Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46931 * 2 1 4 4 C 1.53497 * 114.20457 * 184.99788 * 3 2 1 5 5 N 1.47063 * 87.98321 * 220.14997 * 4 3 2 6 6 C 1.34777 * 136.05664 * 207.08691 * 5 4 3 7 7 O 1.21593 * 119.99780 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00388 * 179.97438 * 6 5 4 9 9 C 1.40025 * 120.00504 * 175.49278 * 8 6 5 10 10 C 1.38908 * 120.00362 * 215.38543 * 9 8 6 11 11 C 1.38006 * 120.00022 * 180.27302 * 10 9 8 12 12 C 1.38905 * 119.99692 * 359.47077 * 11 10 9 13 13 O 1.35786 * 119.99503 * 180.29731 * 12 11 10 14 14 C 1.34815 * 117.00458 * 354.65973 * 13 12 11 15 15 H 1.07999 * 119.99682 * 5.03263 * 14 13 12 16 16 C 1.38631 * 120.00125 * 185.03915 * 14 13 12 17 17 N 1.31574 * 119.99790 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99626 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47364 * 59.99893 * 18 16 14 20 20 H 1.48500 * 109.46699 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47043 * 299.99549 * 18 16 14 22 22 C 1.38896 * 120.00494 * 0.27480 * 12 11 10 23 23 C 1.38006 * 120.00180 * 359.97438 * 22 12 11 24 24 C 1.47065 * 87.88584 * 27.34320 * 5 4 3 25 25 H 1.09000 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47401 * 300.00297 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99955 * 1 2 3 28 28 H 1.08994 * 109.47110 * 240.00168 * 2 1 3 29 29 H 1.09000 * 109.46974 * 120.00045 * 2 1 3 30 30 H 1.08998 * 113.28140 * 318.06462 * 3 2 1 31 31 H 1.09000 * 113.46569 * 105.36729 * 4 3 2 32 32 H 1.09002 * 113.51717 * 334.93833 * 4 3 2 33 33 H 0.97008 * 119.99398 * 355.49397 * 8 6 5 34 34 H 1.08000 * 119.99887 * 0.04310 * 10 9 8 35 35 H 1.07993 * 120.00182 * 179.74660 * 11 10 9 36 36 H 0.97003 * 119.99352 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.00515 * 179.97438 * 22 12 11 38 38 H 1.08002 * 120.00621 * 180.02562 * 23 22 12 39 39 H 1.08994 * 113.46790 * 87.43997 * 24 5 4 40 40 H 1.09003 * 113.46435 * 217.87409 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5647 1.5711 -0.1220 5 7 3.5000 2.6582 0.8663 6 6 4.2347 3.7500 1.1575 7 8 5.2287 4.0055 0.5054 8 7 3.8677 4.5585 2.1714 9 6 4.6808 5.6390 2.5349 10 6 4.7886 6.0091 3.8694 11 6 5.5856 7.0775 4.2270 12 6 6.2886 7.7759 3.2536 13 8 7.0775 8.8233 3.6061 14 6 7.0487 9.2033 4.8993 15 1 6.4809 8.6309 5.6178 16 6 7.7479 10.3290 5.3067 17 7 8.4399 11.0262 4.4314 18 14 7.7073 10.8558 7.0984 19 1 8.2544 9.7669 7.9471 20 1 8.5299 12.0797 7.2732 21 1 6.3058 11.1393 7.4994 22 6 6.1850 7.4026 1.9197 23 6 5.3841 6.3374 1.5615 24 6 2.2846 2.0262 1.4012 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4813 2.0970 -0.6691 31 1 3.8952 1.8993 -1.1074 32 1 4.1049 0.6934 0.2329 33 1 3.0402 4.3919 2.6494 34 1 4.2458 5.4631 4.6268 35 1 5.6662 7.3679 5.2640 36 1 8.9294 11.8136 4.7167 37 1 6.7313 7.9458 1.1628 38 1 5.3038 6.0467 0.5244 39 1 2.4865 1.2683 2.1580 40 1 1.5245 2.7424 1.7136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326655569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = 11.330448 kcal Electronic energy + Delta-G solvation = -21931.741621 eV Core-core repulsion = 18520.962553 eV Total energy + Delta-G solvation = -3410.779068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80252 -39.32422 -38.27480 -36.33141 -33.96511 -33.58694 -32.13924 -30.16058 -29.38286 -27.29705 -26.29887 -25.28776 -23.91758 -22.20336 -21.44692 -20.69979 -19.65803 -18.23161 -17.79705 -17.21756 -16.38132 -16.14406 -15.52798 -14.86492 -14.53299 -14.49354 -14.33792 -14.10441 -13.52503 -13.49201 -13.28611 -12.86428 -12.75830 -12.64314 -12.43123 -12.09320 -11.78996 -11.52871 -11.50836 -11.42874 -11.32491 -10.99268 -10.72022 -10.67929 -10.46106 -9.87741 -9.53680 -9.23003 -8.86018 -8.64333 -8.15075 -6.86489 -6.40389 -3.98565 2.20188 2.26385 2.45459 3.15201 3.15424 3.19289 3.34433 3.82233 3.95089 4.00314 4.42188 4.58482 4.65717 4.74078 4.91916 5.04995 5.09485 5.14057 5.18510 5.30439 5.32331 5.37952 5.48581 5.56285 5.60099 5.64469 5.75808 5.84303 5.94965 6.19725 6.27741 6.35187 6.82874 6.90994 7.00845 7.17872 7.27448 7.38649 7.47577 7.85216 8.03715 8.07373 8.71322 9.04793 9.76178 10.77629 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047583 B = 0.002567 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.302895 B =10904.011067 C =11334.994984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.129 3.871 5 N -0.670 5.670 6 C 0.730 3.270 7 O -0.572 6.572 8 N -0.672 5.672 9 C 0.053 3.947 10 C -0.092 4.092 11 C -0.219 4.219 12 C 0.146 3.854 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.178 4.178 23 C -0.068 4.068 24 C 0.102 3.898 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.397 0.603 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 -20.124 -5.209 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.144 4.144 4 C 0.006 3.994 5 N -0.410 5.410 6 C 0.434 3.566 7 O -0.449 6.449 8 N -0.318 5.318 9 C -0.039 4.039 10 C -0.112 4.112 11 C -0.239 4.239 12 C 0.092 3.908 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.198 4.198 23 C -0.088 4.088 24 C -0.021 4.021 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.998 -19.373 -5.765 25.169 hybrid contribution -0.440 0.089 1.352 1.424 sum -15.438 -19.284 -4.414 25.093 Atomic orbital electron populations 1.21758 0.95368 1.01754 1.02063 1.21425 0.96284 0.94665 1.02667 1.23134 0.96057 0.97667 0.97511 1.22850 0.95025 0.88274 0.93300 1.48622 1.30067 1.24174 1.38146 1.15269 0.81470 0.78645 0.81205 1.90934 1.26855 1.74086 1.53007 1.42217 1.25096 1.28911 1.35598 1.17060 1.01944 0.91995 0.92927 1.20440 0.99773 0.98001 0.93026 1.20944 1.03313 0.99431 1.00229 1.19412 0.89742 0.88773 0.92867 1.83994 1.54060 1.40915 1.29129 1.21256 1.32568 1.10892 0.82061 0.89177 1.25283 0.95992 0.95204 1.00127 1.70044 1.28808 1.16726 1.34219 0.85785 0.78650 0.78411 0.80580 1.19562 1.20326 1.19550 1.20156 1.05016 1.00698 0.93893 1.20790 0.96108 0.92909 0.98975 1.23134 0.86336 0.95993 0.96660 0.92647 0.92560 0.92596 0.91176 0.91399 0.87691 0.90419 0.90108 0.76975 0.87289 0.85114 0.92018 0.86122 0.85199 0.89932 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.90 37.16 0.37 -0.23 16 2 C -0.11 -0.47 5.85 -26.73 -0.16 -0.63 16 3 C -0.12 -0.74 4.01 -89.97 -0.36 -1.10 16 4 C 0.13 1.12 8.19 -8.51 -0.07 1.05 16 5 N -0.67 -7.81 3.69 -190.87 -0.70 -8.51 16 6 C 0.73 11.93 8.64 -86.92 -0.75 11.17 16 7 O -0.57 -11.81 14.55 5.28 0.08 -11.73 16 8 N -0.67 -10.30 5.34 -14.18 -0.08 -10.37 16 9 C 0.05 1.01 6.30 -83.62 -0.53 0.49 16 10 C -0.09 -1.72 9.96 -39.42 -0.39 -2.12 16 11 C -0.22 -4.84 9.16 -39.42 -0.36 -5.20 16 12 C 0.15 3.66 6.65 -39.09 -0.26 3.40 16 13 O -0.18 -5.18 9.76 -0.02 0.00 -5.18 16 14 C -0.39 -11.07 9.48 30.88 0.29 -10.78 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 18 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.18 -4.08 9.98 -39.42 -0.39 -4.48 16 23 C -0.07 -1.42 8.69 -39.42 -0.34 -1.76 16 24 C 0.10 0.72 7.88 -8.38 -0.07 0.66 16 25 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.26 7.81 -51.93 -0.41 -0.14 16 30 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.40 4.66 8.55 -40.82 -0.35 4.31 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.12 2.68 8.06 -52.48 -0.42 2.26 16 38 H 0.13 2.72 6.22 -52.49 -0.33 2.40 16 39 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -34.65 338.86 -8.39 -43.04 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.42 Total: 5.47 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.12 Total: -8.57 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.02 Total: -43.80 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.08 Total: -16.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.65 -8.39 -43.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326655569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.374 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds