Wall clock time and date at job start Tue Mar 31 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 H 1.09000 * 109.47053 * 54.53895 * 3 2 1 5 5 C 1.50700 * 109.47056 * 174.53588 * 3 2 1 6 6 H 1.08001 * 119.99959 * 120.00068 * 5 3 2 7 7 C 1.37875 * 120.00003 * 300.00219 * 5 3 2 8 8 N 1.31520 * 119.99861 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00056 * 359.72292 * 7 5 3 10 10 H 1.48497 * 109.47225 * 90.00355 * 9 7 5 11 11 H 1.48504 * 109.47200 * 210.00157 * 9 7 5 12 12 H 1.48500 * 109.47241 * 330.00346 * 9 7 5 13 13 N 1.46901 * 109.47207 * 294.53785 * 3 2 1 14 14 C 1.46904 * 111.00055 * 154.93290 * 13 3 2 15 15 H 1.08994 * 110.72710 * 35.99208 * 14 13 3 16 16 C 1.54339 * 110.81855 * 272.58685 * 14 13 3 17 17 C 1.51365 * 105.17360 * 215.43347 * 16 14 13 18 18 C 1.38492 * 130.39913 * 197.18146 * 17 16 14 19 19 C 1.38110 * 120.21993 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.93187 * 359.94231 * 19 18 17 21 21 N 1.48024 * 120.03067 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99863 * 179.97438 * 21 20 19 23 23 O 1.21801 * 119.99951 * 359.97273 * 21 20 19 24 24 C 1.38098 * 119.93689 * 0.02562 * 20 19 18 25 25 C 1.38225 * 109.75507 * 17.17696 * 17 16 14 26 26 C 1.51366 * 109.75761 * 0.02562 * 25 17 16 27 27 H 1.08997 * 109.47125 * 181.46279 * 1 2 3 28 28 H 1.08995 * 109.47011 * 301.46034 * 1 2 3 29 29 H 1.09002 * 109.47166 * 61.46359 * 1 2 3 30 30 H 1.09004 * 109.47049 * 240.00212 * 2 1 3 31 31 H 1.09001 * 109.47085 * 120.00499 * 2 1 3 32 32 H 0.96998 * 119.99867 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00381 * 30.97485 * 13 3 2 34 34 H 1.08999 * 110.30813 * 334.35584 * 16 14 13 35 35 H 1.09003 * 110.30456 * 96.40696 * 16 14 13 36 36 H 1.07999 * 119.89485 * 359.96876 * 18 17 16 37 37 H 1.07995 * 120.03414 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.89624 * 180.02562 * 24 20 19 39 39 H 1.09004 * 110.29694 * 223.87872 * 26 25 17 40 40 H 1.08999 * 110.30232 * 101.72925 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8370 5 6 3.5409 1.4446 0.1353 6 1 4.1521 1.8871 -0.6374 7 6 4.1338 0.8816 1.2455 8 7 5.4436 0.8840 1.3638 9 14 3.0763 0.1232 2.5855 10 1 2.8512 -1.3135 2.2848 11 1 3.7670 0.2527 3.8938 12 1 1.7702 0.8274 2.6435 13 7 1.6609 2.0959 -1.2599 14 6 1.5793 3.5532 -1.0934 15 1 2.3465 3.9063 -0.4045 16 6 0.1742 3.9724 -0.6116 17 6 -0.0979 5.2981 -1.2895 18 6 -1.0331 6.2782 -1.0016 19 6 -1.0988 7.4236 -1.7704 20 6 -0.2277 7.5939 -2.8304 21 7 -0.2958 8.8210 -3.6555 22 8 0.4722 8.9705 -4.5889 23 8 -1.1198 9.6810 -3.4010 24 6 0.7060 6.6180 -3.1188 25 6 0.7726 5.4681 -2.3497 26 6 1.6887 4.2680 -2.4570 27 1 -0.3633 -1.0273 0.0262 28 1 -0.3633 0.5363 0.8766 29 1 -0.3633 0.4909 -0.9028 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8608 0.4883 2.1450 33 1 0.7926 1.7231 -1.6137 34 1 -0.5664 3.2329 -0.9162 35 1 0.1657 4.0911 0.4719 36 1 -1.7139 6.1460 -0.1737 37 1 -1.8295 8.1858 -1.5435 38 1 1.3864 6.7519 -3.9467 39 1 2.7150 4.5902 -2.6336 40 1 1.3555 3.6082 -3.2581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254579402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:00 Heat of formation + Delta-G solvation = 5.627515 kcal Electronic energy + Delta-G solvation = -22664.741419 eV Core-core repulsion = 19253.715053 eV Total energy + Delta-G solvation = -3411.026366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.29583 -41.45722 -38.73609 -37.71380 -36.47379 -34.19578 -33.03040 -32.62164 -30.03267 -28.99404 -28.38439 -26.42314 -24.42373 -23.48968 -22.47428 -21.79649 -21.68287 -19.84739 -19.71172 -18.77792 -18.64859 -17.22245 -17.17046 -16.82845 -16.13763 -15.81765 -15.34846 -15.22974 -14.75834 -14.58360 -14.12483 -13.96995 -13.82395 -13.60451 -13.30608 -13.17901 -12.87494 -12.75799 -12.47605 -12.35578 -12.34365 -12.33740 -12.24846 -12.17824 -12.00358 -11.64015 -11.24180 -11.17703 -10.66296 -10.36230 -10.00959 -9.04614 -8.25117 -6.27016 -1.26150 -0.05300 0.26668 0.33393 1.31218 1.35218 1.45631 2.22534 2.33189 3.01534 3.08291 3.23899 3.52189 3.57434 3.71748 3.86943 4.00555 4.20415 4.24132 4.31934 4.39688 4.45322 4.50132 4.62355 4.66921 4.73597 4.76107 4.81508 4.90173 5.04597 5.08493 5.11432 5.15356 5.18159 5.28276 5.28745 5.46958 5.50225 5.75352 6.09372 6.46294 6.50770 6.81500 6.97550 7.37996 8.92245 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.003422 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.277403 B = 8181.267596 C = 8497.340353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.199 3.801 4 H 0.005 0.995 5 C -0.499 4.499 6 H 0.032 0.968 7 C 0.006 3.994 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.240 1.240 13 N -0.671 5.671 14 C 0.095 3.905 15 H 0.067 0.933 16 C -0.114 4.114 17 C -0.031 4.031 18 C -0.097 4.097 19 C -0.051 4.051 20 C -0.064 4.064 21 N 0.034 4.966 22 O -0.196 6.196 23 O -0.166 6.166 24 C -0.050 4.050 25 C -0.093 4.093 26 C -0.068 4.068 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.341 0.659 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.075 0.925 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.083 7.460 -3.868 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.089 3.911 4 H 0.023 0.977 5 C -0.538 4.538 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.595 5.595 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.234 1.234 12 H -0.164 1.164 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.086 0.914 16 C -0.152 4.152 17 C -0.032 4.032 18 C -0.115 4.115 19 C -0.070 4.070 20 C -0.147 4.147 21 N 0.548 4.452 22 O -0.405 6.405 23 O -0.383 6.383 24 C -0.069 4.069 25 C -0.095 4.095 26 C -0.105 4.105 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.196 0.804 37 H 0.191 0.809 38 H 0.169 0.831 39 H 0.094 0.906 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.236 6.820 -3.663 18.895 hybrid contribution -0.091 0.102 0.789 0.801 sum -17.327 6.922 -2.873 18.879 Atomic orbital electron populations 1.21857 0.94105 1.02519 1.02206 1.22029 0.96557 0.98280 1.00796 1.19367 0.93204 0.91033 0.87454 0.97746 1.21367 0.92031 1.36057 1.04358 0.94941 1.25839 0.95825 0.96817 1.00597 1.70063 1.11190 1.47744 1.30533 0.85889 0.79754 0.79537 0.77406 1.19515 1.23366 1.16354 1.60256 1.37569 1.02238 1.30240 1.22110 0.95219 0.88668 0.95575 0.91444 1.22058 0.98495 0.93180 1.01490 1.21223 0.92638 0.95671 0.93688 1.20986 0.99017 0.90858 1.00685 1.21211 0.96278 0.98947 0.90542 1.21039 1.06454 0.87785 0.99425 1.43860 0.98636 1.02449 1.00215 1.94540 1.38608 1.85178 1.22148 1.94490 1.31839 1.37146 1.74860 1.20444 0.96029 0.90728 0.99664 1.20604 0.98505 0.94823 0.95534 1.21051 0.98345 0.92304 0.98836 0.91666 0.92809 0.90855 0.92072 0.94469 0.92841 0.83734 0.87149 0.89174 0.80402 0.80948 0.83057 0.90646 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.72 71.98 0.70 -3.07 16 2 C -0.14 -5.02 5.02 30.59 0.15 -4.87 16 3 C 0.20 8.02 1.50 44.17 0.07 8.08 16 4 H 0.01 0.20 6.83 -2.39 -0.02 0.18 16 5 C -0.50 -26.92 9.12 25.60 0.23 -26.69 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.01 0.31 5.45 84.65 0.46 0.77 16 8 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 9 Si 0.95 42.57 24.42 68.60 1.68 44.25 16 10 H -0.27 -11.59 6.82 99.48 0.68 -10.91 16 11 H -0.31 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.24 -9.57 6.53 99.48 0.65 -8.92 16 13 N -0.67 -22.11 6.12 -468.65 -2.87 -24.97 16 14 C 0.10 2.74 3.14 45.83 0.14 2.89 16 15 H 0.07 2.43 7.74 -2.39 -0.02 2.41 16 16 C -0.11 -2.31 6.34 30.51 0.19 -2.12 16 17 C -0.03 -0.59 6.14 -19.60 -0.12 -0.71 16 18 C -0.10 -1.41 10.04 22.30 0.22 -1.18 16 19 C -0.05 -0.85 9.55 22.24 0.21 -0.63 16 20 C -0.06 -1.42 6.85 36.34 0.25 -1.17 16 21 N 0.03 0.90 4.45 -46.53 -0.21 0.69 16 22 O -0.20 -5.69 18.45 18.89 0.35 -5.34 16 23 O -0.17 -4.40 18.45 18.88 0.35 -4.05 16 24 C -0.05 -1.09 9.55 22.30 0.21 -0.88 16 25 C -0.09 -2.03 6.14 -19.59 -0.12 -2.15 16 26 C -0.07 -1.67 6.49 30.52 0.20 -1.47 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.49 6.50 -2.39 -0.02 1.47 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 31 H 0.04 1.48 3.23 -2.39 -0.01 1.47 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.34 8.98 5.96 -89.70 -0.53 8.44 16 34 H 0.11 1.83 7.62 -2.39 -0.02 1.81 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.17 2.15 7.62 -2.91 -0.02 2.13 16 38 H 0.15 3.21 7.60 -2.91 -0.02 3.19 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.10 2.31 8.08 -2.39 -0.02 2.29 16 Total: -1.00 -67.10 327.67 2.85 -64.25 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.45 Total: 16.80 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 2.81 Total: -33.19 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.77 Total: -82.71 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.70 Total: -9.39 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.68 Total: 44.25 kcal Total: -67.10 2.85 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -67.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds