Wall clock time and date at job start Tue Mar 31 2020 06:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 H 1.09000 * 109.47053 * 54.53895 * 3 2 1 5 5 C 1.50700 * 109.47056 * 174.53588 * 3 2 1 6 6 H 1.08001 * 119.99959 * 120.00068 * 5 3 2 7 7 C 1.37875 * 120.00003 * 300.00219 * 5 3 2 8 8 N 1.31520 * 119.99861 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00056 * 359.72292 * 7 5 3 10 10 H 1.48497 * 109.47225 * 90.00355 * 9 7 5 11 11 H 1.48504 * 109.47200 * 210.00157 * 9 7 5 12 12 H 1.48500 * 109.47241 * 330.00346 * 9 7 5 13 13 N 1.46901 * 109.47207 * 294.53785 * 3 2 1 14 14 C 1.46904 * 111.00055 * 154.93290 * 13 3 2 15 15 H 1.08994 * 110.72710 * 35.99208 * 14 13 3 16 16 C 1.54339 * 110.81855 * 272.58685 * 14 13 3 17 17 C 1.51365 * 105.17360 * 215.43347 * 16 14 13 18 18 C 1.38492 * 130.39913 * 197.18146 * 17 16 14 19 19 C 1.38110 * 120.21993 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.93187 * 359.94231 * 19 18 17 21 21 N 1.48024 * 120.03067 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99863 * 179.97438 * 21 20 19 23 23 O 1.21801 * 119.99951 * 359.97273 * 21 20 19 24 24 C 1.38098 * 119.93689 * 0.02562 * 20 19 18 25 25 C 1.38225 * 109.75507 * 17.17696 * 17 16 14 26 26 C 1.51366 * 109.75761 * 0.02562 * 25 17 16 27 27 H 1.08997 * 109.47125 * 181.46279 * 1 2 3 28 28 H 1.08995 * 109.47011 * 301.46034 * 1 2 3 29 29 H 1.09002 * 109.47166 * 61.46359 * 1 2 3 30 30 H 1.09004 * 109.47049 * 240.00212 * 2 1 3 31 31 H 1.09001 * 109.47085 * 120.00499 * 2 1 3 32 32 H 0.96998 * 119.99867 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00381 * 30.97485 * 13 3 2 34 34 H 1.08999 * 110.30813 * 334.35584 * 16 14 13 35 35 H 1.09003 * 110.30456 * 96.40696 * 16 14 13 36 36 H 1.07999 * 119.89485 * 359.96876 * 18 17 16 37 37 H 1.07995 * 120.03414 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.89624 * 180.02562 * 24 20 19 39 39 H 1.09004 * 110.29694 * 223.87872 * 26 25 17 40 40 H 1.08999 * 110.30232 * 101.72925 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8370 5 6 3.5409 1.4446 0.1353 6 1 4.1521 1.8871 -0.6374 7 6 4.1338 0.8816 1.2455 8 7 5.4436 0.8840 1.3638 9 14 3.0763 0.1232 2.5855 10 1 2.8512 -1.3135 2.2848 11 1 3.7670 0.2527 3.8938 12 1 1.7702 0.8274 2.6435 13 7 1.6609 2.0959 -1.2599 14 6 1.5793 3.5532 -1.0934 15 1 2.3465 3.9063 -0.4045 16 6 0.1742 3.9724 -0.6116 17 6 -0.0979 5.2981 -1.2895 18 6 -1.0331 6.2782 -1.0016 19 6 -1.0988 7.4236 -1.7704 20 6 -0.2277 7.5939 -2.8304 21 7 -0.2958 8.8210 -3.6555 22 8 0.4722 8.9705 -4.5889 23 8 -1.1198 9.6810 -3.4010 24 6 0.7060 6.6180 -3.1188 25 6 0.7726 5.4681 -2.3497 26 6 1.6887 4.2680 -2.4570 27 1 -0.3633 -1.0273 0.0262 28 1 -0.3633 0.5363 0.8766 29 1 -0.3633 0.4909 -0.9028 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8608 0.4883 2.1450 33 1 0.7926 1.7231 -1.6137 34 1 -0.5664 3.2329 -0.9162 35 1 0.1657 4.0911 0.4719 36 1 -1.7139 6.1460 -0.1737 37 1 -1.8295 8.1858 -1.5435 38 1 1.3864 6.7519 -3.9467 39 1 2.7150 4.5902 -2.6336 40 1 1.3555 3.6082 -3.2581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254579402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:01 Heat of formation + Delta-G solvation = 22.763360 kcal Electronic energy + Delta-G solvation = -22663.998353 eV Core-core repulsion = 19253.715053 eV Total energy + Delta-G solvation = -3410.283300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28478 -40.50565 -37.45119 -36.66289 -35.21100 -32.24940 -32.14350 -31.42267 -28.84656 -27.87745 -26.89825 -25.36081 -22.98108 -22.43247 -21.51990 -20.67190 -20.08036 -18.85170 -18.70516 -17.62798 -16.85806 -16.21537 -15.92370 -15.65134 -14.72522 -14.49531 -14.43108 -13.89804 -13.72336 -13.08938 -12.95923 -12.74146 -12.58961 -12.34544 -12.17853 -11.86059 -11.68970 -11.53742 -11.36991 -11.25525 -11.24980 -11.13369 -10.96693 -10.58309 -10.40595 -10.14615 -9.55551 -9.53778 -9.33879 -9.09681 -8.63500 -7.63356 -6.14461 -4.12707 -0.27825 0.76933 1.23357 1.29026 3.07890 3.16392 3.25112 3.29662 3.96388 4.17500 4.29996 4.33463 4.66223 4.67492 4.75129 4.95586 5.10873 5.15056 5.29557 5.36249 5.49581 5.57831 5.59090 5.65342 5.69070 5.73022 5.78661 5.84682 5.97433 6.09279 6.21127 6.30385 6.33336 6.37642 6.46476 6.55142 6.67877 7.02212 7.53996 7.58096 7.75545 8.05225 8.60587 8.97396 9.47615 10.98743 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.003422 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.277403 B = 8181.267596 C = 8497.340353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.137 4.137 3 C 0.190 3.810 4 H 0.003 0.997 5 C -0.501 4.501 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.663 5.663 14 C 0.101 3.899 15 H 0.104 0.896 16 C -0.125 4.125 17 C -0.033 4.033 18 C -0.110 4.110 19 C -0.059 4.059 20 C -0.051 4.051 21 N 0.033 4.967 22 O -0.164 6.164 23 O -0.168 6.168 24 C -0.045 4.045 25 C -0.086 4.086 26 C -0.075 4.075 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.264 0.736 33 H 0.323 0.677 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.088 0.912 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 7.678 -4.755 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.082 3.918 4 H 0.021 0.979 5 C -0.540 4.540 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.194 1.194 13 N -0.292 5.292 14 C -0.010 4.010 15 H 0.122 0.878 16 C -0.164 4.164 17 C -0.034 4.034 18 C -0.129 4.129 19 C -0.078 4.078 20 C -0.134 4.134 21 N 0.551 4.449 22 O -0.380 6.380 23 O -0.383 6.383 24 C -0.064 4.064 25 C -0.087 4.087 26 C -0.112 4.112 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.199 7.027 -4.482 15.610 hybrid contribution -1.391 -0.025 1.134 1.795 sum -14.590 7.002 -3.348 16.526 Atomic orbital electron populations 1.21925 0.98208 1.00742 1.00607 1.22136 0.92916 1.00397 1.02062 1.19640 0.97014 0.89304 0.85818 0.97904 1.21019 0.88975 1.37881 1.06083 0.90013 1.24965 0.94748 0.95893 0.97762 1.69879 1.08842 1.45456 1.29442 0.86965 0.80631 0.79831 0.81413 1.20528 1.22424 1.19350 1.60492 1.35994 1.00947 1.31802 1.22237 0.93927 0.89964 0.94901 0.87766 1.22244 1.00584 0.92317 1.01271 1.21194 0.92361 0.95556 0.94256 1.20678 0.99501 0.92249 1.00453 1.20877 0.96848 0.98341 0.91764 1.20873 1.05326 0.88436 0.98725 1.43608 0.98998 1.02019 1.00250 1.94539 1.37828 1.84559 1.21034 1.94517 1.32055 1.36644 1.75072 1.20432 0.95844 0.90723 0.99442 1.20791 0.98130 0.95106 0.94672 1.21210 0.98491 0.91708 0.99797 0.93484 0.93576 0.93236 0.91209 0.92648 0.92606 0.85832 0.89266 0.89663 0.83900 0.83089 0.83136 0.89380 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.72 37.16 0.36 -1.99 16 2 C -0.14 -2.64 5.02 -26.73 -0.13 -2.78 16 3 C 0.19 3.94 1.50 -68.87 -0.10 3.83 16 4 H 0.00 0.07 6.83 -51.93 -0.35 -0.28 16 5 C -0.50 -13.06 9.12 -34.44 -0.31 -13.37 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 8 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 9 Si 0.88 20.62 24.42 -169.99 -4.15 16.47 16 10 H -0.28 -6.38 6.82 56.52 0.39 -5.99 16 11 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 13 N -0.66 -11.27 6.12 -99.48 -0.61 -11.88 16 14 C 0.10 1.49 3.14 -66.30 -0.21 1.28 16 15 H 0.10 1.81 7.74 -51.93 -0.40 1.41 16 16 C -0.13 -1.48 6.34 -26.86 -0.17 -1.65 16 17 C -0.03 -0.36 6.14 -104.21 -0.64 -1.00 16 18 C -0.11 -1.04 10.04 -39.53 -0.40 -1.44 16 19 C -0.06 -0.60 9.55 -39.62 -0.38 -0.97 16 20 C -0.05 -0.61 6.85 -79.99 -0.55 -1.15 16 21 N 0.03 0.45 4.45 33.94 0.15 0.61 16 22 O -0.16 -2.37 18.45 -29.46 -0.54 -2.91 16 23 O -0.17 -2.35 18.45 -29.46 -0.54 -2.90 16 24 C -0.05 -0.52 9.55 -39.53 -0.38 -0.90 16 25 C -0.09 -0.99 6.14 -104.20 -0.64 -1.63 16 26 C -0.07 -0.93 6.49 -26.85 -0.17 -1.10 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.17 3.23 -51.93 -0.17 1.01 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 33 H 0.32 4.72 5.96 -39.29 -0.23 4.48 16 34 H 0.09 0.96 7.62 -51.93 -0.40 0.56 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.15 1.26 7.62 -52.49 -0.40 0.86 16 38 H 0.15 1.58 7.60 -52.49 -0.40 1.18 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -29.19 327.67 -9.06 -38.25 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.25 Total: 4.17 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.82 Total: -21.11 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.32 Total: -36.91 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.09 Total: -5.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.19 -9.06 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.014 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds