399 -7.52773 -6.12872 -4.26203 -0.22695 0.82141 1.28749 1.33124 3.14529 3.17566 3.27113 3.29120 4.03472 4.25839 4.29145 4.39047 4.75793 4.78445 4.85262 5.05044 5.15145 5.21789 5.37634 5.44757 5.61403 5.75687 5.82097 5.86140 6.00345 6.02733 6.15106 6.26641 6.27845 6.37067 6.42067 6.46170 6.58489 6.97417 7.03829 7.29718 7.44596 7.57261 7.64774 7.91862 7.97694 8.16080 8.46292 8.85239 9.42568 10.87646 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003451 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.798465 B = 8111.733100 C = 8792.809482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.096 3.904 15 H 0.067 0.933 16 C -0.084 4.084 17 C -0.027 4.027 18 C -0.112 4.112 19 C -0.057 4.057 20 C -0.054 4.054 21 N 0.034 4.966 22 O -0.167 6.167 23 O -0.169 6.169 24 C -0.046 4.046 25 C -0.088 4.088 26 C -0.086 4.086 27 H 0.036 0.964 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.334 0.666 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 8.706 6.248 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.015 4.015 15 H 0.085 0.915 16 C -0.121 4.121 17 C -0.028 4.028 18 C -0.130 4.130 19 C -0.076 4.076 20 C -0.137 4.137 21 N 0.552 4.448 22 O -0.382 6.382 23 O -0.383 6.383 24 C -0.065 4.065 25 C -0.089 4.089 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.098 0.902 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.587 7.901 5.578 12.934 hybrid contribution 1.995 0.637 -0.005 2.095 sum -6.592 8.538 5.573 12.141 Atomic orbital electron populations 1.21699 0.98986 0.98436 1.00243 1.21502 0.92068 0.99134 1.01833 1.19213 0.92823 0.91219 0.85999 0.94854 1.21878 0.92568 1.38389 1.06022 0.92739 1.24926 0.98050 0.94838 0.95602 1.69873 1.34924 1.37758 1.09529 0.86606 0.85934 0.77854 0.77997 1.19898 1.20883 1.21008 1.60981 1.55451 1.04210 1.10288 1.22017 0.94601 0.90620 0.94246 0.91547 1.21407 0.99495 0.90879 1.00322 1.21377 0.91880 0.95725 0.93784 1.20689 0.99650 0.92177 1.00505 1.20889 0.96559 0.98243 0.91942 1.20844 1.04695 0.88119 1.00078 1.43609 0.99065 1.02122 1.00011 1.94531 1.35043 1.84585 1.24071 1.94515 1.32335 1.37528 1.73953 1.20402 0.96227 0.90859 0.99006 1.20634 0.98252 0.94760 0.95282 1.21398 0.98008 0.92654 1.00261 0.94447 0.95608 0.93534 0.89119 0.95001 0.92818 0.84878 0.90012 0.87884 0.83732 0.83102 0.83370 0.90157 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.73 37.16 0.36 -2.16 16 2 C -0.11 -2.33 5.45 -26.73 -0.15 -2.48 16 3 C 0.22 4.72 1.86 -68.87 -0.13 4.60 16 4 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 5 C -0.55 -13.58 8.36 -34.44 -0.29 -13.86 16 6 H 0.05 1.34 7.73 -52.49 -0.41 0.93 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.53 11.30 55.43 0.63 -22.90 16 9 Si 0.89 20.06 29.54 -169.99 -5.02 15.03 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -11.96 5.57 -99.47 -0.55 -12.52 16 14 C 0.10 1.47 3.14 -66.29 -0.21 1.26 16 15 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16 16 C -0.08 -1.10 6.49 -26.85 -0.17 -1.28 16 17 C -0.03 -0.32 6.14 -104.21 -0.64 -0.96 16 18 C -0.11 -1.12 10.04 -39.53 -0.40 -1.52 16 19 C -0.06 -0.60 9.55 -39.62 -0.38 -0.98 16 20 C -0.05 -0.67 6.85 -79.99 -0.55 -1.22 16 21 N 0.03 0.48 4.45 33.94 0.15 0.63 16 22 O -0.17 -2.46 18.45 -29.46 -0.54 -3.00 16 23 O -0.17 -2.40 18.45 -29.46 -0.54 -2.95 16 24 C -0.05 -0.54 9.55 -39.53 -0.38 -0.92 16 25 C -0.09 -1.06 6.14 -104.21 -0.64 -1.70 16 26 C -0.09 -1.07 6.22 -26.85 -0.17 -1.24 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 30 H 0.09 2.26 5.97 -51.93 -0.31 1.95 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.33 5.83 8.08 -39.29 -0.32 5.51 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.38 8.08 -51.93 -0.42 0.96 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.15 1.31 7.62 -52.49 -0.40 0.91 16 38 H 0.15 1.59 7.60 -52.49 -0.40 1.19 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -26.50 337.56 -10.18 -36.68 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.56 Total: 4.72 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.82 Total: -20.79 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.22 Total: -34.79 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -1.09 Total: -5.95 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.50 -10.18 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.518 kcal (2) G-P(sol) polarization free energy of solvation -26.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds