Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 H 1.09000 * 109.47239 * 55.00584 * 3 2 1 5 5 N 1.46497 * 109.47372 * 295.00148 * 3 2 1 6 6 C 1.34776 * 119.99851 * 85.00258 * 5 3 2 7 7 O 1.21586 * 120.00156 * 359.72220 * 6 5 3 8 8 C 1.47640 * 119.99644 * 179.97438 * 6 5 3 9 9 C 1.40014 * 119.90100 * 359.45115 * 8 6 5 10 10 C 1.36316 * 120.11005 * 179.71377 * 9 8 6 11 11 C 1.40892 * 119.88700 * 0.56223 * 10 9 8 12 12 C 1.41107 * 120.09725 * 179.69700 * 11 10 9 13 13 H 1.08007 * 119.99791 * 204.64757 * 12 11 10 14 14 C 1.40224 * 120.00683 * 24.64675 * 12 11 10 15 15 N 1.30646 * 119.99867 * 17.86346 * 14 12 11 16 16 Si 1.86804 * 120.00261 * 197.86484 * 14 12 11 17 17 H 1.48505 * 109.46777 * 60.00229 * 16 14 12 18 18 H 1.48498 * 109.46828 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47116 * 299.99935 * 16 14 12 20 20 C 1.40884 * 119.79821 * 359.71099 * 11 10 9 21 21 C 1.36316 * 119.89084 * 0.02562 * 20 11 10 22 22 C 1.50707 * 109.46749 * 175.00091 * 3 2 1 23 23 O 1.21286 * 119.99573 * 120.00417 * 22 3 2 24 24 N 1.34771 * 120.00038 * 300.00357 * 22 3 2 25 25 C 1.46506 * 119.99941 * 180.02562 * 24 22 3 26 26 H 1.08996 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47269 * 299.99945 * 1 2 3 28 28 H 1.08999 * 109.47431 * 59.99578 * 1 2 3 29 29 H 1.09003 * 109.46423 * 240.00400 * 2 1 3 30 30 H 1.08997 * 109.47185 * 120.00904 * 2 1 3 31 31 H 0.97005 * 120.00189 * 265.00060 * 5 3 2 32 32 H 1.07998 * 119.93904 * 359.97438 * 9 8 6 33 33 H 1.07995 * 120.05471 * 180.25161 * 10 9 8 34 34 H 0.97003 * 120.00413 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.05509 * 179.97438 * 20 11 10 36 36 H 1.07999 * 119.95180 * 179.97438 * 21 20 11 37 37 H 0.97002 * 120.00111 * 359.97438 * 24 22 3 38 38 H 1.08996 * 109.46698 * 59.99889 * 25 24 22 39 39 H 1.08995 * 109.47233 * 179.97438 * 25 24 22 40 40 H 1.09000 * 109.46813 * 299.99794 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3432 2.6279 -0.4335 8 6 0.0448 3.3251 -2.6281 9 6 0.9451 3.3714 -3.6994 10 6 0.5870 3.9752 -4.8680 11 6 -0.6871 4.5636 -4.9926 12 6 -1.0600 5.1953 -6.1980 13 1 -1.8181 5.9646 -6.1924 14 6 -0.4464 4.8244 -7.4031 15 7 0.1955 3.6896 -7.4871 16 14 -0.5466 5.9530 -8.8883 17 1 0.0728 7.2617 -8.5582 18 1 0.1782 5.3363 -10.0283 19 1 -1.9699 6.1583 -9.2588 20 6 -1.5875 4.5195 -3.9099 21 6 -1.2224 3.9088 -2.7472 22 6 3.5420 1.4442 0.1238 23 8 4.2216 1.9435 -0.7478 24 7 4.1298 0.8909 1.2030 25 6 5.5898 0.8931 1.3236 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 2.2719 2.1232 -1.9978 32 1 1.9233 2.9244 -3.6012 33 1 1.2807 4.0068 -5.6951 34 1 0.6197 3.4328 -8.3208 35 1 -2.5650 4.9695 -4.0007 36 1 -1.9117 3.8748 -1.9164 37 1 3.5861 0.4919 1.9003 38 1 5.9528 1.9209 1.3239 39 1 5.8782 0.4061 2.2551 40 1 6.0247 0.3544 0.4818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525601046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = -85.286425 kcal Electronic energy + Delta-G solvation = -22658.613745 eV Core-core repulsion = 19243.645055 eV Total energy + Delta-G solvation = -3414.968690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54832 -40.30654 -38.92370 -36.33093 -35.79126 -35.65695 -33.47445 -31.75674 -31.29553 -29.48528 -27.78413 -26.40837 -23.85248 -22.96590 -22.77506 -21.47109 -21.17446 -19.39061 -19.23992 -17.77803 -17.52148 -17.10702 -16.73640 -16.34373 -15.89779 -15.74486 -15.46059 -15.17991 -14.83183 -14.53148 -14.25963 -14.08811 -13.83577 -13.71229 -13.34501 -13.20737 -13.10721 -12.98322 -12.85373 -12.66426 -12.43055 -12.36130 -11.85878 -11.77733 -11.37428 -11.11624 -11.05231 -10.67038 -10.22140 -10.02277 -9.57872 -9.41351 -8.79325 -6.48548 0.44703 1.15092 1.38070 1.42541 1.44879 1.51910 1.90632 2.12983 2.18402 2.52319 2.79500 3.58601 3.68780 3.90070 4.02756 4.22570 4.30145 4.40663 4.45804 4.48070 4.60211 4.63436 4.84264 4.92590 4.95868 4.99186 5.02280 5.15562 5.16103 5.29379 5.34157 5.47820 5.51415 5.58894 5.82083 5.94130 5.99582 6.22149 6.41528 6.53810 6.64846 6.76768 6.88654 7.10364 7.42776 8.15757 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.003533 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.395247 B = 7923.384513 C = 8661.616847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.127 3.873 4 H 0.112 0.888 5 N -0.718 5.718 6 C 0.580 3.420 7 O -0.583 6.583 8 C -0.294 4.294 9 C -0.057 4.057 10 C -0.199 4.199 11 C 0.102 3.898 12 C -0.474 4.474 13 H 0.088 0.912 14 C 0.036 3.964 15 N -0.799 5.799 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.256 1.256 20 C -0.253 4.253 21 C -0.028 4.028 22 C 0.511 3.489 23 O -0.575 6.575 24 N -0.713 5.713 25 C 0.083 3.917 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.405 0.595 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.297 0.703 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.421 0.579 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -7.880 12.389 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.130 0.870 5 N -0.371 5.371 6 C 0.374 3.626 7 O -0.466 6.466 8 C -0.298 4.298 9 C -0.076 4.076 10 C -0.218 4.218 11 C 0.099 3.901 12 C -0.501 4.501 13 H 0.106 0.894 14 C -0.183 4.183 15 N -0.423 5.423 16 Si 0.808 3.192 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.180 1.180 20 C -0.272 4.272 21 C -0.047 4.047 22 C 0.297 3.703 23 O -0.454 6.454 24 N -0.365 5.365 25 C -0.060 4.060 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.242 0.758 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.127 -7.749 12.298 16.654 hybrid contribution -0.049 0.348 -0.902 0.969 sum 8.078 -7.401 11.396 15.808 Atomic orbital electron populations 1.21737 0.95113 1.01186 1.01842 1.21899 0.96779 0.92814 1.04177 1.20973 0.90868 0.96707 0.89570 0.86988 1.45622 1.16735 1.58443 1.16306 1.18153 0.80756 0.76440 0.87244 1.90614 1.52257 1.62293 1.41472 1.19186 0.98549 1.16682 0.95418 1.20705 0.97320 0.96867 0.92756 1.20982 0.97254 1.06274 0.97325 1.18120 0.90898 0.88239 0.92813 1.20110 1.19601 1.18402 0.92037 0.89440 1.26968 0.91850 0.95773 1.03667 1.69771 1.23644 1.19166 1.29689 0.85142 0.80049 0.78580 0.75398 1.18302 1.18860 1.18019 1.20874 0.99892 1.10759 0.95716 1.20505 0.94387 0.93630 0.96151 1.20754 0.90086 0.77315 0.82195 1.90710 1.65997 1.46807 1.41891 1.45622 1.09241 1.59320 1.22348 1.21736 0.78340 1.02152 1.03803 0.91538 0.92458 0.95332 0.91670 0.86965 0.75770 0.87156 0.87220 0.89227 0.87497 0.87265 0.74128 0.93360 0.86433 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.51 71.98 0.61 -3.14 16 2 C -0.12 -2.51 5.55 30.59 0.17 -2.34 16 3 C 0.13 3.37 2.67 44.25 0.12 3.49 16 4 H 0.11 2.97 7.58 -2.39 -0.02 2.96 16 5 N -0.72 -25.19 4.85 -449.16 -2.18 -27.37 16 6 C 0.58 24.38 6.34 86.73 0.55 24.93 16 7 O -0.58 -25.59 13.44 -3.99 -0.05 -25.65 16 8 C -0.29 -13.84 5.89 -19.93 -0.12 -13.96 16 9 C -0.06 -2.72 9.47 22.25 0.21 -2.51 16 10 C -0.20 -10.38 8.64 22.47 0.19 -10.18 16 11 C 0.10 5.48 5.58 -21.28 -0.12 5.36 16 12 C -0.47 -24.51 9.04 23.46 0.21 -24.29 16 13 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 14 C 0.04 1.74 5.14 85.35 0.44 2.17 16 15 N -0.80 -39.54 10.95 21.87 0.24 -39.30 16 16 Si 0.99 35.72 29.60 68.60 2.03 37.75 16 17 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 19 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 20 C -0.25 -12.72 9.73 22.47 0.22 -12.51 16 21 C -0.03 -1.33 9.52 22.25 0.21 -1.12 16 22 C 0.51 12.81 7.22 87.66 0.63 13.44 16 23 O -0.57 -19.51 15.84 -3.05 -0.05 -19.56 16 24 N -0.71 -10.73 5.57 -484.51 -2.70 -13.43 16 25 C 0.08 1.04 10.70 127.77 1.37 2.40 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.55 7.84 -2.39 -0.02 1.53 16 28 H 0.03 0.98 5.64 -2.39 -0.01 0.97 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.40 7.43 -2.39 -0.02 1.38 16 31 H 0.40 14.58 5.79 -92.70 -0.54 14.05 16 32 H 0.11 4.65 6.37 -2.91 -0.02 4.64 16 33 H 0.11 5.85 6.16 -2.91 -0.02 5.83 16 34 H 0.30 13.11 8.29 -92.71 -0.77 12.34 16 35 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.11 5.00 7.63 -2.91 -0.02 4.98 16 37 H 0.42 3.30 8.19 -92.71 -0.76 2.54 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -67.31 333.17 1.77 -65.54 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.21 Total: 40.27 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.70 Total: -18.25 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -4.64 Total: -80.10 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.10 Total: -45.21 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -67.31 1.77 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525601046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.749 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds