Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47292 * 2 1 4 4 C 1.31001 * 120.00727 * 124.99777 * 3 2 1 5 5 C 1.50691 * 120.00727 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47013 * 124.99800 * 5 4 3 7 7 C 1.34781 * 119.99688 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.40022 * 120.00176 * 175.49455 * 9 7 6 11 11 C 1.38908 * 120.00352 * 215.12379 * 10 9 7 12 12 C 1.38003 * 120.00179 * 180.02562 * 11 10 9 13 13 C 1.38899 * 119.99996 * 0.02562 * 12 11 10 14 14 O 1.35783 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34820 * 117.00252 * 5.33726 * 14 13 12 16 16 H 1.08001 * 119.99593 * 354.96888 * 15 14 13 17 17 C 1.38634 * 120.00020 * 174.96470 * 15 14 13 18 18 N 1.31572 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47182 * 60.00498 * 19 17 15 21 21 H 1.48501 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47501 * 300.00326 * 19 17 15 23 23 C 1.38902 * 120.00661 * 0.26478 * 13 12 11 24 24 C 1.38008 * 119.99473 * 359.45951 * 23 13 12 25 25 H 1.08997 * 109.47567 * 60.00149 * 1 2 3 26 26 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47539 * 299.99803 * 1 2 3 28 28 H 1.09005 * 109.47161 * 239.99542 * 2 1 3 29 29 H 1.09005 * 109.47215 * 119.99901 * 2 1 3 30 30 H 1.08011 * 119.99862 * 305.00070 * 3 2 1 31 31 H 1.08005 * 119.99249 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47212 * 5.00485 * 5 4 3 33 33 H 1.09000 * 109.47540 * 245.00455 * 5 4 3 34 34 H 0.96993 * 120.00341 * 0.02562 * 6 5 4 35 35 H 0.96997 * 119.99675 * 355.48546 * 9 7 6 36 36 H 1.07998 * 119.99489 * 359.97438 * 11 10 9 37 37 H 1.08004 * 120.00410 * 179.97438 * 12 11 10 38 38 H 0.97004 * 119.99768 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.00563 * 179.70790 * 23 13 12 40 40 H 1.08001 * 120.00490 * 180.27632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8641 1.8215 0.9293 5 6 3.3669 3.2420 0.9290 6 7 3.0842 3.8604 2.2267 7 6 3.4465 5.1379 2.4575 8 8 4.0074 5.7773 1.5887 9 7 3.1869 5.7067 3.6516 10 6 3.6460 7.0009 3.9253 11 6 4.0572 7.3350 5.2093 12 6 4.5092 8.6107 5.4791 13 6 4.5525 9.5608 4.4668 14 8 4.9967 10.8161 4.7324 15 6 5.4840 11.0441 5.9686 16 1 5.4337 10.2701 6.7201 17 6 6.0498 12.2721 6.2750 18 7 6.1107 13.2151 5.3595 19 14 6.7243 12.5883 7.9880 20 1 7.8041 11.6123 8.2828 21 1 7.2704 13.9675 8.0582 22 1 5.6343 12.4367 8.9850 23 6 4.1357 9.2286 3.1841 24 6 3.6891 7.9512 2.9129 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7065 2.1087 -0.7662 31 1 3.1896 1.1336 1.6957 32 1 2.8655 3.8048 0.1415 33 1 4.4422 3.2469 0.7506 34 1 2.6364 3.3505 2.9196 35 1 2.6819 5.2195 4.3213 36 1 4.0223 6.5966 5.9967 37 1 4.8285 8.8707 6.4776 38 1 6.5063 14.0745 5.5740 39 1 4.1650 9.9686 2.3981 40 1 3.3692 7.6915 1.9146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347961359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -16.922206 kcal Electronic energy + Delta-G solvation = -21316.895121 eV Core-core repulsion = 17904.890926 eV Total energy + Delta-G solvation = -3412.004195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27291 -38.75330 -37.10336 -36.31895 -34.46858 -33.88941 -32.15363 -31.19330 -30.15278 -27.94519 -26.14359 -25.19543 -22.80425 -22.17682 -21.51912 -20.65921 -20.02352 -18.45153 -17.74074 -17.34825 -16.55511 -15.67865 -15.39239 -15.03162 -14.70127 -14.52175 -14.29160 -14.13302 -13.67572 -13.51553 -13.49178 -13.17497 -12.76056 -12.50881 -12.39893 -12.18686 -11.77619 -11.52119 -11.48398 -11.45762 -11.25051 -10.98484 -10.71120 -10.45774 -10.00789 -9.62980 -9.55248 -9.19882 -9.07813 -8.64613 -8.14375 -6.86080 -6.39913 -3.98090 1.64364 2.21925 2.30648 2.89489 3.15380 3.16289 3.19695 3.37765 4.00563 4.26961 4.34598 4.56244 4.63904 4.81688 4.88934 4.98114 5.13975 5.19589 5.39308 5.43488 5.48337 5.50706 5.58244 5.60890 5.76039 5.84410 6.19174 6.21084 6.24142 6.28070 6.33351 6.46130 6.74225 6.89990 6.97651 7.17366 7.27876 7.31583 7.48414 7.86027 8.04376 8.09660 8.71756 9.05332 9.76689 10.78111 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054725 B = 0.002223 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.528124 B =12595.367005 C =12838.636626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.134 4.134 4 C -0.178 4.178 5 C 0.169 3.831 6 N -0.746 5.746 7 C 0.698 3.302 8 O -0.576 6.576 9 N -0.675 5.675 10 C 0.054 3.946 11 C -0.092 4.092 12 C -0.220 4.220 13 C 0.145 3.855 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.178 4.178 24 C -0.067 4.067 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.395 0.605 35 H 0.397 0.603 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 -24.111 -5.200 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.153 4.153 4 C -0.197 4.197 5 C 0.046 3.954 6 N -0.403 5.403 7 C 0.399 3.601 8 O -0.453 6.453 9 N -0.322 5.322 10 C -0.039 4.039 11 C -0.113 4.113 12 C -0.240 4.240 13 C 0.092 3.908 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.198 4.198 24 C -0.087 4.087 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.691 -23.079 -6.185 25.425 hybrid contribution -0.044 -0.458 1.609 1.673 sum -8.735 -23.537 -4.576 25.519 Atomic orbital electron populations 1.21714 0.94904 1.01774 1.02235 1.20683 0.96332 0.94046 1.02527 1.23005 0.96147 0.97508 0.98658 1.22914 0.99632 0.96622 1.00507 1.20141 1.00937 0.89631 0.84737 1.45081 1.65793 1.12184 1.17226 1.15976 0.79591 0.81382 0.83163 1.90930 1.47447 1.62354 1.44529 1.42295 1.58127 1.15992 1.15827 1.17046 1.08896 0.83207 0.94776 1.20450 0.99602 0.96519 0.94736 1.20947 1.09162 0.93492 1.00371 1.19414 0.92794 0.85688 0.92933 1.83994 1.68172 1.22451 1.33522 1.21257 1.38877 1.00355 0.86295 0.89175 1.25277 0.96766 0.94773 0.99759 1.70041 1.41758 1.04536 1.33467 0.85790 0.79224 0.78012 0.80428 1.19557 1.20327 1.19570 1.20156 1.08051 0.96672 0.94947 1.20778 0.98400 0.90859 0.98700 0.92490 0.92493 0.92511 0.90895 0.91474 0.86916 0.86777 0.91288 0.90798 0.77175 0.76880 0.87259 0.85148 0.92027 0.86162 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.35 16 2 C -0.10 -0.50 6.38 -27.89 -0.18 -0.68 16 3 C -0.13 -0.84 9.12 -36.03 -0.33 -1.17 16 4 C -0.18 -1.21 9.24 -36.03 -0.33 -1.55 16 5 C 0.17 1.61 6.11 -5.20 -0.03 1.58 16 6 N -0.75 -7.69 5.55 -66.41 -0.37 -8.06 16 7 C 0.70 10.45 8.41 -86.91 -0.73 9.72 16 8 O -0.58 -11.16 13.78 5.29 0.07 -11.09 16 9 N -0.68 -9.57 5.34 -14.18 -0.08 -9.65 16 10 C 0.05 0.98 6.30 -83.62 -0.53 0.46 16 11 C -0.09 -1.70 9.96 -39.42 -0.39 -2.09 16 12 C -0.22 -4.80 9.16 -39.42 -0.36 -5.17 16 13 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 14 O -0.18 -5.17 9.76 -0.03 0.00 -5.17 16 15 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 19 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 C -0.18 -4.04 9.99 -39.42 -0.39 -4.44 16 24 C -0.07 -1.38 8.69 -39.41 -0.34 -1.72 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 30 H 0.11 0.71 7.84 -52.48 -0.41 0.30 16 31 H 0.11 0.66 7.84 -52.48 -0.41 0.25 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.39 2.83 8.48 -40.82 -0.35 2.49 16 35 H 0.40 4.05 8.84 -40.82 -0.36 3.69 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 40 H 0.13 2.65 6.23 -52.49 -0.33 2.32 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -33.94 344.62 -8.09 -42.03 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.33 Total: 7.80 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.31 Total: -11.82 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.31 Total: -42.58 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.07 Total: -16.26 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.94 -8.09 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347961359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.105 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds