Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 115.56386 * 2 1 4 4 C 1.52994 * 117.50026 * 214.30264 * 2 1 3 5 5 C 1.53001 * 117.49795 * 145.67831 * 2 1 3 6 6 H 1.09003 * 117.51962 * 214.97453 * 5 2 1 7 7 C 1.53001 * 117.49806 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.47273 * 185.01187 * 7 5 2 9 9 C 1.34778 * 120.00310 * 180.02562 * 8 7 5 10 10 O 1.21591 * 119.99595 * 359.97438 * 9 8 7 11 11 N 1.34768 * 119.99788 * 179.97438 * 9 8 7 12 12 C 1.40026 * 119.99598 * 175.49050 * 11 9 8 13 13 C 1.38910 * 120.00171 * 35.12799 * 12 11 9 14 14 C 1.38013 * 119.99703 * 179.97438 * 13 12 11 15 15 C 1.38905 * 120.00465 * 0.02562 * 14 13 12 16 16 O 1.35778 * 119.99872 * 179.97438 * 15 14 13 17 17 C 1.34807 * 117.00210 * 5.34123 * 16 15 14 18 18 H 1.08000 * 120.00417 * 354.96190 * 17 16 15 19 19 C 1.38636 * 120.00068 * 174.68724 * 17 16 15 20 20 N 1.31570 * 119.99943 * 0.28252 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 180.27474 * 19 17 16 22 22 H 1.48503 * 109.47144 * 90.00328 * 21 19 17 23 23 H 1.48499 * 109.47321 * 210.00131 * 21 19 17 24 24 H 1.48500 * 109.47529 * 330.00458 * 21 19 17 25 25 C 1.38901 * 120.00031 * 0.23695 * 15 14 13 26 26 C 1.38019 * 120.00128 * 359.48595 * 25 15 14 27 27 H 1.08999 * 109.46933 * 274.32100 * 1 2 3 28 28 H 1.09000 * 109.46897 * 34.31632 * 1 2 3 29 29 H 1.08997 * 109.47087 * 154.32033 * 1 2 3 30 30 H 1.09000 * 117.50202 * 145.02687 * 4 2 1 31 31 H 1.08996 * 117.51946 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47155 * 65.01012 * 7 5 2 33 33 H 1.08999 * 109.47386 * 305.01282 * 7 5 2 34 34 H 0.97000 * 119.99787 * 359.97438 * 8 7 5 35 35 H 0.96996 * 120.00565 * 355.49378 * 11 9 8 36 36 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.99865 * 179.97438 * 14 13 12 38 38 H 0.97001 * 120.00099 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.00160 * 179.72656 * 25 15 14 40 40 H 1.07996 * 119.99943 * 180.25887 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7648 5 6 2.2365 -1.1209 0.7652 6 1 3.1716 -0.8753 1.2685 7 6 1.3588 -2.1562 1.4713 8 7 2.2056 -3.0704 2.2417 9 6 1.6466 -4.0715 2.9500 10 8 0.4392 -4.2156 2.9500 11 7 2.4257 -4.9127 3.6582 12 6 1.8410 -5.8935 4.4687 13 6 0.6624 -6.5115 4.0706 14 6 0.0865 -7.4786 4.8693 15 6 0.6850 -7.8335 6.0715 16 8 0.1180 -8.7845 6.8574 17 6 -0.9618 -9.4228 6.3634 18 1 -1.3869 -9.1141 5.4198 19 6 -1.5231 -10.4793 7.0639 20 7 -1.0054 -10.8553 8.2136 21 14 -3.0146 -11.3687 6.3757 22 1 -2.5670 -12.4979 5.5214 23 1 -3.8393 -11.8912 7.4947 24 1 -3.8233 -10.4241 5.5639 25 6 1.8606 -7.2116 6.4722 26 6 2.4398 -6.2486 5.6709 27 1 -0.3633 0.0774 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9261 -0.4453 30 1 3.1716 -0.8753 -1.2680 31 1 1.6116 -1.8590 -1.2677 32 1 0.7951 -2.7215 0.7292 33 1 0.6670 -1.6485 2.1435 34 1 3.1688 -2.9556 2.2413 35 1 3.3915 -4.8388 3.6065 36 1 0.1968 -6.2354 3.1361 37 1 -0.8301 -7.9588 4.5600 38 1 -1.3980 -11.5948 8.7035 39 1 2.3236 -7.4844 7.4090 40 1 3.3560 -5.7681 5.9805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043557924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -4.239192 kcal Electronic energy + Delta-G solvation = -21745.072423 eV Core-core repulsion = 18333.618205 eV Total energy + Delta-G solvation = -3411.454218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31516 -38.91988 -38.35867 -36.54748 -34.30267 -33.82376 -32.11483 -30.13388 -29.10516 -28.18279 -26.52839 -25.14178 -22.38483 -21.96525 -21.55989 -20.61920 -19.97035 -18.38348 -17.79121 -17.29956 -16.71622 -16.07581 -15.55850 -14.77220 -14.50065 -14.45177 -14.22480 -13.91716 -13.55508 -13.50720 -13.49151 -13.25068 -12.81213 -12.59811 -12.46407 -11.91467 -11.69537 -11.56250 -11.50145 -11.46039 -10.98001 -10.71682 -10.42652 -10.39661 -10.35604 -9.88615 -9.63390 -9.13655 -9.09700 -8.63354 -8.13842 -6.86106 -6.39615 -3.97023 2.20160 2.30780 2.71416 3.16712 3.18514 3.23409 3.31127 3.41475 4.02227 4.21776 4.25185 4.45337 4.51263 4.64173 4.85994 4.94471 5.14619 5.25351 5.31786 5.42219 5.42874 5.50422 5.56387 5.67691 5.73244 5.78394 5.83091 5.94165 6.18948 6.24395 6.33397 6.44373 6.73419 6.79929 7.02176 7.16611 7.25602 7.39920 7.50474 7.85345 8.05583 8.10102 8.72480 9.06462 9.76701 10.78540 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.002656 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.913744 B =10538.216107 C =11297.068803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.142 4.142 3 H 0.106 0.894 4 C -0.174 4.174 5 C -0.167 4.167 6 H 0.109 0.891 7 C 0.172 3.828 8 N -0.747 5.747 9 C 0.698 3.302 10 O -0.576 6.576 11 N -0.675 5.675 12 C 0.053 3.947 13 C -0.064 4.064 14 C -0.220 4.220 15 C 0.145 3.855 16 O -0.178 6.178 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.178 4.178 26 C -0.095 4.095 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 18.325 -15.038 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 H 0.124 0.876 4 C -0.211 4.211 5 C -0.186 4.186 6 H 0.127 0.873 7 C 0.047 3.953 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.452 6.452 11 N -0.322 5.322 12 C -0.040 4.040 13 C -0.084 4.084 14 C -0.239 4.239 15 C 0.091 3.909 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.198 4.198 26 C -0.116 4.116 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.525 17.961 -14.641 24.363 hybrid contribution 0.317 -0.252 -0.410 0.576 sum 7.842 17.709 -15.051 24.528 Atomic orbital electron populations 1.21404 0.92499 1.02298 1.02380 1.22370 0.95747 0.94257 1.03744 0.87601 1.23239 1.02695 1.01646 0.93499 1.22544 1.01482 1.00204 0.94360 0.87268 1.20657 0.91687 0.88821 0.94085 1.45074 1.10056 1.32167 1.53084 1.15953 0.85599 0.79426 0.79132 1.90936 1.12469 1.74535 1.67303 1.42281 1.08720 1.33528 1.47711 1.17045 0.98594 0.95584 0.92779 1.20886 0.94512 0.93491 0.99547 1.21113 1.03353 1.02565 0.96915 1.19407 0.91676 0.89936 0.89882 1.83971 1.41205 1.43578 1.39429 1.21332 1.04601 1.13505 1.07131 0.89052 1.25274 0.99247 0.96281 0.95764 1.70046 1.39993 1.26836 1.13092 0.85718 0.79869 0.79492 0.78419 1.19923 1.20312 1.19155 1.19969 0.96560 1.01489 1.01782 1.20327 1.00080 0.98856 0.92319 0.91749 0.92012 0.92149 0.88711 0.88407 0.91473 0.91161 0.77227 0.76897 0.85582 0.85250 0.92106 0.86094 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.14 -0.90 6.41 -90.62 -0.58 -1.48 16 3 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.17 -1.08 9.82 -26.73 -0.26 -1.34 16 5 C -0.17 -1.14 5.85 -90.62 -0.53 -1.67 16 6 H 0.11 0.62 8.04 -51.93 -0.42 0.21 16 7 C 0.17 1.66 5.04 -4.04 -0.02 1.64 16 8 N -0.75 -7.72 5.56 -65.22 -0.36 -8.09 16 9 C 0.70 10.51 8.41 -86.92 -0.73 9.78 16 10 O -0.58 -11.28 13.78 5.29 0.07 -11.20 16 11 N -0.68 -9.55 5.34 -14.18 -0.08 -9.62 16 12 C 0.05 0.97 6.30 -83.61 -0.53 0.44 16 13 C -0.06 -1.34 8.69 -39.42 -0.34 -1.69 16 14 C -0.22 -5.10 9.16 -39.42 -0.36 -5.46 16 15 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 16 O -0.18 -5.18 9.75 0.03 0.00 -5.18 16 17 C -0.39 -11.13 9.48 30.88 0.29 -10.84 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.68 13.67 55.48 0.76 -24.93 16 21 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.18 -3.78 9.99 -39.42 -0.39 -4.17 16 26 C -0.10 -1.70 9.96 -39.41 -0.39 -2.09 16 27 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.65 7.94 -51.93 -0.41 0.23 16 32 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 33 H 0.07 0.77 7.77 -51.93 -0.40 0.37 16 34 H 0.39 2.78 8.42 -40.82 -0.34 2.43 16 35 H 0.40 3.99 8.84 -40.82 -0.36 3.63 16 36 H 0.13 2.65 6.22 -52.49 -0.33 2.32 16 37 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -34.12 339.92 -8.68 -42.80 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.31 Total: 8.17 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.86 Total: -13.07 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.32 Total: -42.64 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.07 Total: -16.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.12 -8.68 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043557924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.561 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds