Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 H 1.09000 * 109.47239 * 55.00584 * 3 2 1 5 5 N 1.46497 * 109.47372 * 295.00148 * 3 2 1 6 6 C 1.34776 * 119.99851 * 85.00258 * 5 3 2 7 7 O 1.21586 * 120.00156 * 359.72220 * 6 5 3 8 8 C 1.47640 * 119.99644 * 179.97438 * 6 5 3 9 9 C 1.40014 * 119.90100 * 359.45115 * 8 6 5 10 10 C 1.36316 * 120.11005 * 179.71377 * 9 8 6 11 11 C 1.40892 * 119.88700 * 0.56223 * 10 9 8 12 12 C 1.41107 * 120.09725 * 179.69700 * 11 10 9 13 13 H 1.08007 * 119.99791 * 204.64757 * 12 11 10 14 14 C 1.40224 * 120.00683 * 24.64675 * 12 11 10 15 15 N 1.30646 * 119.99867 * 17.86346 * 14 12 11 16 16 Si 1.86804 * 120.00261 * 197.86484 * 14 12 11 17 17 H 1.48505 * 109.46777 * 60.00229 * 16 14 12 18 18 H 1.48498 * 109.46828 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47116 * 299.99935 * 16 14 12 20 20 C 1.40884 * 119.79821 * 359.71099 * 11 10 9 21 21 C 1.36316 * 119.89084 * 0.02562 * 20 11 10 22 22 C 1.50707 * 109.46749 * 175.00091 * 3 2 1 23 23 O 1.21286 * 119.99573 * 120.00417 * 22 3 2 24 24 N 1.34771 * 120.00038 * 300.00357 * 22 3 2 25 25 C 1.46506 * 119.99941 * 180.02562 * 24 22 3 26 26 H 1.08996 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47269 * 299.99945 * 1 2 3 28 28 H 1.08999 * 109.47431 * 59.99578 * 1 2 3 29 29 H 1.09003 * 109.46423 * 240.00400 * 2 1 3 30 30 H 1.08997 * 109.47185 * 120.00904 * 2 1 3 31 31 H 0.97005 * 120.00189 * 265.00060 * 5 3 2 32 32 H 1.07998 * 119.93904 * 359.97438 * 9 8 6 33 33 H 1.07995 * 120.05471 * 180.25161 * 10 9 8 34 34 H 0.97003 * 120.00413 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.05509 * 179.97438 * 20 11 10 36 36 H 1.07999 * 119.95180 * 179.97438 * 21 20 11 37 37 H 0.97002 * 120.00111 * 359.97438 * 24 22 3 38 38 H 1.08996 * 109.46698 * 59.99889 * 25 24 22 39 39 H 1.08995 * 109.47233 * 179.97438 * 25 24 22 40 40 H 1.09000 * 109.46813 * 299.99794 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3432 2.6279 -0.4335 8 6 0.0448 3.3251 -2.6281 9 6 0.9451 3.3714 -3.6994 10 6 0.5870 3.9752 -4.8680 11 6 -0.6871 4.5636 -4.9926 12 6 -1.0600 5.1953 -6.1980 13 1 -1.8181 5.9646 -6.1924 14 6 -0.4464 4.8244 -7.4031 15 7 0.1955 3.6896 -7.4871 16 14 -0.5466 5.9530 -8.8883 17 1 0.0728 7.2617 -8.5582 18 1 0.1782 5.3363 -10.0283 19 1 -1.9699 6.1583 -9.2588 20 6 -1.5875 4.5195 -3.9099 21 6 -1.2224 3.9088 -2.7472 22 6 3.5420 1.4442 0.1238 23 8 4.2216 1.9435 -0.7478 24 7 4.1298 0.8909 1.2030 25 6 5.5898 0.8931 1.3236 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 2.2719 2.1232 -1.9978 32 1 1.9233 2.9244 -3.6012 33 1 1.2807 4.0068 -5.6951 34 1 0.6197 3.4328 -8.3208 35 1 -2.5650 4.9695 -4.0007 36 1 -1.9117 3.8748 -1.9164 37 1 3.5861 0.4919 1.9003 38 1 5.9528 1.9209 1.3239 39 1 5.8782 0.4061 2.2551 40 1 6.0247 0.3544 0.4818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525601046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -65.157649 kcal Electronic energy + Delta-G solvation = -22657.740896 eV Core-core repulsion = 19243.645055 eV Total energy + Delta-G solvation = -3414.095841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30580 -38.82450 -37.15697 -34.99513 -34.84599 -33.84396 -32.08675 -30.01832 -29.40931 -28.41177 -26.25906 -25.19803 -22.33401 -21.69762 -20.94835 -20.29233 -19.63992 -17.97448 -17.48029 -16.52652 -16.11478 -15.67599 -15.43200 -15.07987 -14.70352 -14.07859 -13.93458 -13.88719 -13.19189 -13.12972 -13.01618 -12.67301 -12.53329 -12.26973 -12.03702 -11.94550 -11.87101 -11.40942 -11.26422 -11.23618 -10.96457 -10.79001 -10.58439 -10.03828 -9.92224 -9.52048 -9.36489 -9.31155 -8.96676 -8.59778 -7.68162 -7.51519 -7.00662 -4.57597 2.25390 2.47741 2.89635 2.94918 2.96624 3.00780 3.07867 3.75923 3.82054 3.88876 4.51247 4.58033 4.94012 5.00548 5.09987 5.25898 5.34209 5.54149 5.60650 5.61851 5.84669 6.03186 6.05821 6.13061 6.15829 6.28122 6.34420 6.64897 6.80064 6.85199 6.86772 7.06988 7.16774 7.25140 7.46838 7.68642 7.83232 7.89366 8.01409 8.10129 8.26274 8.43296 8.65935 8.78653 9.06779 9.91234 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.003533 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.395247 B = 7923.384513 C = 8661.616847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.132 3.868 4 H 0.111 0.889 5 N -0.724 5.724 6 C 0.577 3.423 7 O -0.571 6.571 8 C -0.285 4.285 9 C -0.061 4.061 10 C -0.178 4.178 11 C 0.130 3.870 12 C -0.443 4.443 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.914 3.086 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.240 4.240 21 C -0.020 4.020 22 C 0.510 3.490 23 O -0.530 6.530 24 N -0.735 5.735 25 C 0.088 3.912 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.407 0.593 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.403 0.597 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -6.873 11.288 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.022 3.978 4 H 0.128 0.872 5 N -0.379 5.379 6 C 0.372 3.628 7 O -0.453 6.453 8 C -0.289 4.289 9 C -0.080 4.080 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.471 4.471 13 H 0.102 0.898 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.260 4.260 21 C -0.040 4.040 22 C 0.295 3.705 23 O -0.405 6.405 24 N -0.388 5.388 25 C -0.056 4.056 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.244 0.756 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.136 -6.692 11.123 14.813 hybrid contribution 0.213 0.137 -0.713 0.757 sum 7.350 -6.555 10.410 14.330 Atomic orbital electron populations 1.21804 0.93630 1.00571 1.04149 1.21911 0.98335 0.94158 1.02101 1.20706 0.89917 0.95652 0.91516 0.87162 1.45715 1.18072 1.59262 1.14882 1.18519 0.79792 0.76246 0.88223 1.90630 1.51625 1.61695 1.41390 1.18843 0.98719 1.17047 0.94303 1.20532 0.96447 0.97639 0.93397 1.20976 0.97247 1.04730 0.96791 1.17783 0.90294 0.87425 0.91866 1.19822 1.18359 1.17669 0.91213 0.89753 1.26102 0.92810 0.94632 1.01169 1.69738 1.23399 1.17877 1.28352 0.86260 0.79792 0.80998 0.79204 1.18475 1.20058 1.18681 1.20703 0.99493 1.10235 0.95555 1.20340 0.93819 0.93684 0.96123 1.20911 0.90711 0.77257 0.81599 1.90720 1.65393 1.44420 1.39963 1.45750 1.08226 1.61242 1.23532 1.21540 0.79768 1.02417 1.01919 0.93581 0.92022 0.91256 0.91411 0.91484 0.75555 0.89156 0.86221 0.90161 0.88420 0.88090 0.76292 0.92175 0.90643 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.51 37.16 0.32 -1.71 16 2 C -0.13 -1.50 5.55 -26.73 -0.15 -1.65 16 3 C 0.13 1.85 2.67 -69.08 -0.18 1.66 16 4 H 0.11 1.56 7.58 -51.93 -0.39 1.17 16 5 N -0.72 -12.83 4.85 -55.94 -0.27 -13.10 16 6 C 0.58 12.07 6.34 -12.42 -0.08 11.99 16 7 O -0.57 -12.55 13.44 5.29 0.07 -12.48 16 8 C -0.28 -6.58 5.89 -104.72 -0.62 -7.20 16 9 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 10 C -0.18 -4.49 8.64 -39.27 -0.34 -4.83 16 11 C 0.13 3.35 5.58 -106.80 -0.60 2.75 16 12 C -0.44 -11.16 9.04 -37.75 -0.34 -11.50 16 13 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 14 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 15 N -0.77 -18.77 10.95 55.56 0.61 -18.17 16 16 Si 0.91 17.53 29.60 -169.99 -5.03 12.50 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 C -0.24 -5.86 9.73 -39.27 -0.38 -6.25 16 21 C -0.02 -0.48 9.52 -39.60 -0.38 -0.86 16 22 C 0.51 6.84 7.22 -10.98 -0.08 6.76 16 23 O -0.53 -9.16 15.84 5.55 0.09 -9.07 16 24 N -0.73 -6.67 5.57 -67.07 -0.37 -7.05 16 25 C 0.09 0.67 10.70 59.85 0.64 1.31 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 28 H 0.07 1.22 5.64 -51.93 -0.29 0.93 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.57 7.43 -51.93 -0.39 0.19 16 31 H 0.41 7.33 5.79 -40.82 -0.24 7.09 16 32 H 0.09 1.88 6.37 -52.49 -0.33 1.54 16 33 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 34 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 37 H 0.40 2.44 8.19 -40.82 -0.33 2.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -30.01 333.17 -7.73 -37.74 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.19 Total: 14.24 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.65 Total: -9.63 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.04 Total: -38.31 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.16 Total: -21.55 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.01 -7.73 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525601046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.420 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds