Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50708 * 109.46889 * 2 1 4 4 C 1.38285 * 119.92906 * 90.00140 * 3 2 1 5 5 C 1.38111 * 120.06848 * 179.97438 * 4 3 2 6 6 C 1.38872 * 119.92795 * 359.97438 * 5 4 3 7 7 N 1.39944 * 120.06715 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99898 * 146.84419 * 7 6 5 9 9 O 1.21590 * 119.99955 * 354.68882 * 8 7 6 10 10 N 1.34776 * 120.00175 * 174.68701 * 8 7 6 11 11 C 1.47578 * 134.49815 * 180.02562 * 10 8 7 12 12 C 1.53942 * 86.11969 * 155.35766 * 11 10 8 13 13 O 1.42895 * 113.74391 * 269.15623 * 12 11 10 14 14 C 1.50696 * 113.74118 * 137.95454 * 12 11 10 15 15 H 1.08006 * 119.99743 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00407 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99567 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00219 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47237 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47289 * 300.00046 * 18 16 14 21 21 H 1.48502 * 109.47447 * 60.00129 * 18 16 14 22 22 C 1.47582 * 134.49145 * 0.02562 * 10 8 7 23 23 C 1.38868 * 119.86149 * 0.27788 * 6 5 4 24 24 C 1.38112 * 119.92649 * 359.46893 * 23 6 5 25 25 H 1.09004 * 109.47077 * 300.00253 * 1 2 3 26 26 H 1.08999 * 109.46657 * 59.99989 * 1 2 3 27 27 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47003 * 240.00037 * 2 1 3 29 29 H 1.08999 * 109.47144 * 119.99802 * 2 1 3 30 30 H 1.07994 * 119.96411 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.03496 * 179.97438 * 5 4 3 32 32 H 0.97003 * 120.00181 * 326.84997 * 7 6 5 33 33 H 1.09007 * 113.76212 * 41.05606 * 11 10 8 34 34 H 1.08994 * 113.86850 * 269.67803 * 11 10 8 35 35 H 0.96697 * 114.00356 * 178.07443 * 13 12 11 36 36 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 37 37 H 1.09005 * 113.76647 * 90.33700 * 22 10 8 38 38 H 1.09010 * 113.76930 * 318.94687 * 22 10 8 39 39 H 1.07995 * 120.03342 * 179.70229 * 23 6 5 40 40 H 1.08004 * 119.96444 * 180.23685 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7232 3.3733 1.2018 6 6 2.9560 4.0290 0.0000 7 7 3.4235 5.3481 0.0000 8 6 4.2507 5.7699 -0.9770 9 8 4.6678 4.9812 -1.8030 10 7 4.6155 7.0659 -1.0383 11 6 5.4766 7.8565 -1.9390 12 6 4.6401 9.0723 -1.5007 13 8 3.5062 9.3211 -2.3340 14 6 5.4593 10.3097 -1.2386 15 1 6.5318 10.2837 -1.3636 16 6 4.8399 11.4746 -0.8382 17 7 3.5341 11.5057 -0.6845 18 14 5.8555 13.0082 -0.5126 19 1 4.9589 14.1167 -0.0971 20 1 6.8352 12.7327 0.5689 21 1 6.5799 13.3942 -1.7501 22 6 4.3142 8.2644 -0.2315 23 6 2.7191 3.3747 -1.2018 24 6 2.2633 2.0710 -1.1984 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0814 1.5608 2.1327 31 1 2.9022 3.8810 2.1381 32 1 3.1522 5.9588 0.7031 33 1 5.3619 7.6011 -2.9925 34 1 6.5189 7.9037 -1.6237 35 1 2.9617 10.0661 -2.0451 36 1 3.0984 12.3252 -0.4024 37 1 5.0147 8.4304 0.5870 38 1 3.2715 8.3347 0.0785 39 1 2.8947 3.8836 -2.1381 40 1 2.0824 1.5603 -2.1327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347191198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -39.457704 kcal Electronic energy + Delta-G solvation = -22494.912230 eV Core-core repulsion = 19081.930823 eV Total energy + Delta-G solvation = -3412.981408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79709 -40.44893 -39.14641 -36.29831 -35.85520 -34.13732 -33.90558 -31.87693 -30.67769 -28.99867 -27.04809 -27.02207 -24.53791 -23.92572 -22.35814 -21.57900 -20.57673 -19.55783 -18.91853 -18.35795 -17.21450 -16.94347 -16.63720 -16.45701 -15.97624 -15.78083 -15.22107 -14.98266 -14.62198 -14.45751 -14.37221 -14.22482 -14.00249 -13.87421 -13.43114 -13.39717 -12.93731 -12.85264 -12.75748 -12.30069 -12.24625 -12.21386 -11.93878 -11.68471 -11.55616 -11.24157 -11.05236 -10.65916 -10.31217 -9.86834 -9.66898 -8.89621 -8.27120 -6.43953 0.33309 0.47290 1.41152 1.48551 1.51536 1.58143 2.00384 2.40308 2.77901 2.86759 2.97560 3.70961 3.91560 3.94017 4.08082 4.14733 4.28519 4.40021 4.48636 4.52288 4.57972 4.59924 4.64656 4.70155 4.81292 4.85087 4.85826 5.08061 5.13818 5.17800 5.21401 5.36464 5.41096 5.46106 5.59190 5.72487 5.73982 5.91716 6.11527 6.17282 6.61523 6.92554 7.28790 7.41340 7.46334 8.78700 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041043 B = 0.002974 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.046892 B = 9414.062444 C = 9563.734471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.105 4.105 4 C -0.094 4.094 5 C -0.146 4.146 6 C 0.144 3.856 7 N -0.676 5.676 8 C 0.716 3.284 9 O -0.624 6.624 10 N -0.650 5.650 11 C 0.133 3.867 12 C 0.222 3.778 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.917 5.917 18 Si 0.969 3.031 19 H -0.283 1.283 20 H -0.267 1.267 21 H -0.275 1.275 22 C 0.091 3.909 23 C -0.146 4.146 24 C -0.104 4.104 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.388 0.612 36 H 0.276 0.724 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 -15.627 7.304 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.112 4.112 5 C -0.167 4.167 6 C 0.049 3.951 7 N -0.323 5.323 8 C 0.420 3.580 9 O -0.506 6.506 10 N -0.387 5.387 11 C 0.011 3.989 12 C 0.180 3.820 13 O -0.399 6.399 14 C -0.593 4.593 15 H 0.092 0.908 16 C -0.168 4.168 17 N -0.557 5.557 18 Si 0.794 3.206 19 H -0.209 1.209 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.032 4.032 23 C -0.167 4.167 24 C -0.123 4.123 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.164 0.836 32 H 0.252 0.748 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.475 -16.687 6.426 18.433 hybrid contribution 0.138 1.984 0.389 2.027 sum -4.337 -14.703 6.815 16.776 Atomic orbital electron populations 1.21749 0.94239 1.02399 1.01859 1.20545 0.96455 0.90809 1.03762 1.20192 1.00113 0.97785 0.92480 1.21150 0.97994 0.93275 0.98795 1.21108 1.03763 0.95860 0.95970 1.17864 0.98232 0.83931 0.95077 1.42461 1.49316 1.11842 1.28729 1.15656 0.79472 0.80985 0.81936 1.90835 1.61965 1.53818 1.43982 1.49309 1.50712 1.04628 1.34050 1.23394 0.95246 0.86294 0.94011 1.20067 0.84491 0.91128 0.86291 1.86053 1.41469 1.56748 1.55649 1.21690 0.94706 0.95730 1.47155 0.90809 1.25747 0.96141 1.01659 0.93227 1.69380 1.09488 1.29687 1.47147 0.85429 0.78422 0.78037 0.78666 1.20875 1.19195 1.20084 1.24147 1.00572 0.80340 0.98111 1.21136 1.01520 0.96916 0.97085 1.21057 0.98855 0.93259 0.99122 0.92504 0.93519 0.90966 0.90729 0.89474 0.82568 0.83645 0.74760 0.92295 0.87859 0.75690 0.91419 0.88769 0.91512 0.88051 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.90 71.98 0.71 -1.18 16 2 C -0.08 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.10 -2.23 5.14 -19.84 -0.10 -2.33 16 4 C -0.09 -1.88 9.69 22.25 0.22 -1.67 16 5 C -0.15 -3.54 9.96 22.39 0.22 -3.31 16 6 C 0.14 4.60 6.28 38.15 0.24 4.84 16 7 N -0.68 -23.28 5.34 -317.17 -1.70 -24.97 16 8 C 0.72 30.51 8.50 179.05 1.52 32.03 16 9 O -0.62 -30.37 14.77 -4.00 -0.06 -30.43 16 10 N -0.65 -27.60 3.61 -858.37 -3.10 -30.69 16 11 C 0.13 5.83 8.23 86.48 0.71 6.54 16 12 C 0.22 10.47 1.44 -10.88 -0.02 10.45 16 13 O -0.59 -30.42 13.48 -148.98 -2.01 -32.43 16 14 C -0.55 -27.06 8.62 25.60 0.22 -26.84 16 15 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 16 C 0.03 1.58 5.40 84.65 0.46 2.04 16 17 N -0.92 -45.29 11.09 21.45 0.24 -45.05 16 18 Si 0.97 38.61 29.54 68.60 2.03 40.64 16 19 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 C 0.09 3.75 7.84 86.48 0.68 4.43 16 23 C -0.15 -4.96 8.65 22.39 0.19 -4.77 16 24 C -0.10 -2.78 9.69 22.25 0.22 -2.56 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 29 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.42 12.15 8.44 -92.71 -0.78 11.37 16 33 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.10 4.07 8.09 -2.39 -0.02 4.05 16 35 H 0.39 20.31 6.46 -74.06 -0.48 19.83 16 36 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 37 H 0.09 3.63 8.09 -2.38 -0.02 3.61 16 38 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.10 4.10 6.42 -2.91 -0.02 4.08 16 40 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -61.40 339.22 0.66 -60.74 By element: Atomic # 1 Polarization: 45.68 SS G_CDS: -0.20 Total: 45.48 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.45 Total: 16.72 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -4.55 Total: -100.71 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -2.07 Total: -62.86 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -61.40 0.66 -60.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347191198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.281 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds