Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47341 * 2 1 4 4 H 1.09004 * 109.47037 * 179.81523 * 3 2 1 5 5 C 1.50698 * 109.46699 * 299.81598 * 3 2 1 6 6 H 1.08000 * 119.99808 * 120.00475 * 5 3 2 7 7 C 1.37880 * 120.00255 * 299.99279 * 5 3 2 8 8 N 1.31515 * 119.99529 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47232 * 90.00673 * 9 7 5 11 11 H 1.48510 * 109.46873 * 210.00243 * 9 7 5 12 12 H 1.48494 * 109.47343 * 330.00149 * 9 7 5 13 13 N 1.46900 * 109.47116 * 59.81435 * 3 2 1 14 14 C 1.46903 * 110.99731 * 85.74827 * 13 3 2 15 15 H 1.08998 * 110.73325 * 320.23830 * 14 13 3 16 16 C 1.54343 * 110.81989 * 83.65100 * 14 13 3 17 17 C 1.51364 * 105.17151 * 144.57298 * 16 14 13 18 18 C 1.38492 * 130.39232 * 162.77873 * 17 16 14 19 19 C 1.38108 * 120.22074 * 179.72094 * 18 17 16 20 20 C 1.38258 * 119.92802 * 0.55498 * 19 18 17 21 21 N 1.48020 * 120.03106 * 179.74516 * 20 19 18 22 22 O 1.21800 * 119.99876 * 179.72317 * 21 20 19 23 23 O 1.21793 * 119.99614 * 359.45265 * 21 20 19 24 24 C 1.38103 * 119.93726 * 359.47354 * 20 19 18 25 25 C 1.38223 * 109.76111 * 342.80143 * 17 16 14 26 26 C 1.51374 * 109.75441 * 0.02562 * 25 17 16 27 27 H 1.08997 * 109.47086 * 295.63043 * 1 2 3 28 28 H 1.09001 * 109.46998 * 55.63021 * 1 2 3 29 29 H 1.08998 * 109.47298 * 175.63322 * 1 2 3 30 30 H 1.09011 * 109.47188 * 240.00028 * 2 1 3 31 31 H 1.09005 * 109.47433 * 120.00103 * 2 1 3 32 32 H 0.96999 * 119.99668 * 179.97438 * 8 7 5 33 33 H 1.00893 * 111.00338 * 209.70771 * 13 3 2 34 34 H 1.08994 * 110.30663 * 25.64314 * 16 14 13 35 35 H 1.09007 * 110.38391 * 263.53746 * 16 14 13 36 36 H 1.08003 * 119.89265 * 0.04613 * 18 17 16 37 37 H 1.07992 * 120.03798 * 180.29773 * 19 18 17 38 38 H 1.07992 * 119.89477 * 180.27551 * 24 20 19 39 39 H 1.08998 * 110.30443 * 136.10525 * 26 25 17 40 40 H 1.08997 * 110.30171 * 258.26287 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 0.0033 5 6 1.5414 2.1515 -1.2328 6 1 0.9203 3.0298 -1.1365 7 6 1.8783 1.6792 -2.4835 8 7 2.6345 0.6095 -2.6007 9 14 1.2608 2.5585 -4.0115 10 1 2.2406 3.5994 -4.4136 11 1 1.0990 1.5783 -5.1154 12 1 -0.0480 3.1967 -3.7205 13 7 1.5467 2.1363 1.1972 14 6 2.4365 1.9061 2.3432 15 1 2.7878 0.8744 2.3578 16 6 3.6253 2.8903 2.3211 17 6 3.9045 3.2068 3.7746 18 6 5.0228 3.7629 4.3733 19 6 5.0511 3.9673 5.7388 20 6 3.9643 3.6054 6.5131 21 7 3.9944 3.8183 7.9776 22 8 3.0347 3.5039 8.6585 23 8 4.9808 4.3033 8.5023 24 6 2.8485 3.0503 5.9182 25 6 2.8161 2.8499 4.5482 26 6 1.7311 2.2684 3.6672 27 1 -0.3633 0.4445 0.9265 28 1 -0.3633 0.5802 -0.8483 29 1 -0.3634 -1.0247 -0.0782 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.8713 0.2770 -3.4806 33 1 1.4313 3.1231 1.0215 34 1 3.3550 3.7979 1.7815 35 1 4.4964 2.4232 1.8616 36 1 5.8736 4.0424 3.7695 37 1 5.9227 4.4055 6.2019 38 1 1.9983 2.7720 6.5231 39 1 1.3083 1.3754 4.1275 40 1 0.9511 3.0087 3.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254579403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = 12.783978 kcal Electronic energy + Delta-G solvation = -22554.826596 eV Core-core repulsion = 19144.110558 eV Total energy + Delta-G solvation = -3410.716038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.28388 -40.47474 -37.23135 -36.66329 -34.96978 -32.23769 -32.08847 -30.72366 -28.66455 -27.87809 -26.10355 -25.18894 -23.33671 -22.64331 -21.49281 -20.83865 -19.09064 -18.87530 -18.70142 -17.62863 -16.68998 -16.02661 -15.82335 -15.30165 -14.69837 -14.46591 -14.02228 -13.70194 -13.43545 -13.09098 -12.85361 -12.72865 -12.26868 -12.00139 -11.94543 -11.70050 -11.39029 -11.32384 -11.25350 -11.24185 -11.10530 -10.99899 -10.79301 -10.47816 -10.20528 -9.83009 -9.52058 -9.49821 -9.08530 -8.91977 -8.59823 -7.47577 -6.14176 -4.20367 -0.26701 0.78259 1.24655 1.29575 3.09948 3.20501 3.28859 3.31421 3.98320 4.22274 4.30907 4.35921 4.70100 4.73705 4.78377 5.06778 5.14852 5.19234 5.37048 5.38053 5.54379 5.65228 5.71018 5.74740 5.88226 5.97832 6.11168 6.21413 6.27904 6.39245 6.43403 6.56459 6.74239 7.11478 7.16313 7.35493 7.54143 7.61584 7.65534 7.70965 8.10610 8.21478 8.47762 8.87638 9.45270 10.91562 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003130 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.854311 B = 8943.696191 C = 9366.012447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.004 0.996 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.096 3.904 15 H 0.089 0.911 16 C -0.123 4.123 17 C -0.030 4.030 18 C -0.111 4.111 19 C -0.058 4.058 20 C -0.053 4.053 21 N 0.034 4.966 22 O -0.166 6.166 23 O -0.168 6.168 24 C -0.046 4.046 25 C -0.090 4.090 26 C -0.074 4.074 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.014 0.986 30 H 0.087 0.913 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.334 0.666 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 4.345 12.366 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.107 0.893 16 C -0.162 4.162 17 C -0.031 4.031 18 C -0.129 4.129 19 C -0.077 4.077 20 C -0.136 4.136 21 N 0.552 4.448 22 O -0.381 6.381 23 O -0.383 6.383 24 C -0.065 4.065 25 C -0.091 4.091 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.101 0.899 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.642 3.607 11.664 12.491 hybrid contribution 0.621 1.071 -0.646 1.396 sum 3.263 4.678 11.017 12.406 Atomic orbital electron populations 1.21452 0.97430 0.97555 1.01345 1.21469 0.95135 0.98197 0.99518 1.19148 0.93111 0.91445 0.85337 0.97871 1.21153 1.31956 1.12110 0.90287 0.92267 1.24874 0.94950 0.94934 0.98964 1.69872 1.36460 1.22546 1.23677 0.86582 0.79275 0.79364 0.82717 1.20798 1.21194 1.19821 1.60717 1.47459 1.16093 1.06018 1.22246 0.89530 0.98298 0.91530 0.89278 1.22234 1.02092 1.01609 0.90279 1.21293 0.92490 0.91499 0.97798 1.20713 0.98917 1.00292 0.93012 1.20890 0.96967 0.96378 0.93486 1.20865 1.00007 1.13169 0.79531 1.43607 0.99851 0.97747 1.03633 1.94532 1.27377 1.53793 1.62420 1.94517 1.23939 1.44846 1.74987 1.20408 0.96559 0.94944 0.94595 1.20777 0.97725 0.98906 0.91677 1.21208 0.95471 1.01112 0.93392 0.93962 0.92454 0.96718 0.89438 0.97190 0.92845 0.84721 0.88698 0.89633 0.83801 0.83091 0.83266 0.89876 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.52 37.15 0.35 -2.15 16 2 C -0.10 -2.32 5.57 -26.73 -0.15 -2.47 16 3 C 0.22 4.76 2.17 -68.86 -0.15 4.61 16 4 H 0.00 0.09 7.64 -51.93 -0.40 -0.31 16 5 C -0.52 -12.66 7.26 -34.44 -0.25 -12.91 16 6 H 0.06 1.44 7.61 -52.49 -0.40 1.04 16 7 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -23.60 11.32 55.43 0.63 -22.97 16 9 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.67 -11.85 5.42 -99.48 -0.54 -12.38 16 14 C 0.10 1.38 3.16 -66.31 -0.21 1.17 16 15 H 0.09 1.39 7.30 -51.93 -0.38 1.01 16 16 C -0.12 -1.57 6.15 -26.85 -0.17 -1.74 16 17 C -0.03 -0.34 6.14 -104.21 -0.64 -0.98 16 18 C -0.11 -1.10 10.04 -39.54 -0.40 -1.49 16 19 C -0.06 -0.60 9.56 -39.62 -0.38 -0.98 16 20 C -0.05 -0.63 6.85 -79.99 -0.55 -1.18 16 21 N 0.03 0.46 4.45 33.94 0.15 0.61 16 22 O -0.17 -2.38 18.45 -29.46 -0.54 -2.92 16 23 O -0.17 -2.36 18.45 -29.46 -0.54 -2.90 16 24 C -0.05 -0.52 9.55 -39.54 -0.38 -0.90 16 25 C -0.09 -1.03 6.14 -104.20 -0.64 -1.67 16 26 C -0.07 -0.89 6.49 -26.85 -0.17 -1.06 16 27 H 0.04 0.82 7.74 -51.93 -0.40 0.42 16 28 H 0.06 1.29 7.07 -51.93 -0.37 0.93 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.20 6.06 -51.92 -0.31 1.89 16 31 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.33 5.75 7.74 -39.30 -0.30 5.45 16 34 H 0.09 1.23 7.68 -51.93 -0.40 0.83 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.15 1.30 7.62 -52.49 -0.40 0.90 16 38 H 0.15 1.53 7.60 -52.49 -0.40 1.13 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -26.46 333.27 -10.06 -36.52 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.39 Total: 4.26 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.82 Total: -20.19 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.24 Total: -34.74 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -1.09 Total: -5.82 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.46 -10.06 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.300 kcal (2) G-P(sol) polarization free energy of solvation -26.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds