Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47341 * 2 1 4 4 H 1.09004 * 109.47037 * 179.81523 * 3 2 1 5 5 C 1.50698 * 109.46699 * 299.81598 * 3 2 1 6 6 H 1.08000 * 119.99808 * 120.00475 * 5 3 2 7 7 C 1.37880 * 120.00255 * 299.99279 * 5 3 2 8 8 N 1.31515 * 119.99529 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47232 * 90.00673 * 9 7 5 11 11 H 1.48510 * 109.46873 * 210.00243 * 9 7 5 12 12 H 1.48494 * 109.47343 * 330.00149 * 9 7 5 13 13 N 1.46900 * 109.47116 * 59.81435 * 3 2 1 14 14 C 1.46903 * 110.99731 * 85.74827 * 13 3 2 15 15 H 1.08998 * 110.73325 * 320.23830 * 14 13 3 16 16 C 1.54343 * 110.81989 * 83.65100 * 14 13 3 17 17 C 1.51364 * 105.17151 * 144.57298 * 16 14 13 18 18 C 1.38492 * 130.39232 * 162.77873 * 17 16 14 19 19 C 1.38108 * 120.22074 * 179.72094 * 18 17 16 20 20 C 1.38258 * 119.92802 * 0.55498 * 19 18 17 21 21 N 1.48020 * 120.03106 * 179.74516 * 20 19 18 22 22 O 1.21800 * 119.99876 * 179.72317 * 21 20 19 23 23 O 1.21793 * 119.99614 * 359.45265 * 21 20 19 24 24 C 1.38103 * 119.93726 * 359.47354 * 20 19 18 25 25 C 1.38223 * 109.76111 * 342.80143 * 17 16 14 26 26 C 1.51374 * 109.75441 * 0.02562 * 25 17 16 27 27 H 1.08997 * 109.47086 * 295.63043 * 1 2 3 28 28 H 1.09001 * 109.46998 * 55.63021 * 1 2 3 29 29 H 1.08998 * 109.47298 * 175.63322 * 1 2 3 30 30 H 1.09011 * 109.47188 * 240.00028 * 2 1 3 31 31 H 1.09005 * 109.47433 * 120.00103 * 2 1 3 32 32 H 0.96999 * 119.99668 * 179.97438 * 8 7 5 33 33 H 1.00893 * 111.00338 * 209.70771 * 13 3 2 34 34 H 1.08994 * 110.30663 * 25.64314 * 16 14 13 35 35 H 1.09007 * 110.38391 * 263.53746 * 16 14 13 36 36 H 1.08003 * 119.89265 * 0.04613 * 18 17 16 37 37 H 1.07992 * 120.03798 * 180.29773 * 19 18 17 38 38 H 1.07992 * 119.89477 * 180.27551 * 24 20 19 39 39 H 1.08998 * 110.30443 * 136.10525 * 26 25 17 40 40 H 1.08997 * 110.30171 * 258.26287 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 0.0033 5 6 1.5414 2.1515 -1.2328 6 1 0.9203 3.0298 -1.1365 7 6 1.8783 1.6792 -2.4835 8 7 2.6345 0.6095 -2.6007 9 14 1.2608 2.5585 -4.0115 10 1 2.2406 3.5994 -4.4136 11 1 1.0990 1.5783 -5.1154 12 1 -0.0480 3.1967 -3.7205 13 7 1.5467 2.1363 1.1972 14 6 2.4365 1.9061 2.3432 15 1 2.7878 0.8744 2.3578 16 6 3.6253 2.8903 2.3211 17 6 3.9045 3.2068 3.7746 18 6 5.0228 3.7629 4.3733 19 6 5.0511 3.9673 5.7388 20 6 3.9643 3.6054 6.5131 21 7 3.9944 3.8183 7.9776 22 8 3.0347 3.5039 8.6585 23 8 4.9808 4.3033 8.5023 24 6 2.8485 3.0503 5.9182 25 6 2.8161 2.8499 4.5482 26 6 1.7311 2.2684 3.6672 27 1 -0.3633 0.4445 0.9265 28 1 -0.3633 0.5802 -0.8483 29 1 -0.3634 -1.0247 -0.0782 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.8713 0.2770 -3.4806 33 1 1.4313 3.1231 1.0215 34 1 3.3550 3.7979 1.7815 35 1 4.4964 2.4232 1.8616 36 1 5.8736 4.0424 3.7695 37 1 5.9227 4.4055 6.2019 38 1 1.9983 2.7720 6.5231 39 1 1.3083 1.3754 4.1275 40 1 0.9511 3.0087 3.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254579403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = 0.717140 kcal Electronic energy + Delta-G solvation = -22555.349854 eV Core-core repulsion = 19144.110558 eV Total energy + Delta-G solvation = -3411.239296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.29380 -41.43970 -38.53292 -37.71041 -36.39509 -33.87025 -33.00213 -32.25724 -29.90851 -28.92772 -27.68452 -26.33939 -25.07452 -23.61665 -22.45612 -22.04571 -20.71671 -19.87930 -19.70688 -18.64541 -18.35619 -17.15384 -17.01904 -16.59910 -16.10173 -15.52063 -15.28920 -15.08178 -14.71398 -14.33415 -14.10849 -13.86444 -13.76300 -13.47475 -13.20896 -12.81799 -12.77979 -12.64446 -12.45274 -12.38185 -12.33271 -12.33136 -12.18779 -12.13994 -11.87953 -11.53087 -11.26458 -10.75791 -10.51261 -10.37109 -10.00593 -8.97581 -8.07899 -6.18779 -1.25813 -0.05446 0.26782 0.33184 1.42219 1.46126 1.53703 2.22313 2.43824 3.05062 3.20999 3.28217 3.52241 3.68115 3.74904 3.87744 4.02507 4.21261 4.25180 4.47956 4.61385 4.69774 4.70484 4.73273 4.77660 4.83018 4.88429 4.97933 5.04770 5.09233 5.16978 5.29230 5.36370 5.45697 5.48855 5.61070 5.74814 5.85984 5.93784 6.32492 6.47010 6.52413 6.82934 7.07202 7.50287 8.96757 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003130 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.854311 B = 8943.696191 C = 9366.012447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.024 1.024 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.092 3.908 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.033 4.033 18 C -0.102 4.102 19 C -0.051 4.051 20 C -0.064 4.064 21 N 0.034 4.966 22 O -0.187 6.187 23 O -0.173 6.173 24 C -0.045 4.045 25 C -0.092 4.092 26 C -0.064 4.064 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.259 0.741 33 H 0.337 0.663 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.091 0.909 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 5.294 13.054 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C 0.117 3.883 4 H -0.007 1.007 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.299 5.299 14 C -0.020 4.020 15 H 0.094 0.906 16 C -0.155 4.155 17 C -0.034 4.034 18 C -0.121 4.121 19 C -0.070 4.070 20 C -0.147 4.147 21 N 0.549 4.451 22 O -0.399 6.399 23 O -0.388 6.388 24 C -0.064 4.064 25 C -0.093 4.093 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.176 0.824 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.626 4.565 12.389 13.462 hybrid contribution 0.668 0.779 -0.841 1.327 sum 3.294 5.344 11.548 13.144 Atomic orbital electron populations 1.21322 0.96143 0.98187 1.00989 1.21364 0.96179 0.98108 0.98479 1.18862 0.91311 0.91663 0.86419 1.00658 1.21470 1.31197 1.11931 0.91319 0.92316 1.25542 0.95349 0.95577 1.01526 1.70004 1.37771 1.23826 1.23888 0.85720 0.78900 0.78274 0.79705 1.20445 1.21604 1.19339 1.60589 1.48197 1.15958 1.05136 1.22228 0.90202 0.98112 0.91424 0.90632 1.22032 1.01061 1.00976 0.91413 1.21228 0.93274 0.92141 0.96769 1.20955 0.99046 0.99076 0.92979 1.21158 0.96979 0.95442 0.93427 1.21035 1.00980 1.14159 0.78541 1.43834 0.99566 0.97384 1.04309 1.94528 1.27627 1.54611 1.63087 1.94500 1.23943 1.44876 1.75499 1.20462 0.96808 0.94670 0.94501 1.20647 0.97617 0.99339 0.91671 1.21051 0.95463 1.01702 0.91898 0.92581 0.94635 0.95320 0.92635 0.96032 0.93164 0.84388 0.88787 0.90261 0.81189 0.81156 0.82411 0.89027 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 9.52 71.98 0.69 -3.75 16 2 C -0.10 -4.57 5.57 30.59 0.17 -4.40 16 3 C 0.23 9.95 2.17 44.17 0.10 10.05 16 4 H -0.02 -1.19 7.64 -2.38 -0.02 -1.21 16 5 C -0.52 -25.53 7.26 25.60 0.19 -25.35 16 6 H 0.06 2.83 7.61 -2.91 -0.02 2.81 16 7 C 0.02 0.99 5.30 84.66 0.45 1.44 16 8 N -0.92 -49.54 11.32 21.45 0.24 -49.29 16 9 Si 0.95 41.02 29.54 68.60 2.03 43.04 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 N -0.67 -23.04 5.42 -468.64 -2.54 -25.57 16 14 C 0.09 2.55 3.16 45.82 0.14 2.69 16 15 H 0.08 2.32 7.30 -2.39 -0.02 2.30 16 16 C -0.12 -2.83 6.15 30.51 0.19 -2.64 16 17 C -0.03 -0.69 6.14 -19.60 -0.12 -0.81 16 18 C -0.10 -1.72 10.04 22.30 0.22 -1.50 16 19 C -0.05 -0.91 9.56 22.24 0.21 -0.70 16 20 C -0.06 -1.41 6.85 36.35 0.25 -1.16 16 21 N 0.03 0.89 4.45 -46.53 -0.21 0.68 16 22 O -0.19 -5.21 18.45 18.89 0.35 -4.86 16 23 O -0.17 -4.59 18.45 18.89 0.35 -4.25 16 24 C -0.05 -0.94 9.55 22.30 0.21 -0.73 16 25 C -0.09 -1.92 6.14 -19.59 -0.12 -2.04 16 26 C -0.06 -1.40 6.49 30.52 0.20 -1.20 16 27 H 0.06 2.10 7.74 -2.39 -0.02 2.08 16 28 H 0.03 1.57 7.07 -2.39 -0.02 1.56 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 2.85 6.06 -2.38 -0.01 2.83 16 31 H 0.02 0.88 7.49 -2.38 -0.02 0.86 16 32 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 33 H 0.34 11.28 7.74 -89.70 -0.69 10.59 16 34 H 0.09 2.32 7.68 -2.39 -0.02 2.30 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.17 2.37 7.62 -2.91 -0.02 2.34 16 38 H 0.16 2.96 7.60 -2.91 -0.02 2.93 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 2.11 8.08 -2.39 -0.02 2.10 16 Total: -1.00 -56.28 333.27 3.36 -52.91 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.37 Total: 17.42 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 2.78 Total: -30.09 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -2.50 Total: -74.18 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.70 Total: -9.11 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -56.28 3.36 -52.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254579403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.631 kcal (2) G-P(sol) polarization free energy of solvation -56.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds