Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 119.99717 * 2 1 4 4 C 1.30994 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.50707 * 120.00316 * 354.67756 * 4 2 1 6 6 N 1.46498 * 109.46960 * 233.74766 * 5 4 2 7 7 C 1.34779 * 119.99854 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00006 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.40028 * 119.99835 * 175.87700 * 9 7 6 11 11 C 1.38912 * 119.99526 * 215.73087 * 10 9 7 12 12 C 1.38009 * 119.99589 * 180.02562 * 11 10 9 13 13 C 1.38903 * 120.00287 * 0.02562 * 12 11 10 14 14 O 1.35789 * 120.00190 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99724 * 4.49200 * 14 13 12 16 16 H 1.08005 * 120.00364 * 354.99549 * 15 14 13 17 17 C 1.38629 * 120.00029 * 174.99860 * 15 14 13 18 18 N 1.31577 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99994 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47430 * 60.00109 * 19 17 15 21 21 H 1.48502 * 109.46925 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47197 * 299.99556 * 19 17 15 23 23 C 1.38904 * 120.00295 * 0.27008 * 13 12 11 24 24 C 1.38019 * 119.99467 * 359.45592 * 23 13 12 25 25 H 1.08998 * 109.47545 * 264.70483 * 1 2 3 26 26 H 1.09000 * 109.47041 * 24.70883 * 1 2 3 27 27 H 1.09005 * 109.47040 * 144.70358 * 1 2 3 28 28 H 1.09005 * 109.47060 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46975 * 299.98905 * 3 2 1 30 30 H 1.09003 * 109.47772 * 59.99316 * 3 2 1 31 31 H 1.08006 * 119.99911 * 174.67358 * 4 2 1 32 32 H 1.08997 * 109.47047 * 113.74196 * 5 4 2 33 33 H 1.09004 * 109.46581 * 353.73990 * 5 4 2 34 34 H 0.97002 * 120.00604 * 359.97438 * 6 5 4 35 35 H 0.96997 * 120.00279 * 355.86597 * 9 7 6 36 36 H 1.07995 * 120.00640 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.99982 * 179.97438 * 12 11 10 38 38 H 0.96995 * 120.00263 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.00577 * 179.70630 * 23 13 12 40 40 H 1.08003 * 119.99642 * 180.27558 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4134 -2.4368 0.1222 6 7 1.9662 -3.2158 1.2329 7 6 1.4495 -4.4243 1.5312 8 8 0.5249 -4.8682 0.8781 9 7 1.9584 -5.1413 2.5527 10 6 1.3670 -6.3569 2.9178 11 6 1.3164 -6.7307 4.2547 12 6 0.7340 -7.9291 4.6145 13 6 0.1991 -8.7616 3.6398 14 8 -0.3735 -9.9410 3.9937 15 6 -0.4736 -10.2011 5.3127 16 1 -0.0350 -9.5247 6.0314 17 6 -1.1397 -11.3368 5.7466 18 7 -1.6745 -12.1607 4.8711 19 14 -1.2791 -11.6969 7.5743 20 1 -1.9957 -10.5825 8.2451 21 1 -2.0330 -12.9606 7.7737 22 1 0.0800 -11.8335 8.1570 23 6 0.2552 -8.3908 2.3023 24 6 0.8325 -7.1897 1.9430 25 1 -0.3634 -0.0948 1.0232 26 1 -0.3633 0.9336 -0.4296 27 1 -0.3633 -0.8388 -0.5938 28 1 3.3322 1.1060 0.0005 29 1 1.9972 1.8766 -0.8902 30 1 1.9971 1.8768 0.8899 31 1 3.2386 -1.1364 -0.0863 32 1 1.5150 -3.0021 -0.8042 33 1 0.3591 -2.2336 0.3102 34 1 2.7041 -2.8619 1.7537 35 1 2.7343 -4.8153 3.0349 36 1 1.7333 -6.0840 5.0125 37 1 0.6949 -8.2199 5.6538 38 1 -2.1409 -12.9551 5.1747 39 1 -0.1565 -9.0403 1.5440 40 1 0.8722 -6.8993 0.9035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321070985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -13.888025 kcal Electronic energy + Delta-G solvation = -21575.299617 eV Core-core repulsion = 18163.426994 eV Total energy + Delta-G solvation = -3411.872623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26964 -38.77042 -37.48297 -36.42153 -34.23317 -33.81584 -32.12757 -30.15006 -29.42450 -28.17250 -27.43928 -25.32461 -24.16543 -22.20255 -21.54940 -20.52284 -18.94814 -17.99849 -17.67835 -17.27725 -16.53632 -15.82408 -15.30082 -14.75424 -14.69527 -14.51974 -14.27688 -14.17956 -13.74186 -13.50816 -13.39720 -12.89422 -12.75768 -12.73485 -12.41274 -12.31467 -11.93946 -11.77691 -11.51652 -11.44273 -11.23786 -10.98180 -10.70654 -10.45598 -9.94604 -9.59443 -9.37824 -9.18369 -8.95355 -8.64242 -8.14023 -6.85965 -6.39856 -3.98023 1.59902 2.22234 2.30798 2.92384 3.15395 3.16448 3.19723 3.38736 4.00587 4.35107 4.36873 4.52628 4.64025 4.89082 5.11709 5.13957 5.15824 5.17925 5.37037 5.39167 5.45331 5.53236 5.60722 5.64000 5.69118 5.84863 6.19713 6.23125 6.26002 6.30752 6.35191 6.53773 6.75372 6.90080 6.98111 7.17856 7.28277 7.32370 7.48711 7.86353 8.04498 8.11135 8.73435 9.05381 9.76775 10.78189 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.002396 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.402470 B =11682.394012 C =11835.696245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.188 4.188 5 C 0.165 3.835 6 N -0.745 5.745 7 C 0.698 3.302 8 O -0.576 6.576 9 N -0.675 5.675 10 C 0.054 3.946 11 C -0.092 4.092 12 C -0.220 4.220 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.179 4.179 24 C -0.066 4.066 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.400 23.103 -5.920 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.108 4.108 3 C -0.176 4.176 4 C -0.207 4.207 5 C 0.042 3.958 6 N -0.401 5.401 7 C 0.399 3.601 8 O -0.453 6.453 9 N -0.323 5.323 10 C -0.039 4.039 11 C -0.113 4.113 12 C -0.240 4.240 13 C 0.092 3.908 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.198 4.198 24 C -0.086 4.086 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.289 22.299 -6.678 24.709 hybrid contribution 0.767 0.274 1.476 1.686 sum 9.056 22.573 -5.202 24.872 Atomic orbital electron populations 1.20957 0.92076 1.02769 1.02725 1.21731 0.96113 0.95015 0.97957 1.20885 0.99504 0.94922 1.02289 1.22703 0.99832 0.93211 1.04918 1.20185 0.97319 0.88954 0.89370 1.45057 1.39860 1.18467 1.36741 1.15970 0.82316 0.80390 0.81431 1.90932 1.30886 1.70620 1.52868 1.42297 1.33095 1.21618 1.35278 1.17039 1.07373 0.86691 0.92811 1.20457 1.00638 0.97057 0.93110 1.20950 1.06572 0.96255 1.00221 1.19416 0.91938 0.86459 0.93008 1.83996 1.67990 1.29244 1.26883 1.21255 1.36747 1.09045 0.79723 0.89170 1.25280 0.95828 0.95270 1.00222 1.70039 1.33438 1.12264 1.34074 0.85790 0.78760 0.78225 0.80675 1.19558 1.20334 1.19558 1.20153 1.07675 0.98079 0.93940 1.20754 0.97245 0.91712 0.98930 0.91037 0.91698 0.90981 0.91916 0.91517 0.91205 0.86723 0.91124 0.90687 0.77231 0.76896 0.87266 0.85150 0.92023 0.86165 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 8.93 36.01 0.32 -0.55 16 2 C -0.11 -0.73 6.05 -101.06 -0.61 -1.34 16 3 C -0.12 -0.61 10.09 36.00 0.36 -0.24 16 4 C -0.19 -1.38 9.23 -36.02 -0.33 -1.71 16 5 C 0.17 1.63 5.71 -5.19 -0.03 1.60 16 6 N -0.74 -7.86 5.55 -66.41 -0.37 -8.23 16 7 C 0.70 10.54 8.40 -86.92 -0.73 9.81 16 8 O -0.58 -11.21 13.83 5.29 0.07 -11.14 16 9 N -0.68 -9.64 5.34 -14.18 -0.08 -9.71 16 10 C 0.05 0.99 6.29 -83.62 -0.53 0.46 16 11 C -0.09 -1.70 9.96 -39.42 -0.39 -2.09 16 12 C -0.22 -4.81 9.16 -39.42 -0.36 -5.18 16 13 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 14 O -0.18 -5.16 9.76 -0.02 0.00 -5.16 16 15 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 16 H 0.09 2.33 5.19 -52.48 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 19 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.18 -4.05 9.99 -39.42 -0.39 -4.44 16 24 C -0.07 -1.36 8.68 -39.42 -0.34 -1.70 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 28 H 0.06 0.28 7.79 -51.93 -0.40 -0.12 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.71 7.84 -52.48 -0.41 0.30 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.82 5.75 -51.93 -0.30 0.52 16 34 H 0.39 2.94 8.48 -40.82 -0.35 2.59 16 35 H 0.40 4.09 8.84 -40.82 -0.36 3.73 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.80 5.62 -52.49 -0.29 2.51 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 40 H 0.13 2.63 6.28 -52.48 -0.33 2.30 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -34.02 340.71 -7.76 -41.78 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.16 Total: 8.38 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.10 Total: -11.81 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.31 Total: -42.83 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.07 Total: -16.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.02 -7.76 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321070985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.892 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds