Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47292 * 2 1 4 4 C 1.31001 * 120.00727 * 124.99777 * 3 2 1 5 5 C 1.50691 * 120.00727 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47013 * 124.99800 * 5 4 3 7 7 C 1.34781 * 119.99688 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.40022 * 120.00176 * 175.49455 * 9 7 6 11 11 C 1.38908 * 120.00352 * 215.12379 * 10 9 7 12 12 C 1.38003 * 120.00179 * 180.02562 * 11 10 9 13 13 C 1.38899 * 119.99996 * 0.02562 * 12 11 10 14 14 O 1.35783 * 119.99801 * 179.97438 * 13 12 11 15 15 C 1.34820 * 117.00252 * 5.33726 * 14 13 12 16 16 H 1.08001 * 119.99593 * 354.96888 * 15 14 13 17 17 C 1.38634 * 120.00020 * 174.96470 * 15 14 13 18 18 N 1.31572 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47182 * 60.00498 * 19 17 15 21 21 H 1.48501 * 109.46873 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47501 * 300.00326 * 19 17 15 23 23 C 1.38902 * 120.00661 * 0.26478 * 13 12 11 24 24 C 1.38008 * 119.99473 * 359.45951 * 23 13 12 25 25 H 1.08997 * 109.47567 * 60.00149 * 1 2 3 26 26 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47539 * 299.99803 * 1 2 3 28 28 H 1.09005 * 109.47161 * 239.99542 * 2 1 3 29 29 H 1.09005 * 109.47215 * 119.99901 * 2 1 3 30 30 H 1.08011 * 119.99862 * 305.00070 * 3 2 1 31 31 H 1.08005 * 119.99249 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47212 * 5.00485 * 5 4 3 33 33 H 1.09000 * 109.47540 * 245.00455 * 5 4 3 34 34 H 0.96993 * 120.00341 * 0.02562 * 6 5 4 35 35 H 0.96997 * 119.99675 * 355.48546 * 9 7 6 36 36 H 1.07998 * 119.99489 * 359.97438 * 11 10 9 37 37 H 1.08004 * 120.00410 * 179.97438 * 12 11 10 38 38 H 0.97004 * 119.99768 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.00563 * 179.70790 * 23 13 12 40 40 H 1.08001 * 120.00490 * 180.27632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8641 1.8215 0.9293 5 6 3.3669 3.2420 0.9290 6 7 3.0842 3.8604 2.2267 7 6 3.4465 5.1379 2.4575 8 8 4.0074 5.7773 1.5887 9 7 3.1869 5.7067 3.6516 10 6 3.6460 7.0009 3.9253 11 6 4.0572 7.3350 5.2093 12 6 4.5092 8.6107 5.4791 13 6 4.5525 9.5608 4.4668 14 8 4.9967 10.8161 4.7324 15 6 5.4840 11.0441 5.9686 16 1 5.4337 10.2701 6.7201 17 6 6.0498 12.2721 6.2750 18 7 6.1107 13.2151 5.3595 19 14 6.7243 12.5883 7.9880 20 1 7.8041 11.6123 8.2828 21 1 7.2704 13.9675 8.0582 22 1 5.6343 12.4367 8.9850 23 6 4.1357 9.2286 3.1841 24 6 3.6891 7.9512 2.9129 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7065 2.1087 -0.7662 31 1 3.1896 1.1336 1.6957 32 1 2.8655 3.8048 0.1415 33 1 4.4422 3.2469 0.7506 34 1 2.6364 3.3505 2.9196 35 1 2.6819 5.2195 4.3213 36 1 4.0223 6.5966 5.9967 37 1 4.8285 8.8707 6.4776 38 1 6.5063 14.0745 5.5740 39 1 4.1650 9.9686 2.3981 40 1 3.3692 7.6915 1.9146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347961359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -39.988735 kcal Electronic energy + Delta-G solvation = -21317.895361 eV Core-core repulsion = 17904.890926 eV Total energy + Delta-G solvation = -3413.004435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60663 -40.46053 -38.43620 -37.33815 -35.46542 -35.24667 -34.12131 -31.88912 -31.84393 -29.43923 -27.43895 -26.72336 -23.94888 -23.46280 -22.78330 -21.93830 -20.76008 -19.95408 -19.22122 -18.97332 -18.14625 -16.73529 -16.45478 -16.31930 -16.15626 -15.77793 -15.47645 -15.40224 -15.14034 -14.95267 -14.53448 -14.26174 -14.19139 -13.87458 -13.55976 -13.26527 -13.16378 -12.88182 -12.72823 -12.65485 -12.43289 -12.14185 -11.85253 -11.76095 -11.37455 -11.34644 -10.95971 -10.54556 -10.30366 -9.90753 -9.82082 -8.56198 -8.42972 -6.10572 0.54734 0.60270 1.05138 1.37872 1.48715 1.54574 1.83263 2.10539 2.21298 2.86040 3.18307 3.32521 3.55003 3.74082 4.07283 4.09176 4.16568 4.34051 4.48321 4.50533 4.52414 4.58144 4.62178 4.74793 4.80042 4.95552 5.08266 5.11857 5.18581 5.21729 5.32572 5.38078 5.41035 5.46568 5.60636 5.70944 5.72746 5.85585 6.02277 6.06113 6.21723 7.00871 7.06479 7.54292 7.82304 8.80063 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054725 B = 0.002223 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.528124 B =12595.367005 C =12838.636626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.179 4.179 5 C 0.168 3.832 6 N -0.722 5.722 7 C 0.695 3.305 8 O -0.623 6.623 9 N -0.662 5.662 10 C 0.081 3.919 11 C -0.080 4.080 12 C -0.220 4.220 13 C 0.106 3.894 14 O -0.232 6.232 15 C -0.413 4.413 16 H 0.107 0.893 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.190 4.190 24 C -0.074 4.074 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.423 0.577 36 H 0.160 0.840 37 H 0.134 0.866 38 H 0.272 0.728 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -27.996 -3.416 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.147 4.147 4 C -0.197 4.197 5 C 0.045 3.955 6 N -0.379 5.379 7 C 0.395 3.605 8 O -0.503 6.503 9 N -0.311 5.311 10 C -0.014 4.014 11 C -0.100 4.100 12 C -0.239 4.239 13 C 0.055 3.945 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.179 1.179 23 C -0.210 4.210 24 C -0.094 4.094 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.261 0.739 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.634 -27.095 -4.390 29.090 hybrid contribution 0.061 0.395 0.835 0.926 sum -9.573 -26.699 -3.555 28.585 Atomic orbital electron populations 1.21719 0.94719 1.02266 1.01973 1.20708 0.96425 0.93127 1.03244 1.23156 0.95335 0.98215 0.98035 1.22764 1.00271 0.95095 1.01596 1.20182 1.00303 0.91157 0.83868 1.44910 1.64384 1.10532 1.18091 1.16180 0.79291 0.82438 0.82572 1.90918 1.49508 1.63842 1.46007 1.42076 1.58097 1.14476 1.16491 1.17142 1.05769 0.84317 0.94123 1.20810 0.97424 0.95914 0.95847 1.21120 1.08839 0.94269 0.99695 1.19860 0.94407 0.85684 0.94523 1.83962 1.70723 1.24851 1.34374 1.21843 1.39111 1.01257 0.86693 0.87577 1.26644 0.96844 0.94155 1.04699 1.70208 1.44182 1.05335 1.36402 0.84615 0.78925 0.78044 0.74412 1.18143 1.19968 1.17855 1.20258 1.08657 0.97686 0.94421 1.20862 0.98554 0.90441 0.99587 0.92721 0.91675 0.92827 0.90280 0.90668 0.87270 0.85108 0.92377 0.92006 0.74834 0.73910 0.82268 0.84877 0.91953 0.87142 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.38 16 2 C -0.10 -0.73 6.38 29.84 0.19 -0.54 16 3 C -0.13 -1.31 9.12 25.64 0.23 -1.08 16 4 C -0.18 -1.95 9.24 25.64 0.24 -1.72 16 5 C 0.17 2.90 6.11 85.63 0.52 3.42 16 6 N -0.72 -12.76 5.55 -482.29 -2.68 -15.43 16 7 C 0.69 19.07 8.41 179.05 1.51 20.58 16 8 O -0.62 -23.55 13.78 -3.98 -0.05 -23.60 16 9 N -0.66 -16.35 5.34 -317.04 -1.69 -18.05 16 10 C 0.08 2.77 6.30 38.16 0.24 3.01 16 11 C -0.08 -2.66 9.96 22.37 0.22 -2.44 16 12 C -0.22 -9.42 9.16 22.37 0.20 -9.21 16 13 C 0.11 5.45 6.65 22.59 0.15 5.60 16 14 O -0.23 -14.30 9.76 -23.01 -0.22 -14.52 16 15 C -0.41 -24.12 9.48 67.91 0.64 -23.48 16 16 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 18 N -0.92 -57.58 13.67 21.61 0.30 -57.29 16 19 Si 1.02 42.86 29.55 68.60 2.03 44.89 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 23 C -0.19 -8.99 9.99 22.37 0.22 -8.76 16 24 C -0.07 -3.03 8.69 22.38 0.19 -2.83 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.46 7.79 -2.38 -0.02 0.45 16 30 H 0.11 1.19 7.84 -2.90 -0.02 1.17 16 31 H 0.13 1.04 7.84 -2.91 -0.02 1.01 16 32 H 0.06 1.14 7.79 -2.39 -0.02 1.13 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.41 4.22 8.48 -92.71 -0.79 3.44 16 35 H 0.42 6.46 8.84 -92.71 -0.82 5.64 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.13 5.59 5.63 -2.91 -0.02 5.57 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 40 H 0.13 5.36 6.23 -2.91 -0.02 5.34 16 Total: -1.00 -78.91 344.62 2.89 -76.02 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.53 Total: 26.86 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.75 Total: -18.88 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -4.08 Total: -90.77 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.28 Total: -38.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -78.91 2.89 -76.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347961359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.030 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds