Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47206 * 2 1 4 4 H 1.09002 * 109.46508 * 304.16611 * 3 2 1 5 5 C 1.50701 * 109.47065 * 184.17118 * 3 2 1 6 6 H 1.08000 * 120.00597 * 239.99786 * 5 3 2 7 7 C 1.37880 * 120.00080 * 59.99499 * 5 3 2 8 8 N 1.31513 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46747 * 120.00150 * 9 7 5 12 12 H 1.48502 * 109.47353 * 240.00307 * 9 7 5 13 13 N 1.46894 * 109.47354 * 64.17060 * 3 2 1 14 14 C 1.46901 * 110.99908 * 205.87107 * 13 3 2 15 15 H 1.08994 * 110.88455 * 327.50807 * 14 13 3 16 16 C 1.54353 * 110.81874 * 91.02355 * 14 13 3 17 17 C 1.51368 * 105.17023 * 144.57123 * 16 14 13 18 18 C 1.38497 * 130.39036 * 162.80749 * 17 16 14 19 19 C 1.38109 * 120.21489 * 179.68157 * 18 17 16 20 20 C 1.38255 * 119.93240 * 0.59416 * 19 18 17 21 21 N 1.48018 * 120.03368 * 179.69967 * 20 19 18 22 22 O 1.21800 * 119.99738 * 179.72718 * 21 20 19 23 23 O 1.21801 * 119.99798 * 359.45448 * 21 20 19 24 24 C 1.38109 * 119.93357 * 359.43298 * 20 19 18 25 25 C 1.38212 * 109.75684 * 342.81271 * 17 16 14 26 26 C 1.51364 * 109.76197 * 359.97438 * 25 17 16 27 27 H 1.08999 * 109.46844 * 54.79654 * 1 2 3 28 28 H 1.09000 * 109.47091 * 174.79628 * 1 2 3 29 29 H 1.09004 * 109.46841 * 294.79970 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99203 * 2 1 3 31 31 H 1.09004 * 109.46819 * 119.99765 * 2 1 3 32 32 H 0.97001 * 120.00466 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99873 * 81.91771 * 13 3 2 34 34 H 1.09002 * 110.29728 * 263.49111 * 16 14 13 35 35 H 1.09002 * 110.30550 * 25.54628 * 16 14 13 36 36 H 1.08000 * 119.89407 * 0.02624 * 18 17 16 37 37 H 1.08001 * 120.03493 * 180.29796 * 19 18 17 38 38 H 1.07995 * 119.89021 * 180.29465 * 24 20 19 39 39 H 1.08999 * 110.30591 * 136.11973 * 26 25 17 40 40 H 1.09007 * 110.30235 * 258.26374 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9773 -0.8503 5 6 3.5435 1.4437 -0.1033 6 1 4.1383 1.8920 0.6787 7 6 4.1599 0.8724 -1.1964 8 7 3.4357 0.3268 -2.1491 9 14 6.0234 0.8745 -1.3248 10 1 6.6010 1.5453 -0.1325 11 1 6.5165 -0.5246 -1.3925 12 1 6.4343 1.6040 -2.5514 13 7 1.6344 2.1053 1.2466 14 6 1.5380 3.5595 1.0623 15 1 2.2703 3.9083 0.3342 16 6 0.1095 3.9657 0.6415 17 6 -0.1363 5.3005 1.3115 18 6 -1.0887 6.2724 1.0534 19 6 -1.1271 7.4265 1.8110 20 6 -0.2045 7.6186 2.8226 21 7 -0.2394 8.8577 3.6316 22 8 0.5706 9.0241 4.5259 23 8 -1.0750 9.7130 3.3997 24 6 0.7463 6.6509 3.0812 25 6 0.7825 5.4901 2.3265 26 6 1.7083 4.2954 2.4084 27 1 -0.3633 0.5924 -0.8397 28 1 -0.3633 -1.0234 -0.0932 29 1 -0.3633 0.4311 0.9329 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8693 -0.0755 -2.9179 33 1 2.2662 1.8773 1.9995 34 1 0.0496 4.0696 -0.4419 35 1 -0.6120 3.2270 0.9905 36 1 -1.8072 6.1248 0.2607 37 1 -1.8740 8.1803 1.6103 38 1 1.4636 6.7996 3.8747 39 1 2.7402 4.6242 2.5313 40 1 1.4164 3.6467 3.2344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254579401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = -2.369208 kcal Electronic energy + Delta-G solvation = -22574.592772 eV Core-core repulsion = 19163.219642 eV Total energy + Delta-G solvation = -3411.373130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.28477 -41.38450 -38.42176 -37.70344 -36.34449 -33.91648 -33.02467 -32.44343 -30.05260 -28.87587 -27.76710 -26.41870 -24.65574 -23.40865 -22.51251 -21.53453 -21.28899 -19.85117 -19.71412 -18.64224 -18.61655 -17.09837 -17.04744 -16.70989 -16.24111 -15.35696 -15.24837 -14.92290 -14.75137 -14.57315 -14.18761 -13.80289 -13.44125 -13.28491 -13.05729 -12.99332 -12.89073 -12.73529 -12.57665 -12.42932 -12.33668 -12.32761 -12.17141 -12.10341 -11.82894 -11.46307 -11.32764 -10.98207 -10.44968 -10.33501 -9.99552 -9.10682 -8.05902 -6.26727 -1.24271 -0.03995 0.28643 0.34324 1.36535 1.41284 1.48969 2.24623 2.39895 3.09456 3.14329 3.24861 3.53423 3.67545 3.81512 3.90263 3.99777 4.21741 4.38010 4.49481 4.65777 4.70592 4.76062 4.78493 4.80688 4.82825 4.88776 4.98839 5.03427 5.12653 5.18356 5.24290 5.31481 5.46968 5.49642 5.56582 5.67479 5.80958 6.12738 6.22245 6.39109 6.47823 6.82453 7.02720 7.45227 8.90778 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003451 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.798465 B = 8111.733100 C = 8792.809482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.558 4.558 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.667 5.667 14 C 0.090 3.910 15 H 0.036 0.964 16 C -0.075 4.075 17 C -0.030 4.030 18 C -0.100 4.100 19 C -0.049 4.049 20 C -0.066 4.066 21 N 0.035 4.965 22 O -0.192 6.192 23 O -0.170 6.170 24 C -0.047 4.047 25 C -0.093 4.093 26 C -0.076 4.076 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.083 0.917 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 9.342 6.793 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.024 0.976 5 C -0.597 4.597 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.296 5.296 14 C -0.020 4.020 15 H 0.055 0.945 16 C -0.113 4.113 17 C -0.031 4.031 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.149 4.149 21 N 0.549 4.451 22 O -0.402 6.402 23 O -0.386 6.386 24 C -0.066 4.066 25 C -0.095 4.095 26 C -0.113 4.113 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.193 0.807 37 H 0.190 0.810 38 H 0.173 0.827 39 H 0.102 0.898 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.549 8.550 6.166 14.223 hybrid contribution 2.266 0.455 -0.204 2.320 sum -7.283 9.005 5.962 13.026 Atomic orbital electron populations 1.21554 0.96230 0.99453 1.00860 1.21366 0.94516 0.98465 0.99944 1.18933 0.91181 0.91427 0.86844 0.97633 1.22247 0.94258 1.37538 1.05672 0.92993 1.25592 1.01587 0.94962 0.95653 1.69996 1.36184 1.38670 1.09961 0.85734 0.81783 0.77620 0.77818 1.19434 1.20854 1.21107 1.60904 1.54780 1.05637 1.08326 1.22002 0.95413 0.89220 0.95407 0.94549 1.21230 0.97912 0.91896 1.00240 1.21325 0.92626 0.95497 0.93662 1.20965 0.99275 0.91016 1.00616 1.21188 0.96167 0.98673 0.90807 1.21022 1.05702 0.87537 1.00642 1.43836 0.98751 1.02520 0.99965 1.94530 1.35604 1.85092 1.24997 1.94495 1.32229 1.38027 1.73834 1.20437 0.96377 0.90592 0.99175 1.20515 0.98440 0.94710 0.95812 1.21251 0.98584 0.92810 0.98687 0.94777 0.94223 0.92023 0.92422 0.95387 0.93001 0.84688 0.90387 0.87630 0.80710 0.80976 0.82718 0.89800 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 9.73 71.98 0.70 -3.73 16 2 C -0.10 -4.57 5.45 30.59 0.17 -4.41 16 3 C 0.22 9.98 1.86 44.17 0.08 10.07 16 4 H 0.01 0.28 7.85 -2.39 -0.02 0.27 16 5 C -0.56 -27.88 8.36 25.60 0.21 -27.67 16 6 H 0.05 2.56 7.73 -2.91 -0.02 2.54 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -49.41 11.30 21.45 0.24 -49.16 16 9 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.67 -23.18 5.57 -468.62 -2.61 -25.79 16 14 C 0.09 2.72 3.14 45.83 0.14 2.86 16 15 H 0.04 1.32 7.75 -2.39 -0.02 1.30 16 16 C -0.08 -1.89 6.49 30.52 0.20 -1.69 16 17 C -0.03 -0.65 6.14 -19.60 -0.12 -0.77 16 18 C -0.10 -1.68 10.04 22.30 0.22 -1.46 16 19 C -0.05 -0.89 9.55 22.24 0.21 -0.67 16 20 C -0.07 -1.49 6.85 36.35 0.25 -1.24 16 21 N 0.03 0.93 4.45 -46.52 -0.21 0.72 16 22 O -0.19 -5.52 18.45 18.89 0.35 -5.17 16 23 O -0.17 -4.56 18.45 18.88 0.35 -4.21 16 24 C -0.05 -1.03 9.55 22.30 0.21 -0.82 16 25 C -0.09 -2.09 6.14 -19.60 -0.12 -2.21 16 26 C -0.08 -1.80 6.22 30.52 0.19 -1.61 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 2.01 7.88 -2.39 -0.02 1.99 16 30 H 0.06 2.93 5.97 -2.39 -0.01 2.92 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 33 H 0.34 11.48 8.08 -89.69 -0.72 10.76 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.11 2.62 8.08 -2.39 -0.02 2.60 16 36 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.17 2.36 7.62 -2.91 -0.02 2.34 16 38 H 0.16 3.13 7.60 -2.91 -0.02 3.11 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 2.28 8.04 -2.38 -0.02 2.26 16 Total: -1.00 -57.06 337.56 3.28 -53.78 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.33 Total: 18.09 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 2.80 Total: -31.74 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.57 Total: -74.24 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.70 Total: -9.38 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -57.06 3.28 -53.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.415 kcal (2) G-P(sol) polarization free energy of solvation -57.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds