Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47396 * 2 1 4 4 H 1.08997 * 109.47545 * 179.82750 * 3 2 1 5 5 C 1.50694 * 109.47225 * 299.83078 * 3 2 1 6 6 H 1.07999 * 120.00281 * 119.99541 * 5 3 2 7 7 C 1.37882 * 120.00055 * 299.99486 * 5 3 2 8 8 N 1.31516 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00342 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46932 * 90.00270 * 9 7 5 11 11 H 1.48495 * 109.47311 * 210.00056 * 9 7 5 12 12 H 1.48497 * 109.47343 * 330.00356 * 9 7 5 13 13 N 1.46910 * 109.46833 * 59.82637 * 3 2 1 14 14 C 1.46899 * 110.99545 * 85.93160 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.53615 * 14 13 3 16 16 C 1.34852 * 125.88937 * 95.02934 * 15 14 13 17 17 C 1.40888 * 107.41628 * 179.97438 * 16 15 14 18 18 C 1.34850 * 107.41898 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.89034 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.47022 * 4.97836 * 19 18 17 21 21 F 1.39899 * 109.46900 * 124.97590 * 19 18 17 22 22 F 1.39894 * 109.47069 * 244.97383 * 19 18 17 23 23 N 1.36343 * 125.89064 * 274.71863 * 15 14 13 24 24 C 1.46501 * 125.63701 * 359.97438 * 23 15 14 25 25 H 1.09000 * 109.47441 * 175.58667 * 1 2 3 26 26 H 1.09000 * 109.47282 * 55.58891 * 1 2 3 27 27 H 1.09001 * 109.47259 * 295.58867 * 1 2 3 28 28 H 1.08998 * 109.47002 * 120.00239 * 2 1 3 29 29 H 1.09000 * 109.47465 * 240.00507 * 2 1 3 30 30 H 0.96999 * 120.00560 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00027 * 209.88626 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.53446 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.54123 * 14 13 3 34 34 H 1.08000 * 126.29260 * 359.97376 * 16 15 14 35 35 H 1.08000 * 126.29164 * 179.97438 * 17 16 15 36 36 H 1.09000 * 109.46963 * 90.00342 * 24 23 15 37 37 H 1.09001 * 109.46937 * 210.00172 * 24 23 15 38 38 H 1.08994 * 109.47227 * 330.00365 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1360 7 6 1.8778 1.6795 -2.4834 8 7 2.6339 0.6098 -2.6009 9 14 1.2589 2.5581 -4.0112 10 1 2.2378 3.5998 -4.4139 11 1 1.0973 1.5778 -5.1148 12 1 -0.0502 3.1955 -3.7196 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9094 2.3421 15 6 1.9633 2.7220 3.5187 16 6 1.1619 2.2827 4.5103 17 6 0.9657 3.3566 5.4009 18 6 1.6551 4.4111 4.9199 19 6 1.7332 5.7776 5.5505 20 9 1.0693 5.7615 6.7819 21 9 3.0741 6.1240 5.7481 22 9 1.1286 6.7157 4.7070 23 7 2.2733 4.0262 3.7672 24 6 3.1280 4.8743 2.9327 25 1 -0.3634 -1.0246 -0.0791 26 1 -0.3634 0.5808 -0.8478 27 1 -0.3634 0.4439 0.9269 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.8705 0.2773 -3.4809 31 1 1.4287 3.1226 1.0209 32 1 2.4321 0.8515 2.6043 33 1 3.4528 2.2115 2.0781 34 1 0.7468 1.2901 4.6046 35 1 0.3723 3.3387 6.3031 36 1 2.5175 5.3830 2.1866 37 1 3.6280 5.6137 3.5585 38 1 3.8744 4.2575 2.4323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = -106.869253 kcal Electronic energy + Delta-G solvation = -23626.449392 eV Core-core repulsion = 19668.688060 eV Total energy + Delta-G solvation = -3957.761332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.27180 -47.81518 -47.74778 -41.37964 -36.39266 -33.11322 -32.94736 -31.19842 -29.86067 -27.17724 -26.48644 -25.39786 -23.45675 -23.02809 -20.89032 -19.63450 -19.07955 -18.63196 -18.31917 -18.09726 -16.55197 -15.51325 -15.25289 -14.97292 -14.59827 -14.57792 -14.30306 -14.21269 -14.00594 -13.91761 -13.80751 -13.54878 -13.24368 -13.14122 -12.49803 -12.35103 -12.26086 -12.13031 -11.96181 -11.53476 -11.44370 -10.98242 -10.83187 -10.45535 -10.16638 -9.78989 -9.43507 -8.87753 -8.70472 -8.55070 -8.25590 -7.37850 -6.09380 -4.15502 1.82142 2.34269 2.85160 2.90627 3.23970 3.32019 3.35456 3.65959 4.03405 4.30166 4.34225 4.70089 4.92784 5.10180 5.21657 5.30308 5.42097 5.45632 5.50021 5.81629 6.05265 6.11376 6.25357 6.49488 6.64219 6.80682 6.86138 7.05570 7.13923 7.18897 7.23044 7.41801 7.68304 7.70719 7.76292 8.16103 8.27256 8.52818 8.92220 9.49792 10.96292 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.003890 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.562421 B = 7196.437985 C = 7786.900736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.676 5.676 14 C 0.122 3.878 15 C 0.080 3.920 16 C -0.190 4.190 17 C -0.123 4.123 18 C -0.108 4.108 19 C 0.543 3.457 20 F -0.168 7.168 21 F -0.182 7.182 22 F -0.178 7.178 23 N -0.422 5.422 24 C 0.059 3.941 25 H 0.014 0.986 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.011 0.989 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 6.936 14.538 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.008 4.008 15 C -0.035 4.035 16 C -0.214 4.214 17 C -0.149 4.149 18 C -0.218 4.218 19 C 0.489 3.511 20 F -0.149 7.149 21 F -0.163 7.163 22 F -0.159 7.159 23 N -0.097 5.097 24 C -0.083 4.083 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.317 6.583 14.350 15.791 hybrid contribution 0.487 1.294 -1.043 1.732 sum 0.804 7.877 13.307 15.485 Atomic orbital electron populations 1.21451 0.97386 0.97503 1.01432 1.21436 0.95166 0.97991 0.99552 1.19199 0.92936 0.91659 0.85319 0.98105 1.21144 1.31874 1.12075 0.90253 0.92350 1.24869 0.94959 0.94945 0.98915 1.69874 1.36519 1.22554 1.23632 0.86575 0.79277 0.79347 0.82698 1.20827 1.21157 1.19830 1.60819 1.48244 1.15916 1.05778 1.20576 0.94001 0.98225 0.87980 1.20882 1.00714 0.82979 0.98924 1.20723 1.04571 1.00114 0.96018 1.20743 1.01459 0.91695 1.01048 1.19743 1.11918 0.94587 0.95566 1.17343 0.73502 0.84113 0.76186 1.93181 1.80868 1.96722 1.44142 1.93189 1.34645 1.93387 1.95117 1.93230 1.83491 1.68069 1.71131 1.43627 1.37484 1.10401 1.18160 1.22252 0.95029 0.95420 0.95578 0.96710 0.92546 0.93828 0.97063 0.89451 0.92863 0.85352 0.89035 0.95293 0.83482 0.83646 0.89844 0.89820 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.52 37.16 0.35 -2.26 16 2 C -0.10 -2.38 5.59 -26.73 -0.15 -2.53 16 3 C 0.22 5.04 2.30 -68.86 -0.16 4.88 16 4 H 0.00 0.03 7.71 -51.93 -0.40 -0.37 16 5 C -0.51 -13.19 7.26 -34.44 -0.25 -13.44 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.18 11.32 55.43 0.63 -23.56 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -13.27 5.64 -109.22 -0.62 -13.88 16 14 C 0.12 2.02 5.69 -4.97 -0.03 1.99 16 15 C 0.08 1.21 6.35 -81.79 -0.52 0.69 16 16 C -0.19 -2.71 10.76 -39.78 -0.43 -3.14 16 17 C -0.12 -1.63 10.26 -39.78 -0.41 -2.04 16 18 C -0.11 -1.47 6.32 -81.79 -0.52 -1.99 16 19 C 0.54 6.77 3.16 36.01 0.11 6.89 16 20 F -0.17 -2.00 16.75 2.25 0.04 -1.97 16 21 F -0.18 -2.22 15.96 2.25 0.04 -2.18 16 22 F -0.18 -2.30 17.30 2.25 0.04 -2.26 16 23 N -0.42 -5.90 3.15 -115.29 -0.36 -6.26 16 24 C 0.06 0.68 10.72 59.85 0.64 1.32 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 1.33 7.07 -51.93 -0.37 0.96 16 27 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 28 H 0.01 0.23 7.61 -51.93 -0.39 -0.16 16 29 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.33 6.48 8.13 -39.29 -0.32 6.16 16 32 H 0.09 1.50 7.61 -51.93 -0.40 1.11 16 33 H 0.03 0.48 7.01 -51.93 -0.36 0.11 16 34 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.15 1.61 7.94 -52.49 -0.42 1.19 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.85 6.63 -51.93 -0.34 0.51 16 38 H 0.09 1.06 7.11 -51.93 -0.37 0.69 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -26.97 325.11 -6.70 -33.67 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.89 Total: 4.04 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.44 Total: -8.01 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.35 Total: -43.70 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.97 -6.70 -33.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.200 kcal (2) G-P(sol) polarization free energy of solvation -26.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds