Wall clock time and date at job start Tue Mar 31 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00082 * 2 1 4 4 C 1.50705 * 120.00164 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46942 * 95.00266 * 4 2 1 6 6 C 1.34776 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00093 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.98024 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99825 * 10 9 8 25 25 H 1.08003 * 119.99673 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46949 * 270.00298 * 3 2 1 28 28 H 1.08998 * 109.46950 * 30.00091 * 3 2 1 29 29 H 1.08992 * 109.46999 * 150.00110 * 3 2 1 30 30 H 1.08997 * 109.46955 * 335.00102 * 4 2 1 31 31 H 1.08995 * 109.47053 * 214.99790 * 4 2 1 32 32 H 0.97005 * 119.99925 * 359.97438 * 5 4 2 33 33 H 0.97004 * 119.99718 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.46490 * 60.00223 * 9 8 6 35 35 H 1.08992 * 109.46880 * 300.00477 * 9 8 6 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 39 39 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3753 6 6 3.0927 -2.8055 -1.6201 7 8 3.4180 -3.5297 -0.6992 8 7 3.4128 -3.1400 -2.8859 9 6 4.1532 -4.3758 -3.1521 10 6 4.3828 -4.5144 -4.6351 11 6 3.4543 -5.1752 -5.4191 12 6 3.6616 -5.3049 -6.7801 13 6 4.7938 -4.7689 -7.3618 14 6 5.7305 -4.1099 -6.5767 15 8 6.8472 -3.5872 -7.1446 16 6 7.0472 -3.8459 -8.4527 17 1 6.2956 -4.3754 -9.0194 18 6 8.2177 -3.4322 -9.0701 19 7 9.1333 -2.7877 -8.3796 20 14 8.4950 -3.7912 -10.8822 21 1 7.9621 -2.6693 -11.6962 22 1 9.9496 -3.9426 -11.1400 23 1 7.7936 -5.0471 -11.2510 24 6 5.5197 -3.9819 -5.2097 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 2.2451 1.6198 -1.0276 28 1 1.4744 2.0647 0.5138 29 1 3.0158 1.1748 0.5138 30 1 1.4386 -2.0853 0.4352 31 1 2.9742 -1.1986 0.5899 32 1 2.1521 -1.0908 -2.1100 33 1 3.1536 -2.5620 -3.6206 34 1 3.5780 -5.2287 -2.7919 35 1 5.1136 -4.3419 -2.6378 36 1 2.5657 -5.5908 -4.9673 37 1 2.9351 -5.8218 -7.3895 38 1 4.9526 -4.8660 -8.4257 39 1 9.9523 -2.4986 -8.8115 40 1 6.2446 -3.4666 -4.5969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320579212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:02 Heat of formation + Delta-G solvation = -41.708267 kcal Electronic energy + Delta-G solvation = -21572.426736 eV Core-core repulsion = 18159.347736 eV Total energy + Delta-G solvation = -3413.078999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20774 -40.67732 -38.56198 -37.54915 -35.71391 -34.40169 -34.24881 -32.10072 -30.75511 -28.32247 -27.88281 -27.28646 -26.01926 -23.26171 -22.47623 -21.99225 -20.24726 -19.65909 -19.05283 -18.51889 -17.40029 -16.92784 -16.69437 -16.33411 -16.10652 -15.84288 -15.61026 -15.43088 -15.33069 -14.86654 -14.75621 -14.32379 -13.94442 -13.89381 -13.75737 -13.43821 -13.01962 -13.01637 -12.57827 -12.53069 -12.36973 -12.27043 -12.11427 -12.03772 -11.50663 -11.20444 -10.81032 -10.41838 -10.14707 -9.79757 -9.75914 -9.03235 -8.46919 -6.15473 0.36184 0.70787 1.05028 1.35980 1.44817 1.53358 2.00317 2.12925 2.17731 2.82733 3.13892 3.38261 3.47955 3.74475 3.84044 3.98325 4.10208 4.31639 4.43225 4.50378 4.53642 4.63013 4.71947 4.74750 4.78268 4.84798 4.99545 5.02427 5.12027 5.15802 5.26191 5.39865 5.44731 5.62556 5.63461 5.71063 5.72486 5.85938 5.97311 6.02296 6.17355 6.97960 7.05041 7.54023 7.78395 8.76283 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002702 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.424951 B =10358.525273 C =10966.801242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C -0.118 4.118 4 C 0.174 3.826 5 N -0.730 5.730 6 C 0.700 3.300 7 O -0.636 6.636 8 N -0.729 5.729 9 C 0.193 3.807 10 C -0.058 4.058 11 C -0.167 4.167 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.112 3.888 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.180 4.180 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.410 0.590 33 H 0.408 0.592 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.420 3.903 10.405 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.175 4.175 4 C 0.051 3.949 5 N -0.386 5.386 6 C 0.400 3.600 7 O -0.518 6.518 8 N -0.385 5.385 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.087 4.087 13 C -0.253 4.253 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.176 1.176 24 C -0.200 4.200 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.244 0.756 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.735 3.468 11.335 21.331 hybrid contribution 0.587 0.462 -1.408 1.594 sum -17.148 3.930 9.927 20.200 Atomic orbital electron populations 1.24056 0.94769 1.03255 0.97063 1.21740 0.95749 0.94741 1.03480 1.20873 1.00106 0.93867 1.02663 1.20176 0.98698 0.94163 0.81895 1.45048 1.60248 1.23218 1.10099 1.16101 0.78870 0.81932 0.83066 1.90889 1.61769 1.54508 1.44662 1.45061 1.60743 1.26103 1.06557 1.19863 0.96295 0.86649 0.90241 1.19433 0.93589 0.98229 0.94596 1.20999 1.00485 1.03733 0.93368 1.21162 0.95519 0.96662 0.95379 1.21378 0.97280 1.06108 1.00570 1.19852 0.87698 0.92952 0.93313 1.83949 1.37669 1.65777 1.26526 1.21829 1.05144 1.39029 0.82836 0.87875 1.26587 0.93910 0.95936 1.05659 1.70185 1.08773 1.37993 1.39039 0.84591 0.78190 0.79591 0.73883 1.18740 1.19847 1.17551 1.20219 1.00606 1.07620 0.91559 0.87971 0.86248 0.91061 0.90399 0.92260 0.91797 0.92337 0.75440 0.75591 0.89732 0.92255 0.83420 0.83300 0.86131 0.91883 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 13.89 67.79 0.94 -0.66 16 2 C -0.16 -2.04 5.42 -16.48 -0.09 -2.13 16 3 C -0.12 -1.33 10.03 71.24 0.71 -0.62 16 4 C 0.17 3.21 5.83 85.63 0.50 3.71 16 5 N -0.73 -14.45 5.55 -482.29 -2.68 -17.13 16 6 C 0.70 19.12 8.57 179.05 1.53 20.65 16 7 O -0.64 -22.73 16.34 -3.99 -0.07 -22.79 16 8 N -0.73 -18.20 5.55 -482.30 -2.68 -20.88 16 9 C 0.19 5.44 5.80 85.63 0.50 5.93 16 10 C -0.06 -1.83 5.25 -19.88 -0.10 -1.94 16 11 C -0.17 -4.71 9.70 22.30 0.22 -4.49 16 12 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 13 C -0.23 -9.56 9.17 22.39 0.21 -9.36 16 14 C 0.11 5.37 6.65 22.58 0.15 5.52 16 15 O -0.23 -13.71 9.76 -22.74 -0.22 -13.93 16 16 C -0.41 -23.51 9.49 67.92 0.64 -22.86 16 17 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 18 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 19 N -0.92 -56.24 13.67 21.61 0.30 -55.94 16 20 Si 1.02 42.13 29.55 68.60 2.03 44.15 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 24 C -0.18 -7.39 9.65 22.39 0.22 -7.17 16 25 H 0.10 1.05 7.99 -2.91 -0.02 1.03 16 26 H 0.12 0.87 8.04 -2.91 -0.02 0.84 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.67 8.06 -2.39 -0.02 0.65 16 29 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.06 1.26 7.99 -2.39 -0.02 1.24 16 31 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.41 6.03 8.48 -92.70 -0.79 5.25 16 33 H 0.41 8.67 8.48 -92.71 -0.79 7.89 16 34 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 35 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -74.29 349.56 2.29 -72.01 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.51 Total: 30.71 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 6.11 Total: -16.20 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -5.06 Total: -93.95 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.29 Total: -36.72 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.29 2.29 -72.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320579212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.299 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds