Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00082 * 2 1 4 4 C 1.50705 * 120.00164 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46942 * 95.00266 * 4 2 1 6 6 C 1.34776 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00093 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.98024 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99825 * 10 9 8 25 25 H 1.08003 * 119.99673 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46949 * 270.00298 * 3 2 1 28 28 H 1.08998 * 109.46950 * 30.00091 * 3 2 1 29 29 H 1.08992 * 109.46999 * 150.00110 * 3 2 1 30 30 H 1.08997 * 109.46955 * 335.00102 * 4 2 1 31 31 H 1.08995 * 109.47053 * 214.99790 * 4 2 1 32 32 H 0.97005 * 119.99925 * 359.97438 * 5 4 2 33 33 H 0.97004 * 119.99718 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46490 * 60.00223 * 9 8 6 35 35 H 1.08992 * 109.46880 * 300.00477 * 9 8 6 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 39 39 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3753 6 6 3.0927 -2.8055 -1.6201 7 8 3.4180 -3.5297 -0.6992 8 7 3.4128 -3.1400 -2.8859 9 6 4.1532 -4.3758 -3.1521 10 6 4.3828 -4.5144 -4.6351 11 6 3.4543 -5.1752 -5.4191 12 6 3.6616 -5.3049 -6.7801 13 6 4.7938 -4.7689 -7.3618 14 6 5.7305 -4.1099 -6.5767 15 8 6.8472 -3.5872 -7.1446 16 6 7.0472 -3.8459 -8.4527 17 1 6.2956 -4.3754 -9.0194 18 6 8.2177 -3.4322 -9.0701 19 7 9.1333 -2.7877 -8.3796 20 14 8.4950 -3.7912 -10.8822 21 1 7.9621 -2.6693 -11.6962 22 1 9.9496 -3.9426 -11.1400 23 1 7.7936 -5.0471 -11.2510 24 6 5.5197 -3.9819 -5.2097 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 2.2451 1.6198 -1.0276 28 1 1.4744 2.0647 0.5138 29 1 3.0158 1.1748 0.5138 30 1 1.4386 -2.0853 0.4352 31 1 2.9742 -1.1986 0.5899 32 1 2.1521 -1.0908 -2.1100 33 1 3.1536 -2.5620 -3.6206 34 1 3.5780 -5.2287 -2.7919 35 1 5.1136 -4.3419 -2.6378 36 1 2.5657 -5.5908 -4.9673 37 1 2.9351 -5.8218 -7.3895 38 1 4.9526 -4.8660 -8.4257 39 1 9.9523 -2.4986 -8.8115 40 1 6.2446 -3.4666 -4.5969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320579212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -19.710904 kcal Electronic energy + Delta-G solvation = -21571.472858 eV Core-core repulsion = 18159.347736 eV Total energy + Delta-G solvation = -3412.125122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00951 -39.08362 -37.11502 -36.57206 -34.40517 -33.46888 -32.33958 -30.70263 -29.14594 -27.72051 -26.85540 -25.54684 -24.72804 -21.72023 -20.97386 -20.77706 -19.39516 -18.30263 -17.55185 -17.01569 -16.30169 -15.79054 -15.21357 -15.02137 -14.77742 -14.53017 -14.37454 -14.31586 -13.86746 -13.62089 -13.48788 -13.36277 -12.81564 -12.48025 -12.38241 -12.07718 -11.99537 -11.67327 -11.44516 -11.38001 -10.93876 -10.82480 -10.70332 -10.48519 -10.27759 -9.56728 -9.41697 -9.29254 -8.90181 -8.75184 -8.25484 -7.33520 -6.49913 -4.09474 1.60458 1.92176 2.26497 3.02171 3.10018 3.11164 3.15379 3.27148 3.91869 4.31711 4.37319 4.56696 4.58576 4.94006 5.06496 5.10119 5.28423 5.30821 5.39646 5.47322 5.51947 5.55317 5.63876 5.77675 5.85238 5.94060 6.07249 6.16696 6.25038 6.34366 6.43533 6.55286 6.57643 6.81566 6.93029 7.00533 7.19252 7.27079 7.35175 7.70523 7.94215 8.05316 8.64187 8.95468 9.64232 10.67894 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002702 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.424951 B =10358.525273 C =10966.801242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.120 4.120 4 C 0.175 3.825 5 N -0.745 5.745 6 C 0.703 3.297 7 O -0.596 6.596 8 N -0.736 5.736 9 C 0.187 3.813 10 C -0.073 4.073 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.226 4.226 14 C 0.150 3.850 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.170 4.170 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.072 4.520 10.653 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.176 4.176 4 C 0.051 3.949 5 N -0.402 5.402 6 C 0.403 3.597 7 O -0.475 6.475 8 N -0.391 5.391 9 C 0.063 3.937 10 C -0.073 4.073 11 C -0.214 4.214 12 C -0.095 4.095 13 C -0.245 4.245 14 C 0.096 3.904 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.190 4.190 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.230 0.770 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.308 4.066 11.575 18.847 hybrid contribution -0.147 0.344 -1.746 1.785 sum -14.454 4.411 9.829 18.028 Atomic orbital electron populations 1.23882 0.95168 1.02332 0.99158 1.21867 0.95513 0.95626 1.01693 1.20873 1.00297 0.94035 1.02434 1.20133 0.99024 0.92958 0.82791 1.45117 1.61614 1.24372 1.09062 1.15962 0.78815 0.81429 0.83530 1.90914 1.60080 1.52968 1.43502 1.45257 1.61105 1.26398 1.06333 1.19997 0.96249 0.85427 0.91979 1.19284 0.94912 0.99589 0.93546 1.20489 1.00285 1.06700 0.93889 1.20745 0.96391 0.97868 0.94484 1.21240 0.96465 1.06002 1.00831 1.19327 0.87759 0.91354 0.91943 1.83982 1.35060 1.62899 1.26043 1.21323 1.04446 1.38811 0.82367 0.89043 1.25296 0.94485 0.96292 1.00401 1.70033 1.07761 1.35207 1.36584 0.85710 0.78174 0.79057 0.80482 1.19861 1.20209 1.19174 1.20098 0.99382 1.06976 0.92510 0.88101 0.87983 0.91243 0.91705 0.91542 0.91223 0.91087 0.76967 0.76739 0.91125 0.91023 0.87494 0.87301 0.85482 0.91944 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 13.89 29.02 0.40 -0.68 16 2 C -0.15 -1.08 5.42 -101.06 -0.55 -1.63 16 3 C -0.12 -0.77 10.03 36.01 0.36 -0.41 16 4 C 0.17 1.69 5.83 -5.19 -0.03 1.66 16 5 N -0.75 -7.92 5.55 -66.41 -0.37 -8.28 16 6 C 0.70 10.04 8.57 -86.91 -0.74 9.30 16 7 O -0.60 -10.82 16.34 5.29 0.09 -10.74 16 8 N -0.74 -9.88 5.55 -66.42 -0.37 -10.25 16 9 C 0.19 2.81 5.80 -5.19 -0.03 2.78 16 10 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 11 C -0.19 -3.17 9.70 -39.53 -0.38 -3.55 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 14 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 15 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 16 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 17 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 20 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 25 H 0.10 0.65 7.99 -52.48 -0.42 0.23 16 26 H 0.10 0.54 8.04 -52.49 -0.42 0.12 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.35 8.06 -51.93 -0.42 -0.07 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.71 7.99 -51.93 -0.41 0.30 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.40 3.33 8.48 -40.82 -0.35 2.98 16 33 H 0.40 4.69 8.48 -40.82 -0.35 4.35 16 34 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.07 1.13 8.08 -51.93 -0.42 0.72 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -32.10 349.56 -7.81 -39.91 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.44 Total: 9.21 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.72 Total: -11.16 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.02 Total: -42.69 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.10 -7.81 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320579212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.196 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds