Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46775 * 177.76400 * 3 2 1 5 5 C 1.50696 * 109.47669 * 57.75716 * 3 2 1 6 6 H 1.07995 * 120.00055 * 240.00653 * 5 3 2 7 7 C 1.37877 * 119.99585 * 60.00154 * 5 3 2 8 8 N 1.31510 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99772 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47153 * 60.00064 * 9 7 5 11 11 H 1.48506 * 109.47122 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47255 * 299.99997 * 9 7 5 13 13 N 1.46901 * 109.46773 * 297.75548 * 3 2 1 14 14 C 1.46893 * 111.00436 * 273.70530 * 13 3 2 15 15 C 1.50702 * 109.47602 * 175.80530 * 14 13 3 16 16 C 1.34854 * 125.89086 * 95.02184 * 15 14 13 17 17 C 1.40895 * 107.41601 * 179.97438 * 16 15 14 18 18 C 1.34848 * 107.41808 * 0.02562 * 17 16 15 19 19 C 1.50695 * 125.89243 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46971 * 5.02084 * 19 18 17 21 21 F 1.39899 * 109.47549 * 125.02357 * 19 18 17 22 22 F 1.39908 * 109.47352 * 245.02724 * 19 18 17 23 23 N 1.36341 * 125.89120 * 275.31558 * 15 14 13 24 24 C 1.46505 * 125.63613 * 0.02562 * 23 15 14 25 25 H 1.09001 * 109.47015 * 54.17847 * 1 2 3 26 26 H 1.09004 * 109.47016 * 174.17980 * 1 2 3 27 27 H 1.09000 * 109.46994 * 294.17568 * 1 2 3 28 28 H 1.08998 * 109.47233 * 239.99471 * 2 1 3 29 29 H 1.09001 * 109.46486 * 119.99677 * 2 1 3 30 30 H 0.97002 * 120.00115 * 180.02562 * 8 7 5 31 31 H 1.00909 * 110.99837 * 149.74945 * 13 3 2 32 32 H 1.08998 * 109.47266 * 55.80806 * 14 13 3 33 33 H 1.09001 * 109.47528 * 295.80344 * 14 13 3 34 34 H 1.07995 * 126.29099 * 359.95879 * 16 15 14 35 35 H 1.07995 * 126.28697 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47076 * 270.21957 * 24 23 15 37 37 H 1.08996 * 109.47343 * 30.22181 * 24 23 15 38 38 H 1.08995 * 109.47191 * 150.22433 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.4928 2.1688 1.2016 6 1 0.8762 3.0453 1.0682 7 6 1.7795 1.7143 2.4714 8 7 2.5299 0.6466 2.6338 9 14 1.1007 2.6142 3.9609 10 1 -0.3834 2.6132 3.9060 11 1 1.5501 1.9299 5.2000 12 1 1.5951 4.0145 3.9611 13 7 1.5950 2.1191 -1.2257 14 6 2.5365 1.8837 -2.3284 15 6 1.9967 2.5046 -3.5910 16 6 2.3027 3.7304 -4.0626 17 6 1.5838 3.9129 -5.2606 18 6 0.8655 2.7920 -5.4750 19 6 -0.0535 2.5414 -6.6427 20 9 0.0342 3.6091 -7.5426 21 9 0.3219 1.3573 -7.2861 22 9 -1.3700 2.4255 -6.1836 23 7 1.1106 1.9261 -4.4507 24 6 0.5217 0.5931 -4.3004 25 1 -0.3633 0.6015 -0.8333 26 1 -0.3633 -1.0224 -0.1042 27 1 -0.3633 0.4209 0.9375 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.7312 0.3266 3.5271 31 1 1.4644 3.1069 -1.0663 32 1 2.6623 0.8111 -2.4761 33 1 3.4997 2.3326 -2.0859 34 1 2.9750 4.4415 -3.6059 35 1 1.6043 4.7894 -5.8911 36 1 1.1581 -0.1428 -4.7920 37 1 0.4371 0.3505 -3.2412 38 1 -0.4682 0.5796 -4.7564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -121.663640 kcal Electronic energy + Delta-G solvation = -23717.051178 eV Core-core repulsion = 19758.648313 eV Total energy + Delta-G solvation = -3958.402865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.23140 -48.75488 -48.72258 -42.41486 -38.09807 -34.76743 -33.95011 -32.91976 -31.22476 -28.73255 -27.42591 -26.87519 -25.11124 -24.49370 -21.88691 -21.03395 -20.56019 -19.59858 -19.28740 -19.07242 -18.41011 -17.02896 -16.52592 -16.34580 -15.72188 -15.57369 -15.55000 -15.16858 -15.10774 -15.06304 -14.91540 -14.87518 -14.67047 -14.40804 -14.00365 -13.81658 -13.60814 -13.34039 -13.08098 -12.98539 -12.85761 -12.73741 -12.47059 -12.35678 -11.89815 -11.63440 -11.31003 -10.79824 -10.51935 -9.71890 -9.40275 -9.01729 -8.08084 -6.19173 0.77243 1.35676 1.44263 1.45626 1.52065 1.78830 1.90088 2.44549 2.68184 3.08050 3.21717 3.33125 3.64475 3.85901 3.94353 4.26789 4.32042 4.48640 4.60225 4.61388 4.68359 4.72388 4.82350 4.96085 5.06950 5.16611 5.30405 5.38515 5.57765 5.72621 5.79333 5.83895 5.90513 6.01684 6.10627 6.29992 6.47821 6.77439 7.02503 7.49475 8.96518 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003698 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.008619 B = 7570.621199 C = 7783.724517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.224 3.776 4 H -0.028 1.028 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.676 5.676 14 C 0.126 3.874 15 C 0.069 3.931 16 C -0.207 4.207 17 C -0.126 4.126 18 C -0.114 4.114 19 C 0.550 3.450 20 F -0.164 7.164 21 F -0.179 7.179 22 F -0.181 7.181 23 N -0.416 5.416 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.260 0.740 31 H 0.336 0.664 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 2.354 -17.145 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.116 3.884 4 H -0.011 1.011 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.307 5.307 14 C -0.004 4.004 15 C -0.047 4.047 16 C -0.232 4.232 17 C -0.152 4.152 18 C -0.226 4.226 19 C 0.495 3.505 20 F -0.145 7.145 21 F -0.160 7.160 22 F -0.162 7.162 23 N -0.090 5.090 24 C -0.082 4.082 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.413 1.332 -17.187 17.573 hybrid contribution 0.381 0.733 1.155 1.420 sum -3.032 2.066 -16.032 16.446 Atomic orbital electron populations 1.21304 0.96204 0.98384 1.00526 1.21311 0.96064 0.97592 0.98634 1.18912 0.91467 0.92175 0.85893 1.01066 1.21396 1.31440 1.11994 0.91326 0.92627 1.25528 0.95364 0.95649 1.01271 1.69992 1.38429 1.24216 1.22756 0.85755 0.78802 0.78846 0.79069 1.20001 1.21329 1.19813 1.60629 1.47179 1.16596 1.06274 1.20372 0.93682 0.99823 0.86522 1.20635 0.95482 0.94817 0.93746 1.21007 1.06893 0.96799 0.98465 1.20995 0.98211 0.97233 0.98808 1.20043 1.10625 0.96376 0.95519 1.17172 0.78044 0.73967 0.81339 1.93190 1.96113 1.56220 1.68959 1.93212 1.91191 1.48275 1.83361 1.93224 1.38457 1.95731 1.88822 1.43701 1.33719 1.14332 1.17202 1.22350 0.99586 0.80639 1.05586 0.92811 0.94667 0.95363 0.95590 0.92555 0.93068 0.84706 0.90861 0.93123 0.82511 0.81601 0.88988 0.88601 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 9.45 71.98 0.68 -3.74 16 2 C -0.10 -4.38 5.58 30.59 0.17 -4.21 16 3 C 0.22 10.40 2.31 44.17 0.10 10.50 16 4 H -0.03 -1.47 7.83 -2.39 -0.02 -1.49 16 5 C -0.52 -26.83 7.33 25.60 0.19 -26.64 16 6 H 0.06 2.83 7.60 -2.91 -0.02 2.81 16 7 C 0.02 1.13 5.30 84.66 0.45 1.57 16 8 N -0.91 -50.48 11.34 21.45 0.24 -50.23 16 9 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.68 -25.68 5.51 -499.49 -2.75 -28.43 16 14 C 0.13 4.02 5.36 85.56 0.46 4.48 16 15 C 0.07 1.99 6.44 41.08 0.26 2.26 16 16 C -0.21 -5.45 10.77 22.14 0.24 -5.21 16 17 C -0.13 -3.07 10.26 22.14 0.23 -2.85 16 18 C -0.11 -2.93 6.31 41.08 0.26 -2.67 16 19 C 0.55 12.75 3.01 71.23 0.21 12.97 16 20 F -0.16 -3.58 16.75 44.97 0.75 -2.82 16 21 F -0.18 -4.08 17.02 44.97 0.77 -3.31 16 22 F -0.18 -4.40 16.68 44.97 0.75 -3.65 16 23 N -0.42 -11.19 3.15 -518.68 -1.63 -12.82 16 24 C 0.06 1.36 10.35 127.77 1.32 2.68 16 25 H 0.05 2.11 7.50 -2.39 -0.02 2.09 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.03 1.28 7.38 -2.39 -0.02 1.26 16 28 H 0.03 1.05 7.44 -2.39 -0.02 1.03 16 29 H 0.06 2.91 6.13 -2.39 -0.01 2.89 16 30 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.34 12.96 8.23 -89.69 -0.74 12.22 16 32 H 0.07 2.33 7.25 -2.39 -0.02 2.32 16 33 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 34 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.17 3.22 7.94 -2.91 -0.02 3.19 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.45 7.77 -2.39 -0.02 2.43 16 38 H 0.09 1.85 7.21 -2.39 -0.02 1.83 16 Total: -1.00 -55.58 326.85 5.07 -50.50 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.35 Total: 17.41 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.57 Total: -10.86 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -4.14 Total: -91.49 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 2.27 Total: -9.78 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -55.58 5.07 -50.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.163 kcal (2) G-P(sol) polarization free energy of solvation -55.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds