Wall clock time and date at job start Tue Mar 31 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46775 * 177.76400 * 3 2 1 5 5 C 1.50696 * 109.47669 * 57.75716 * 3 2 1 6 6 H 1.07995 * 120.00055 * 240.00653 * 5 3 2 7 7 C 1.37877 * 119.99585 * 60.00154 * 5 3 2 8 8 N 1.31510 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99772 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47153 * 60.00064 * 9 7 5 11 11 H 1.48506 * 109.47122 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47255 * 299.99997 * 9 7 5 13 13 N 1.46901 * 109.46773 * 297.75548 * 3 2 1 14 14 C 1.46893 * 111.00436 * 273.70530 * 13 3 2 15 15 C 1.50702 * 109.47602 * 175.80530 * 14 13 3 16 16 C 1.34854 * 125.89086 * 95.02184 * 15 14 13 17 17 C 1.40895 * 107.41601 * 179.97438 * 16 15 14 18 18 C 1.34848 * 107.41808 * 0.02562 * 17 16 15 19 19 C 1.50695 * 125.89243 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46971 * 5.02084 * 19 18 17 21 21 F 1.39899 * 109.47549 * 125.02357 * 19 18 17 22 22 F 1.39908 * 109.47352 * 245.02724 * 19 18 17 23 23 N 1.36341 * 125.89120 * 275.31558 * 15 14 13 24 24 C 1.46505 * 125.63613 * 0.02562 * 23 15 14 25 25 H 1.09001 * 109.47015 * 54.17847 * 1 2 3 26 26 H 1.09004 * 109.47016 * 174.17980 * 1 2 3 27 27 H 1.09000 * 109.46994 * 294.17568 * 1 2 3 28 28 H 1.08998 * 109.47233 * 239.99471 * 2 1 3 29 29 H 1.09001 * 109.46486 * 119.99677 * 2 1 3 30 30 H 0.97002 * 120.00115 * 180.02562 * 8 7 5 31 31 H 1.00909 * 110.99837 * 149.74945 * 13 3 2 32 32 H 1.08998 * 109.47266 * 55.80806 * 14 13 3 33 33 H 1.09001 * 109.47528 * 295.80344 * 14 13 3 34 34 H 1.07995 * 126.29099 * 359.95879 * 16 15 14 35 35 H 1.07995 * 126.28697 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47076 * 270.21957 * 24 23 15 37 37 H 1.08996 * 109.47343 * 30.22181 * 24 23 15 38 38 H 1.08995 * 109.47191 * 150.22433 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.4928 2.1688 1.2016 6 1 0.8762 3.0453 1.0682 7 6 1.7795 1.7143 2.4714 8 7 2.5299 0.6466 2.6338 9 14 1.1007 2.6142 3.9609 10 1 -0.3834 2.6132 3.9060 11 1 1.5501 1.9299 5.2000 12 1 1.5951 4.0145 3.9611 13 7 1.5950 2.1191 -1.2257 14 6 2.5365 1.8837 -2.3284 15 6 1.9967 2.5046 -3.5910 16 6 2.3027 3.7304 -4.0626 17 6 1.5838 3.9129 -5.2606 18 6 0.8655 2.7920 -5.4750 19 6 -0.0535 2.5414 -6.6427 20 9 0.0342 3.6091 -7.5426 21 9 0.3219 1.3573 -7.2861 22 9 -1.3700 2.4255 -6.1836 23 7 1.1106 1.9261 -4.4507 24 6 0.5217 0.5931 -4.3004 25 1 -0.3633 0.6015 -0.8333 26 1 -0.3633 -1.0224 -0.1042 27 1 -0.3633 0.4209 0.9375 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.7312 0.3266 3.5271 31 1 1.4644 3.1069 -1.0663 32 1 2.6623 0.8111 -2.4761 33 1 3.4997 2.3326 -2.0859 34 1 2.9750 4.4415 -3.6059 35 1 1.6043 4.7894 -5.8911 36 1 1.1581 -0.1428 -4.7920 37 1 0.4371 0.3505 -3.2412 38 1 -0.4682 0.5796 -4.7564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:48 Heat of formation + Delta-G solvation = -108.151117 kcal Electronic energy + Delta-G solvation = -23716.465231 eV Core-core repulsion = 19758.648313 eV Total energy + Delta-G solvation = -3957.816918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.23998 -47.77935 -47.72014 -41.33231 -36.40213 -33.06743 -32.91444 -31.19896 -29.87597 -27.16300 -26.40596 -25.36935 -23.45628 -23.09199 -20.83591 -19.58558 -19.07537 -18.60281 -18.28182 -18.03986 -16.64525 -15.44037 -15.31051 -14.81674 -14.55369 -14.52553 -14.18871 -14.16509 -13.94385 -13.88896 -13.71610 -13.53001 -13.39452 -13.15208 -12.55555 -12.40820 -12.21426 -12.02942 -11.91706 -11.80551 -11.25290 -10.94190 -10.79355 -10.47532 -10.16345 -9.85510 -9.49312 -8.90071 -8.67046 -8.54387 -8.24261 -7.40455 -6.08431 -4.14036 1.86226 2.38685 2.87933 2.92744 3.27443 3.32486 3.35340 3.69541 4.06929 4.32973 4.35647 4.83691 4.96372 5.21478 5.23444 5.28678 5.48054 5.55161 5.63547 5.82494 6.02576 6.14283 6.21607 6.40709 6.59085 6.74017 6.85636 7.08153 7.09487 7.17314 7.21054 7.39284 7.63245 7.70990 7.74796 8.15018 8.26280 8.54121 8.93588 9.51176 10.97544 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003698 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.008619 B = 7570.621199 C = 7783.724517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.118 3.882 15 C 0.088 3.912 16 C -0.208 4.208 17 C -0.123 4.123 18 C -0.108 4.108 19 C 0.543 3.457 20 F -0.169 7.169 21 F -0.181 7.181 22 F -0.178 7.178 23 N -0.410 5.410 24 C 0.061 3.939 25 H 0.044 0.956 26 H 0.013 0.987 27 H 0.053 0.947 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 1.788 -15.979 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.314 5.314 14 C -0.012 4.012 15 C -0.028 4.028 16 C -0.232 4.232 17 C -0.150 4.150 18 C -0.219 4.219 19 C 0.488 3.512 20 F -0.150 7.150 21 F -0.163 7.163 22 F -0.160 7.160 23 N -0.084 5.084 24 C -0.080 4.080 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.743 0.764 -16.005 16.256 hybrid contribution 0.159 0.899 0.877 1.266 sum -2.583 1.663 -15.128 15.437 Atomic orbital electron populations 1.21451 0.97478 0.97075 1.01686 1.21448 0.95067 0.98217 0.99334 1.19143 0.93516 0.91543 0.84849 0.97929 1.21111 1.31884 1.12080 0.90241 0.92285 1.24863 0.94992 0.94980 0.98848 1.69864 1.37313 1.23051 1.22501 0.86630 0.79468 0.79786 0.81952 1.20218 1.21337 1.20316 1.60727 1.46493 1.17057 1.07171 1.20496 0.94220 0.99664 0.86863 1.20855 0.94111 0.94113 0.93744 1.20747 1.07039 0.97071 0.98298 1.20690 0.98772 0.96628 0.98883 1.19768 1.10527 0.96272 0.95354 1.17344 0.78417 0.73806 0.81598 1.93178 1.96160 1.56438 1.69212 1.93206 1.91226 1.48372 1.83458 1.93227 1.38297 1.95701 1.88751 1.43562 1.33894 1.13729 1.17243 1.22257 0.98693 0.80951 1.06081 0.93648 0.96821 0.92790 0.97328 0.89499 0.92839 0.84499 0.90811 0.93191 0.83729 0.83740 0.90661 0.87378 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.45 37.16 0.35 -2.17 16 2 C -0.10 -2.30 5.58 -26.73 -0.15 -2.45 16 3 C 0.22 4.99 2.31 -68.87 -0.16 4.84 16 4 H 0.00 0.08 7.83 -51.93 -0.41 -0.33 16 5 C -0.51 -13.12 7.33 -34.44 -0.25 -13.38 16 6 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.16 11.34 55.43 0.63 -23.53 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.12 5.51 -109.23 -0.60 -13.72 16 14 C 0.12 1.92 5.36 -4.98 -0.03 1.90 16 15 C 0.09 1.33 6.44 -81.79 -0.53 0.80 16 16 C -0.21 -2.92 10.77 -39.78 -0.43 -3.34 16 17 C -0.12 -1.64 10.26 -39.78 -0.41 -2.05 16 18 C -0.11 -1.50 6.31 -81.79 -0.52 -2.02 16 19 C 0.54 6.89 3.01 36.00 0.11 7.00 16 20 F -0.17 -2.04 16.75 2.25 0.04 -2.00 16 21 F -0.18 -2.26 17.02 2.25 0.04 -2.22 16 22 F -0.18 -2.35 16.68 2.25 0.04 -2.31 16 23 N -0.41 -5.88 3.15 -115.29 -0.36 -6.25 16 24 C 0.06 0.76 10.35 59.85 0.62 1.38 16 25 H 0.04 0.92 7.50 -51.93 -0.39 0.53 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 28 H 0.01 0.17 7.44 -51.93 -0.39 -0.22 16 29 H 0.09 2.21 6.13 -51.93 -0.32 1.89 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.34 6.59 8.23 -39.29 -0.32 6.26 16 32 H 0.07 1.20 7.25 -51.93 -0.38 0.83 16 33 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.14 1.61 7.94 -52.49 -0.42 1.19 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.46 7.77 -51.93 -0.40 1.06 16 38 H 0.08 0.90 7.21 -51.93 -0.37 0.53 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -26.55 326.85 -6.80 -33.36 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.00 Total: 4.11 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.48 Total: -7.88 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.34 Total: -43.50 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.55 -6.80 -33.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.795 kcal (2) G-P(sol) polarization free energy of solvation -26.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds