Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46889 * 2 1 4 4 C 1.38285 * 119.92906 * 90.00140 * 3 2 1 5 5 C 1.38111 * 120.06848 * 179.97438 * 4 3 2 6 6 C 1.38872 * 119.92795 * 359.97438 * 5 4 3 7 7 N 1.39944 * 120.06715 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99898 * 146.84419 * 7 6 5 9 9 O 1.21590 * 119.99955 * 354.68882 * 8 7 6 10 10 N 1.34776 * 120.00175 * 174.68701 * 8 7 6 11 11 C 1.47578 * 134.49815 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11969 * 155.35766 * 11 10 8 13 13 O 1.42895 * 113.74391 * 269.15623 * 12 11 10 14 14 C 1.50696 * 113.74118 * 137.95454 * 12 11 10 15 15 H 1.08006 * 119.99743 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00407 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99567 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00219 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47237 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47289 * 300.00046 * 18 16 14 21 21 H 1.48502 * 109.47447 * 60.00129 * 18 16 14 22 22 C 1.47582 * 134.49145 * 0.02562 * 10 8 7 23 23 C 1.38868 * 119.86149 * 0.27788 * 6 5 4 24 24 C 1.38112 * 119.92649 * 359.46893 * 23 6 5 25 25 H 1.09004 * 109.47077 * 300.00253 * 1 2 3 26 26 H 1.08999 * 109.46657 * 59.99989 * 1 2 3 27 27 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47003 * 240.00037 * 2 1 3 29 29 H 1.08999 * 109.47144 * 119.99802 * 2 1 3 30 30 H 1.07994 * 119.96411 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.03496 * 179.97438 * 5 4 3 32 32 H 0.97003 * 120.00181 * 326.84997 * 7 6 5 33 33 H 1.09007 * 113.76212 * 41.05606 * 11 10 8 34 34 H 1.08994 * 113.86850 * 269.67803 * 11 10 8 35 35 H 0.96697 * 114.00356 * 178.07443 * 13 12 11 36 36 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 37 37 H 1.09005 * 113.76647 * 90.33700 * 22 10 8 38 38 H 1.09010 * 113.76930 * 318.94687 * 22 10 8 39 39 H 1.07995 * 120.03342 * 179.70229 * 23 6 5 40 40 H 1.08004 * 119.96444 * 180.23685 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7232 3.3733 1.2018 6 6 2.9560 4.0290 0.0000 7 7 3.4235 5.3481 0.0000 8 6 4.2507 5.7699 -0.9770 9 8 4.6678 4.9812 -1.8030 10 7 4.6155 7.0659 -1.0383 11 6 5.4766 7.8565 -1.9390 12 6 4.6401 9.0723 -1.5007 13 8 3.5062 9.3211 -2.3340 14 6 5.4593 10.3097 -1.2386 15 1 6.5318 10.2837 -1.3636 16 6 4.8399 11.4746 -0.8382 17 7 3.5341 11.5057 -0.6845 18 14 5.8555 13.0082 -0.5126 19 1 4.9589 14.1167 -0.0971 20 1 6.8352 12.7327 0.5689 21 1 6.5799 13.3942 -1.7501 22 6 4.3142 8.2644 -0.2315 23 6 2.7191 3.3747 -1.2018 24 6 2.2633 2.0710 -1.1984 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0814 1.5608 2.1327 31 1 2.9022 3.8810 2.1381 32 1 3.1522 5.9588 0.7031 33 1 5.3619 7.6011 -2.9925 34 1 6.5189 7.9037 -1.6237 35 1 2.9617 10.0661 -2.0451 36 1 3.0984 12.3252 -0.4024 37 1 5.0147 8.4304 0.5870 38 1 3.2715 8.3347 0.0785 39 1 2.8947 3.8836 -2.1381 40 1 2.0824 1.5603 -2.1327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347191198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -21.813990 kcal Electronic energy + Delta-G solvation = -22494.147141 eV Core-core repulsion = 19081.930823 eV Total energy + Delta-G solvation = -3412.216319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33361 -39.08269 -37.62727 -35.03312 -34.00798 -32.86989 -32.23591 -30.82127 -29.22978 -27.68786 -25.36773 -25.29987 -23.56105 -22.83937 -21.10770 -20.23631 -18.95885 -17.88407 -17.39117 -16.81028 -15.76824 -15.46705 -15.26487 -14.94856 -14.65466 -14.16122 -13.95414 -13.73967 -13.51115 -13.37356 -13.18955 -12.61891 -12.56939 -12.51609 -12.14018 -11.91890 -11.58177 -11.37627 -11.13533 -11.09915 -11.04894 -10.88597 -10.57229 -10.33155 -10.02675 -9.80852 -9.36213 -8.81491 -8.79378 -8.49496 -8.03020 -7.64428 -6.43296 -4.53644 1.42497 1.53832 2.91488 3.13870 3.19994 3.22712 3.52928 4.00084 4.14237 4.28797 4.75149 4.81619 4.81898 5.07783 5.11833 5.25247 5.44260 5.48313 5.51425 5.58798 5.71087 5.78034 5.89630 5.93489 6.04441 6.05609 6.14069 6.29342 6.33851 6.42440 6.47870 6.57921 6.61482 6.71634 6.76162 7.03240 7.24152 7.56911 7.60504 7.77824 8.49359 8.53524 8.98083 9.17846 9.42289 10.63387 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041043 B = 0.002974 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.046892 B = 9414.062444 C = 9563.734471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.113 4.113 4 C -0.098 4.098 5 C -0.153 4.153 6 C 0.178 3.822 7 N -0.688 5.688 8 C 0.720 3.280 9 O -0.592 6.592 10 N -0.648 5.648 11 C 0.133 3.867 12 C 0.241 3.759 13 O -0.572 6.572 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.074 3.926 23 C -0.119 4.119 24 C -0.097 4.097 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.405 0.595 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -14.290 5.145 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.116 4.116 5 C -0.174 4.174 6 C 0.082 3.918 7 N -0.335 5.335 8 C 0.424 3.576 9 O -0.471 6.471 10 N -0.385 5.385 11 C 0.011 3.989 12 C 0.199 3.801 13 O -0.384 6.384 14 C -0.575 4.575 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.736 3.264 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.048 4.048 23 C -0.140 4.140 24 C -0.116 4.116 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.241 0.759 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.240 -15.326 4.239 16.457 hybrid contribution 0.135 1.688 1.076 2.007 sum -4.105 -13.638 5.316 15.202 Atomic orbital electron populations 1.21760 0.95052 1.01325 1.02257 1.20463 0.95902 0.92863 1.02471 1.19782 1.02014 0.96434 0.93180 1.20694 0.99638 0.93916 0.97400 1.20820 1.04974 0.95300 0.96355 1.17574 0.96119 0.84153 0.93972 1.42660 1.50260 1.10975 1.29571 1.15491 0.79126 0.81412 0.81532 1.90864 1.60638 1.53093 1.42536 1.49374 1.50587 1.04382 1.34118 1.23388 0.94351 0.86811 0.94371 1.19790 0.84719 0.90518 0.85026 1.86064 1.40784 1.56918 1.54654 1.21466 0.94421 0.94930 1.46698 0.91029 1.25072 0.95215 0.99301 0.93456 1.69315 1.08520 1.29078 1.46983 0.86370 0.79794 0.81269 0.78974 1.21008 1.19910 1.19810 1.24337 1.00216 0.81325 0.98965 1.21244 0.99249 0.95445 0.98072 1.20872 0.98993 0.94250 0.97437 0.92625 0.92549 0.92727 0.91306 0.91384 0.86131 0.85967 0.75940 0.91036 0.89709 0.75191 0.91570 0.90098 0.91615 0.84567 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.81 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.11 -1.34 5.14 -104.59 -0.54 -1.87 16 4 C -0.10 -1.14 9.69 -39.61 -0.38 -1.53 16 5 C -0.15 -2.02 9.96 -39.39 -0.39 -2.41 16 6 C 0.18 2.85 6.28 -83.69 -0.53 2.33 16 7 N -0.69 -11.75 5.34 -14.22 -0.08 -11.83 16 8 C 0.72 15.00 8.50 -86.92 -0.74 14.26 16 9 O -0.59 -13.85 14.77 5.29 0.08 -13.77 16 10 N -0.65 -13.57 3.61 -184.07 -0.66 -14.24 16 11 C 0.13 2.87 8.23 -2.98 -0.02 2.84 16 12 C 0.24 5.65 1.44 -90.85 -0.13 5.52 16 13 O -0.57 -14.46 13.48 -35.23 -0.48 -14.94 16 14 C -0.54 -13.13 8.62 -34.44 -0.30 -13.43 16 15 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 16 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 17 N -0.90 -22.25 11.09 55.43 0.61 -21.63 16 18 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.07 1.54 7.84 -2.98 -0.02 1.52 16 23 C -0.12 -1.97 8.65 -39.39 -0.34 -2.31 16 24 C -0.10 -1.31 9.69 -39.61 -0.38 -1.69 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.41 6.01 8.44 -40.82 -0.34 5.67 16 33 H 0.07 1.57 8.14 -51.92 -0.42 1.15 16 34 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 35 H 0.39 10.01 6.46 45.56 0.29 10.31 16 36 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 38 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 39 H 0.14 2.55 6.42 -52.49 -0.34 2.21 16 40 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -28.18 339.22 -9.10 -37.28 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -4.99 Total: 16.74 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.68 Total: 3.20 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.13 Total: -47.70 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.40 Total: -28.71 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.18 -9.10 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347191198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.471 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds