Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46931 * 2 1 4 4 C 1.53497 * 114.20457 * 184.99788 * 3 2 1 5 5 N 1.47063 * 87.98321 * 220.14997 * 4 3 2 6 6 C 1.34777 * 136.05664 * 207.08691 * 5 4 3 7 7 O 1.21593 * 119.99780 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00388 * 179.97438 * 6 5 4 9 9 C 1.40025 * 120.00504 * 175.49278 * 8 6 5 10 10 C 1.38908 * 120.00362 * 215.38543 * 9 8 6 11 11 C 1.38006 * 120.00022 * 180.27302 * 10 9 8 12 12 C 1.38905 * 119.99692 * 359.47077 * 11 10 9 13 13 O 1.35786 * 119.99503 * 180.29731 * 12 11 10 14 14 C 1.34815 * 117.00458 * 354.65973 * 13 12 11 15 15 H 1.07999 * 119.99682 * 5.03263 * 14 13 12 16 16 C 1.38631 * 120.00125 * 185.03915 * 14 13 12 17 17 N 1.31574 * 119.99790 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99626 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47364 * 59.99893 * 18 16 14 20 20 H 1.48500 * 109.46699 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47043 * 299.99549 * 18 16 14 22 22 C 1.38896 * 120.00494 * 0.27480 * 12 11 10 23 23 C 1.38006 * 120.00180 * 359.97438 * 22 12 11 24 24 C 1.47065 * 87.88584 * 27.34320 * 5 4 3 25 25 H 1.09000 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47401 * 300.00297 * 1 2 3 27 27 H 1.09000 * 109.46974 * 59.99955 * 1 2 3 28 28 H 1.08994 * 109.47110 * 240.00168 * 2 1 3 29 29 H 1.09000 * 109.46974 * 120.00045 * 2 1 3 30 30 H 1.08998 * 113.28140 * 318.06462 * 3 2 1 31 31 H 1.09000 * 113.46569 * 105.36729 * 4 3 2 32 32 H 1.09002 * 113.51717 * 334.93833 * 4 3 2 33 33 H 0.97008 * 119.99398 * 355.49397 * 8 6 5 34 34 H 1.08000 * 119.99887 * 0.04310 * 10 9 8 35 35 H 1.07993 * 120.00182 * 179.74660 * 11 10 9 36 36 H 0.97003 * 119.99352 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.00515 * 179.97438 * 22 12 11 38 38 H 1.08002 * 120.00621 * 180.02562 * 23 22 12 39 39 H 1.08994 * 113.46790 * 87.43997 * 24 5 4 40 40 H 1.09003 * 113.46435 * 217.87409 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5647 1.5711 -0.1220 5 7 3.5000 2.6582 0.8663 6 6 4.2347 3.7500 1.1575 7 8 5.2287 4.0055 0.5054 8 7 3.8677 4.5585 2.1714 9 6 4.6808 5.6390 2.5349 10 6 4.7886 6.0091 3.8694 11 6 5.5856 7.0775 4.2270 12 6 6.2886 7.7759 3.2536 13 8 7.0775 8.8233 3.6061 14 6 7.0487 9.2033 4.8993 15 1 6.4809 8.6309 5.6178 16 6 7.7479 10.3290 5.3067 17 7 8.4399 11.0262 4.4314 18 14 7.7073 10.8558 7.0984 19 1 8.2544 9.7669 7.9471 20 1 8.5299 12.0797 7.2732 21 1 6.3058 11.1393 7.4994 22 6 6.1850 7.4026 1.9197 23 6 5.3841 6.3374 1.5615 24 6 2.2846 2.0262 1.4012 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4813 2.0970 -0.6691 31 1 3.8952 1.8993 -1.1074 32 1 4.1049 0.6934 0.2329 33 1 3.0402 4.3919 2.6494 34 1 4.2458 5.4631 4.6268 35 1 5.6662 7.3679 5.2640 36 1 8.9294 11.8136 4.7167 37 1 6.7313 7.9458 1.1628 38 1 5.3038 6.0467 0.5244 39 1 2.4865 1.2683 2.1580 40 1 1.5245 2.7424 1.7136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326655569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -11.692936 kcal Electronic energy + Delta-G solvation = -21932.739990 eV Core-core repulsion = 18520.962553 eV Total energy + Delta-G solvation = -3411.777437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85836 -40.79260 -39.70453 -38.00019 -35.41575 -34.30304 -34.03518 -31.88210 -30.49864 -28.66141 -27.27202 -26.92374 -24.63862 -23.88598 -22.86577 -21.59774 -20.72804 -19.84279 -19.12811 -18.89955 -17.98321 -16.97636 -16.60460 -16.36074 -16.17063 -15.66787 -15.50280 -15.30731 -15.17125 -14.66339 -14.55025 -14.17328 -14.04552 -13.60368 -13.42843 -13.27840 -13.24858 -13.00303 -12.67799 -12.59368 -12.47622 -12.15072 -11.89734 -11.81345 -11.32694 -11.25542 -11.16085 -10.94236 -10.57706 -9.85801 -9.76318 -8.58696 -8.44075 -6.11864 0.51299 0.56688 1.36207 1.37551 1.48396 1.54247 2.05168 2.20266 2.83230 2.85560 3.16527 3.32306 3.51589 3.93858 4.01606 4.05743 4.13454 4.33993 4.37630 4.48999 4.55283 4.56307 4.59456 4.67951 4.73065 4.74643 4.83213 4.98648 5.07886 5.19636 5.24447 5.30140 5.31040 5.41062 5.46665 5.56139 5.58606 5.67996 6.03370 6.16865 6.20097 6.93010 6.99584 7.48157 7.80416 8.78933 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047583 B = 0.002567 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.302895 B =10904.011067 C =11334.994984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.104 4.104 4 C 0.117 3.883 5 N -0.673 5.673 6 C 0.722 3.278 7 O -0.625 6.625 8 N -0.660 5.660 9 C 0.079 3.921 10 C -0.079 4.079 11 C -0.218 4.218 12 C 0.108 3.892 13 O -0.231 6.231 14 C -0.413 4.413 15 H 0.107 0.893 16 C -0.027 4.027 17 N -0.923 5.923 18 Si 1.022 2.978 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.189 4.189 23 C -0.075 4.075 24 C 0.101 3.899 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.419 0.581 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.272 0.728 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 -23.132 -3.411 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.123 4.123 4 C -0.005 4.005 5 N -0.412 5.412 6 C 0.426 3.574 7 O -0.506 6.506 8 N -0.309 5.309 9 C -0.015 4.015 10 C -0.099 4.099 11 C -0.237 4.237 12 C 0.057 3.943 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.125 0.875 16 C -0.224 4.224 17 N -0.561 5.561 18 Si 0.841 3.159 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.179 1.179 22 C -0.209 4.209 23 C -0.095 4.095 24 C -0.020 4.020 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.256 0.744 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.150 -22.493 -3.983 29.176 hybrid contribution 0.299 0.676 0.563 0.929 sum -17.851 -21.818 -3.420 28.397 Atomic orbital electron populations 1.21760 0.94999 1.02111 1.02104 1.21398 0.96442 0.93178 1.03409 1.23008 0.93694 0.98912 0.96699 1.23197 0.97481 0.87642 0.92204 1.48761 1.30503 1.23152 1.38745 1.15497 0.81381 0.79770 0.80766 1.90903 1.29383 1.75626 1.54666 1.42009 1.25453 1.27707 1.35716 1.17171 1.00155 0.91518 0.92667 1.20787 0.98570 0.96697 0.93864 1.21115 1.03029 0.99797 0.99791 1.19840 0.91119 0.89113 0.94241 1.83964 1.56691 1.43232 1.29892 1.21848 1.33089 1.11613 0.82391 0.87545 1.26666 0.95217 0.94877 1.05620 1.70210 1.30927 1.17867 1.37100 0.84602 0.79423 0.78137 0.73752 1.18061 1.19963 1.17858 1.20249 1.05705 1.01534 0.93426 1.20848 0.96387 0.92634 0.99637 1.23489 0.84427 0.96385 0.97706 0.92188 0.92274 0.92854 0.90731 0.90460 0.87744 0.91768 0.88598 0.74364 0.82374 0.84700 0.91914 0.87038 0.85353 0.87793 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.90 71.98 0.71 0.01 16 2 C -0.11 -0.51 5.85 30.60 0.18 -0.33 16 3 C -0.10 -0.89 4.01 -10.37 -0.04 -0.93 16 4 C 0.12 1.78 8.19 83.18 0.68 2.46 16 5 N -0.67 -13.91 3.69 -876.03 -3.23 -17.14 16 6 C 0.72 22.28 8.64 179.05 1.55 23.82 16 7 O -0.62 -25.72 14.55 -4.01 -0.06 -25.77 16 8 N -0.66 -18.26 5.34 -317.04 -1.69 -19.96 16 9 C 0.08 2.85 6.30 38.15 0.24 3.09 16 10 C -0.08 -2.73 9.96 22.38 0.22 -2.51 16 11 C -0.22 -9.47 9.16 22.37 0.20 -9.26 16 12 C 0.11 5.60 6.65 22.59 0.15 5.75 16 13 O -0.23 -14.29 9.76 -22.98 -0.22 -14.51 16 14 C -0.41 -24.20 9.48 67.91 0.64 -23.56 16 15 H 0.11 5.57 5.20 -2.91 -0.02 5.56 16 16 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 17 N -0.92 -57.65 13.67 21.61 0.30 -57.35 16 18 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 22 C -0.19 -9.10 9.98 22.37 0.22 -8.88 16 23 C -0.07 -3.16 8.69 22.38 0.19 -2.97 16 24 C 0.10 1.01 7.88 83.26 0.66 1.66 16 25 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.27 7.81 -2.39 -0.02 0.25 16 30 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 33 H 0.42 7.96 8.55 -92.70 -0.79 7.17 16 34 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.14 5.70 5.63 -2.91 -0.02 5.69 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 38 H 0.13 5.50 6.22 -2.91 -0.02 5.48 16 39 H 0.10 0.69 7.88 -2.39 -0.02 0.67 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -81.16 338.86 3.46 -77.70 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.27 Total: 24.84 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 6.08 Total: -12.70 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.63 Total: -94.44 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.28 Total: -40.28 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -81.16 3.46 -77.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326655569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.003 kcal (2) G-P(sol) polarization free energy of solvation -81.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds