Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 119.99717 * 2 1 4 4 C 1.30994 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.50707 * 120.00316 * 354.67756 * 4 2 1 6 6 N 1.46498 * 109.46960 * 233.74766 * 5 4 2 7 7 C 1.34779 * 119.99854 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00006 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.40028 * 119.99835 * 175.87700 * 9 7 6 11 11 C 1.38912 * 119.99526 * 215.73087 * 10 9 7 12 12 C 1.38009 * 119.99589 * 180.02562 * 11 10 9 13 13 C 1.38903 * 120.00287 * 0.02562 * 12 11 10 14 14 O 1.35789 * 120.00190 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99724 * 4.49200 * 14 13 12 16 16 H 1.08005 * 120.00364 * 354.99549 * 15 14 13 17 17 C 1.38629 * 120.00029 * 174.99860 * 15 14 13 18 18 N 1.31577 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99994 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47430 * 60.00109 * 19 17 15 21 21 H 1.48502 * 109.46925 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47197 * 299.99556 * 19 17 15 23 23 C 1.38904 * 120.00295 * 0.27008 * 13 12 11 24 24 C 1.38019 * 119.99467 * 359.45592 * 23 13 12 25 25 H 1.08998 * 109.47545 * 264.70483 * 1 2 3 26 26 H 1.09000 * 109.47041 * 24.70883 * 1 2 3 27 27 H 1.09005 * 109.47040 * 144.70358 * 1 2 3 28 28 H 1.09005 * 109.47060 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.46975 * 299.98905 * 3 2 1 30 30 H 1.09003 * 109.47772 * 59.99316 * 3 2 1 31 31 H 1.08006 * 119.99911 * 174.67358 * 4 2 1 32 32 H 1.08997 * 109.47047 * 113.74196 * 5 4 2 33 33 H 1.09004 * 109.46581 * 353.73990 * 5 4 2 34 34 H 0.97002 * 120.00604 * 359.97438 * 6 5 4 35 35 H 0.96997 * 120.00279 * 355.86597 * 9 7 6 36 36 H 1.07995 * 120.00640 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.99982 * 179.97438 * 12 11 10 38 38 H 0.96995 * 120.00263 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.00577 * 179.70630 * 23 13 12 40 40 H 1.08003 * 119.99642 * 180.27558 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4134 -2.4368 0.1222 6 7 1.9662 -3.2158 1.2329 7 6 1.4495 -4.4243 1.5312 8 8 0.5249 -4.8682 0.8781 9 7 1.9584 -5.1413 2.5527 10 6 1.3670 -6.3569 2.9178 11 6 1.3164 -6.7307 4.2547 12 6 0.7340 -7.9291 4.6145 13 6 0.1991 -8.7616 3.6398 14 8 -0.3735 -9.9410 3.9937 15 6 -0.4736 -10.2011 5.3127 16 1 -0.0350 -9.5247 6.0314 17 6 -1.1397 -11.3368 5.7466 18 7 -1.6745 -12.1607 4.8711 19 14 -1.2791 -11.6969 7.5743 20 1 -1.9957 -10.5825 8.2451 21 1 -2.0330 -12.9606 7.7737 22 1 0.0800 -11.8335 8.1570 23 6 0.2552 -8.3908 2.3023 24 6 0.8325 -7.1897 1.9430 25 1 -0.3634 -0.0948 1.0232 26 1 -0.3633 0.9336 -0.4296 27 1 -0.3633 -0.8388 -0.5938 28 1 3.3322 1.1060 0.0005 29 1 1.9972 1.8766 -0.8902 30 1 1.9971 1.8768 0.8899 31 1 3.2386 -1.1364 -0.0863 32 1 1.5150 -3.0021 -0.8042 33 1 0.3591 -2.2336 0.3102 34 1 2.7041 -2.8619 1.7537 35 1 2.7343 -4.8153 3.0349 36 1 1.7333 -6.0840 5.0125 37 1 0.6949 -8.2199 5.6538 38 1 -2.1409 -12.9551 5.1747 39 1 -0.1565 -9.0403 1.5440 40 1 0.8722 -6.8993 0.9035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321070985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -37.264930 kcal Electronic energy + Delta-G solvation = -21576.313316 eV Core-core repulsion = 18163.426994 eV Total energy + Delta-G solvation = -3412.886322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60687 -40.46885 -38.55825 -37.74348 -35.44488 -35.09605 -34.10299 -31.84711 -30.37013 -28.96543 -28.56600 -27.26871 -25.01155 -23.86805 -23.01694 -21.90096 -20.19775 -19.52972 -18.99816 -18.61877 -18.00557 -16.83312 -16.47707 -16.34184 -16.04330 -15.77214 -15.52100 -15.43487 -15.02326 -14.83180 -14.54374 -14.43026 -14.18072 -13.65569 -13.52070 -13.26042 -13.20604 -13.10808 -12.79918 -12.65681 -12.43770 -12.41773 -12.14209 -11.82603 -11.37196 -11.34783 -10.95145 -10.55130 -10.19453 -9.82351 -9.67383 -8.56407 -8.43089 -6.10640 0.54725 0.60236 0.98353 1.37822 1.48710 1.54548 1.83836 2.10394 2.21176 2.85895 3.18404 3.33395 3.54655 3.78796 4.02704 4.07850 4.16404 4.31280 4.46542 4.52123 4.57416 4.65637 4.71372 4.78454 4.82404 4.94011 4.95775 5.08412 5.11868 5.19775 5.22359 5.32632 5.42174 5.46836 5.60723 5.69334 5.71194 5.93929 6.02825 6.06330 6.21730 7.00766 7.06997 7.54846 7.82192 8.80002 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.002396 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.402470 B =11682.394012 C =11835.696245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.119 4.119 4 C -0.193 4.193 5 C 0.164 3.836 6 N -0.721 5.721 7 C 0.695 3.305 8 O -0.623 6.623 9 N -0.662 5.662 10 C 0.081 3.919 11 C -0.079 4.079 12 C -0.220 4.220 13 C 0.106 3.894 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.027 4.027 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.190 4.190 24 C -0.073 4.073 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.159 0.841 37 H 0.134 0.866 38 H 0.272 0.728 39 H 0.111 0.889 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 26.666 -4.382 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 C -0.175 4.175 4 C -0.211 4.211 5 C 0.041 3.959 6 N -0.378 5.378 7 C 0.395 3.605 8 O -0.503 6.503 9 N -0.312 5.312 10 C -0.014 4.014 11 C -0.100 4.100 12 C -0.239 4.239 13 C 0.056 3.944 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.224 4.224 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.178 1.178 23 C -0.210 4.210 24 C -0.093 4.093 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.261 0.739 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.537 25.977 -5.147 28.501 hybrid contribution 0.211 -0.480 0.774 0.935 sum 10.749 25.496 -4.373 28.013 Atomic orbital electron populations 1.20994 0.92478 1.03060 1.02428 1.21960 0.96091 0.95806 0.96550 1.20922 0.99767 0.93891 1.02959 1.22597 1.00431 0.91780 1.06271 1.20215 0.97245 0.89992 0.88452 1.44882 1.39579 1.16733 1.36583 1.16167 0.81954 0.81361 0.80977 1.90919 1.33072 1.71912 1.54381 1.42076 1.33673 1.20071 1.35355 1.17135 1.04580 0.87179 0.92476 1.20814 0.99022 0.96052 0.94066 1.21121 1.06162 0.96926 0.99737 1.19862 0.93447 0.86712 0.94427 1.83964 1.70658 1.31709 1.27529 1.21840 1.37157 1.09791 0.80089 0.87571 1.26652 0.95115 0.94724 1.05908 1.70205 1.35676 1.13367 1.36895 0.84613 0.79509 0.78261 0.73598 1.18137 1.19981 1.17834 1.20256 1.08338 0.99049 0.93385 1.20836 0.97521 0.91246 0.99714 0.91379 0.90413 0.92020 0.91049 0.90788 0.90512 0.84987 0.92303 0.91866 0.74908 0.73931 0.82314 0.84875 0.91942 0.87122 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.93 71.24 0.64 -0.97 16 2 C -0.10 -1.15 6.05 -16.48 -0.10 -1.25 16 3 C -0.12 -0.84 10.09 71.24 0.72 -0.12 16 4 C -0.19 -2.32 9.23 25.66 0.24 -2.08 16 5 C 0.16 2.98 5.71 85.64 0.49 3.47 16 6 N -0.72 -13.19 5.55 -482.28 -2.68 -15.86 16 7 C 0.69 19.33 8.40 179.05 1.50 20.83 16 8 O -0.62 -23.72 13.83 -4.00 -0.06 -23.78 16 9 N -0.66 -16.53 5.34 -317.05 -1.69 -18.22 16 10 C 0.08 2.77 6.29 38.15 0.24 3.01 16 11 C -0.08 -2.66 9.96 22.38 0.22 -2.44 16 12 C -0.22 -9.44 9.16 22.37 0.20 -9.24 16 13 C 0.11 5.47 6.65 22.59 0.15 5.62 16 14 O -0.23 -14.27 9.76 -22.99 -0.22 -14.49 16 15 C -0.41 -24.11 9.48 67.91 0.64 -23.47 16 16 H 0.11 5.55 5.19 -2.91 -0.02 5.54 16 17 C -0.03 -1.54 5.49 84.82 0.47 -1.08 16 18 N -0.92 -57.61 13.67 21.61 0.30 -57.32 16 19 Si 1.02 42.88 29.55 68.60 2.03 44.90 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 21 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 23 C -0.19 -8.99 9.99 22.38 0.22 -8.77 16 24 C -0.07 -2.98 8.68 22.38 0.19 -2.78 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 27 H 0.06 0.87 6.68 -2.38 -0.02 0.85 16 28 H 0.07 0.40 7.79 -2.38 -0.02 0.38 16 29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.13 1.16 7.84 -2.91 -0.02 1.13 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.32 5.75 -2.38 -0.01 1.31 16 34 H 0.41 4.49 8.48 -92.71 -0.79 3.70 16 35 H 0.42 6.57 8.84 -92.71 -0.82 5.75 16 36 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.13 5.60 5.62 -2.91 -0.02 5.58 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 40 H 0.13 5.32 6.28 -2.91 -0.02 5.31 16 Total: -1.00 -79.09 340.71 2.98 -76.11 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.52 Total: 27.91 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 5.83 Total: -19.26 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.08 Total: -91.40 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.28 Total: -38.27 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.09 2.98 -76.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321070985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.843 kcal (2) G-P(sol) polarization free energy of solvation -79.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds