Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 115.56386 * 2 1 4 4 C 1.52994 * 117.50026 * 214.30264 * 2 1 3 5 5 C 1.53001 * 117.49795 * 145.67831 * 2 1 3 6 6 H 1.09003 * 117.51962 * 214.97453 * 5 2 1 7 7 C 1.53001 * 117.49806 * 0.02562 * 5 2 1 8 8 N 1.46503 * 109.47273 * 185.01187 * 7 5 2 9 9 C 1.34778 * 120.00310 * 180.02562 * 8 7 5 10 10 O 1.21591 * 119.99595 * 359.97438 * 9 8 7 11 11 N 1.34768 * 119.99788 * 179.97438 * 9 8 7 12 12 C 1.40026 * 119.99598 * 175.49050 * 11 9 8 13 13 C 1.38910 * 120.00171 * 35.12799 * 12 11 9 14 14 C 1.38013 * 119.99703 * 179.97438 * 13 12 11 15 15 C 1.38905 * 120.00465 * 0.02562 * 14 13 12 16 16 O 1.35778 * 119.99872 * 179.97438 * 15 14 13 17 17 C 1.34807 * 117.00210 * 5.34123 * 16 15 14 18 18 H 1.08000 * 120.00417 * 354.96190 * 17 16 15 19 19 C 1.38636 * 120.00068 * 174.68724 * 17 16 15 20 20 N 1.31570 * 119.99943 * 0.28252 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 180.27474 * 19 17 16 22 22 H 1.48503 * 109.47144 * 90.00328 * 21 19 17 23 23 H 1.48499 * 109.47321 * 210.00131 * 21 19 17 24 24 H 1.48500 * 109.47529 * 330.00458 * 21 19 17 25 25 C 1.38901 * 120.00031 * 0.23695 * 15 14 13 26 26 C 1.38019 * 120.00128 * 359.48595 * 25 15 14 27 27 H 1.08999 * 109.46933 * 274.32100 * 1 2 3 28 28 H 1.09000 * 109.46897 * 34.31632 * 1 2 3 29 29 H 1.08997 * 109.47087 * 154.32033 * 1 2 3 30 30 H 1.09000 * 117.50202 * 145.02687 * 4 2 1 31 31 H 1.08996 * 117.51946 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47155 * 65.01012 * 7 5 2 33 33 H 1.08999 * 109.47386 * 305.01282 * 7 5 2 34 34 H 0.97000 * 119.99787 * 359.97438 * 8 7 5 35 35 H 0.96996 * 120.00565 * 355.49378 * 11 9 8 36 36 H 1.07995 * 120.00332 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.99865 * 179.97438 * 14 13 12 38 38 H 0.97001 * 120.00099 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.00160 * 179.72656 * 25 15 14 40 40 H 1.07996 * 119.99943 * 180.25887 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7648 5 6 2.2365 -1.1209 0.7652 6 1 3.1716 -0.8753 1.2685 7 6 1.3588 -2.1562 1.4713 8 7 2.2056 -3.0704 2.2417 9 6 1.6466 -4.0715 2.9500 10 8 0.4392 -4.2156 2.9500 11 7 2.4257 -4.9127 3.6582 12 6 1.8410 -5.8935 4.4687 13 6 0.6624 -6.5115 4.0706 14 6 0.0865 -7.4786 4.8693 15 6 0.6850 -7.8335 6.0715 16 8 0.1180 -8.7845 6.8574 17 6 -0.9618 -9.4228 6.3634 18 1 -1.3869 -9.1141 5.4198 19 6 -1.5231 -10.4793 7.0639 20 7 -1.0054 -10.8553 8.2136 21 14 -3.0146 -11.3687 6.3757 22 1 -2.5670 -12.4979 5.5214 23 1 -3.8393 -11.8912 7.4947 24 1 -3.8233 -10.4241 5.5639 25 6 1.8606 -7.2116 6.4722 26 6 2.4398 -6.2486 5.6709 27 1 -0.3633 0.0774 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9261 -0.4453 30 1 3.1716 -0.8753 -1.2680 31 1 1.6116 -1.8590 -1.2677 32 1 0.7951 -2.7215 0.7292 33 1 0.6670 -1.6485 2.1435 34 1 3.1688 -2.9556 2.2413 35 1 3.3915 -4.8388 3.6065 36 1 0.1968 -6.2354 3.1361 37 1 -0.8301 -7.9588 4.5600 38 1 -1.3980 -11.5948 8.7035 39 1 2.3236 -7.4844 7.4090 40 1 3.3560 -5.7681 5.9805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043557924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -27.580853 kcal Electronic energy + Delta-G solvation = -21746.084593 eV Core-core repulsion = 18333.618205 eV Total energy + Delta-G solvation = -3412.466389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62783 -40.48809 -39.20912 -38.16697 -35.47956 -35.21316 -34.11972 -31.83089 -30.02982 -29.28837 -27.72041 -27.01245 -23.97606 -23.19961 -22.47206 -21.83999 -20.78070 -20.02490 -19.33529 -18.74490 -18.16451 -17.03707 -16.76600 -16.32098 -16.13917 -15.67329 -15.50672 -15.29928 -15.17039 -14.73176 -14.57047 -14.46471 -14.06534 -13.86236 -13.56482 -13.26591 -13.19462 -13.07411 -12.68988 -12.43920 -12.41310 -12.12691 -12.12635 -11.50732 -11.33156 -11.01237 -10.95967 -10.75543 -10.54018 -10.04705 -9.81464 -8.56364 -8.45899 -6.12400 0.54616 0.61066 1.35306 1.43580 1.52352 1.60781 2.09461 2.18925 2.79466 2.84701 3.16628 3.27362 3.54007 3.66430 3.91590 3.95768 4.11654 4.15148 4.26691 4.45456 4.50313 4.59056 4.68507 4.71422 4.77830 4.92381 4.93682 4.99241 5.08315 5.13890 5.16213 5.24825 5.36955 5.43117 5.44088 5.48797 5.64114 5.72613 6.01371 6.04882 6.21393 6.98864 7.06645 7.54463 7.78807 8.76886 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.002656 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.913744 B =10538.216107 C =11297.068803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 H 0.121 0.879 4 C -0.170 4.170 5 C -0.166 4.166 6 H 0.129 0.871 7 C 0.172 3.828 8 N -0.722 5.722 9 C 0.694 3.306 10 O -0.624 6.624 11 N -0.661 5.661 12 C 0.081 3.919 13 C -0.077 4.077 14 C -0.228 4.228 15 C 0.105 3.895 16 O -0.228 6.228 17 C -0.413 4.413 18 H 0.096 0.904 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.016 2.984 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.258 1.258 25 C -0.179 4.179 26 C -0.077 4.077 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.423 0.577 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.130 0.870 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 20.600 -16.837 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 H 0.139 0.861 4 C -0.207 4.207 5 C -0.185 4.185 6 H 0.147 0.853 7 C 0.047 3.953 8 N -0.379 5.379 9 C 0.395 3.605 10 O -0.504 6.504 11 N -0.311 5.311 12 C -0.014 4.014 13 C -0.097 4.097 14 C -0.248 4.248 15 C 0.054 3.946 16 O -0.134 6.134 17 C -0.489 4.489 18 H 0.113 0.887 19 C -0.218 4.218 20 N -0.556 5.556 21 Si 0.835 3.165 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.182 1.182 25 C -0.199 4.199 26 C -0.098 4.098 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.253 0.747 35 H 0.262 0.738 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.700 20.318 -16.499 27.913 hybrid contribution -0.127 -0.638 -0.033 0.651 sum 9.573 19.680 -16.532 27.427 Atomic orbital electron populations 1.21424 0.93186 1.02316 1.01976 1.22466 0.95346 0.94916 1.03349 0.86069 1.23289 1.03220 1.01242 0.92941 1.22472 1.01719 0.99601 0.94665 0.85302 1.20674 0.92095 0.89009 0.93481 1.44875 1.11275 1.30455 1.51340 1.16169 0.84999 0.80108 0.79243 1.90924 1.14843 1.75788 1.68831 1.42055 1.10011 1.32255 1.46759 1.17157 0.96948 0.94449 0.92836 1.20938 0.95926 0.93533 0.99345 1.21089 1.03230 1.03398 0.97122 1.19934 0.93439 0.90478 0.90740 1.83932 1.42378 1.45785 1.41323 1.21758 1.05242 1.14277 1.07672 0.88653 1.26520 1.02544 0.96786 0.95996 1.70175 1.42365 1.28148 1.14940 0.84624 0.75611 0.78209 0.78007 1.18675 1.19306 1.18189 1.20320 0.95389 1.01520 1.02636 1.20751 1.01118 0.97069 0.90819 0.92554 0.90956 0.93074 0.87088 0.89217 0.92890 0.92618 0.74748 0.73826 0.85832 0.86712 0.91799 0.85226 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.19 71.98 0.66 -0.92 16 2 C -0.14 -1.43 6.41 -10.79 -0.07 -1.50 16 3 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.17 -1.65 9.82 30.59 0.30 -1.35 16 5 C -0.17 -1.77 5.85 -10.79 -0.06 -1.84 16 6 H 0.13 0.91 8.04 -2.39 -0.02 0.90 16 7 C 0.17 3.02 5.04 86.38 0.44 3.45 16 8 N -0.72 -12.77 5.56 -478.53 -2.66 -15.43 16 9 C 0.69 19.21 8.41 179.06 1.51 20.72 16 10 O -0.62 -23.96 13.78 -4.00 -0.06 -24.02 16 11 N -0.66 -16.26 5.34 -317.05 -1.69 -17.95 16 12 C 0.08 2.75 6.30 38.16 0.24 2.99 16 13 C -0.08 -3.21 8.69 22.38 0.19 -3.02 16 14 C -0.23 -11.00 9.16 22.38 0.20 -10.80 16 15 C 0.10 5.38 6.65 22.59 0.15 5.53 16 16 O -0.23 -13.97 9.75 -22.82 -0.22 -14.19 16 17 C -0.41 -24.91 9.48 67.92 0.64 -24.26 16 18 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 20 N -0.92 -57.04 13.67 21.61 0.30 -56.74 16 21 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C -0.18 -7.47 9.99 22.38 0.22 -7.24 16 26 C -0.08 -2.50 9.96 22.38 0.22 -2.28 16 27 H 0.06 0.76 7.83 -2.39 -0.02 0.74 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.69 7.90 -2.39 -0.02 0.67 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.03 7.94 -2.39 -0.02 1.02 16 32 H 0.05 1.10 7.87 -2.39 -0.02 1.08 16 33 H 0.06 1.17 7.77 -2.39 -0.02 1.15 16 34 H 0.42 4.02 8.42 -92.71 -0.78 3.24 16 35 H 0.42 6.28 8.84 -92.71 -0.82 5.46 16 36 H 0.12 5.24 6.22 -2.91 -0.02 5.22 16 37 H 0.12 5.72 5.63 -2.91 -0.02 5.70 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.13 5.13 8.06 -2.91 -0.02 5.10 16 40 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -79.72 339.92 2.29 -77.44 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.52 Total: 25.78 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 5.12 Total: -21.27 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -4.06 Total: -90.12 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.28 Total: -38.21 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -79.72 2.29 -77.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043557924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.854 kcal (2) G-P(sol) polarization free energy of solvation -79.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds