Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55940 * 2 1 4 4 C 1.53081 * 117.49448 * 214.30028 * 2 1 3 5 5 C 1.52999 * 117.50271 * 145.69349 * 2 1 3 6 6 H 1.08993 * 117.49691 * 359.97438 * 5 2 1 7 7 C 1.53001 * 117.49873 * 214.97942 * 5 2 1 8 8 N 1.46502 * 109.46984 * 175.08835 * 7 5 2 9 9 C 1.34769 * 120.00008 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99887 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.40031 * 119.99924 * 175.49133 * 11 9 8 13 13 C 1.38908 * 119.99866 * 214.84879 * 12 11 9 14 14 C 1.38014 * 119.99542 * 179.79374 * 13 12 11 15 15 C 1.38904 * 119.99931 * 0.46286 * 14 13 12 16 16 O 1.35781 * 119.99457 * 179.77122 * 15 14 13 17 17 C 1.34814 * 116.99788 * 185.36558 * 16 15 14 18 18 H 1.07997 * 120.00015 * 354.96048 * 17 16 15 19 19 C 1.38633 * 120.00266 * 174.96227 * 17 16 15 20 20 N 1.31571 * 120.00271 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99853 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47065 * 89.99941 * 21 19 17 23 23 H 1.48502 * 109.47261 * 210.00036 * 21 19 17 24 24 H 1.48506 * 109.47019 * 329.99970 * 21 19 17 25 25 C 1.38899 * 120.00258 * 359.78793 * 15 14 13 26 26 C 1.38007 * 120.00308 * 359.97438 * 25 15 14 27 27 H 1.08995 * 109.47080 * 274.30228 * 1 2 3 28 28 H 1.08992 * 109.47604 * 34.30882 * 1 2 3 29 29 H 1.09010 * 109.46868 * 154.30440 * 1 2 3 30 30 H 1.08999 * 117.51342 * 145.03773 * 4 2 1 31 31 H 1.08997 * 117.51127 * 359.97438 * 4 2 1 32 32 H 1.08997 * 109.46879 * 55.08876 * 7 5 2 33 33 H 1.09001 * 109.46741 * 295.08582 * 7 5 2 34 34 H 0.97006 * 119.99962 * 0.02562 * 8 7 5 35 35 H 0.96993 * 119.99809 * 355.48677 * 11 9 8 36 36 H 1.08002 * 120.00316 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.99909 * 180.22949 * 14 13 12 38 38 H 0.97000 * 120.00289 * 179.97438 * 20 19 17 39 39 H 1.08002 * 119.99846 * 179.97438 * 25 15 14 40 40 H 1.07993 * 120.00106 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1218 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2684 7 6 3.5491 -0.7759 1.4713 8 7 4.0097 -1.9353 2.2393 9 6 5.1536 -1.8627 2.9482 10 8 5.8035 -0.8350 2.9500 11 7 5.5777 -2.9295 3.6544 12 6 6.8122 -2.8867 4.3140 13 6 7.5893 -4.0341 4.4084 14 6 8.8079 -3.9908 5.0549 15 6 9.2528 -2.8022 5.6194 16 8 10.4496 -2.7608 6.2594 17 6 10.7721 -1.6084 6.8802 18 1 10.1291 -0.7459 6.7858 19 6 11.9292 -1.5305 7.6398 20 7 12.2443 -0.4057 8.2452 21 14 13.0419 -3.0222 7.8025 22 1 14.0519 -3.0074 6.7140 23 1 13.7308 -2.9849 9.1175 24 1 12.2275 -4.2602 7.7052 25 6 8.4733 -1.6561 5.5295 26 6 7.2570 -1.6981 4.8788 27 1 -0.3633 0.0771 1.0247 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4456 30 1 3.1719 -0.8764 -1.2684 31 1 1.6116 -1.8596 -1.2681 32 1 3.3886 0.0657 2.1450 33 1 4.3017 -0.5092 0.7294 34 1 3.4914 -2.7553 2.2376 35 1 5.0278 -3.7268 3.7057 36 1 7.2417 -4.9592 3.9728 37 1 9.4139 -4.8821 5.1251 38 1 13.0537 -0.3512 8.7770 39 1 8.8191 -0.7320 5.9688 40 1 6.6507 -0.8070 4.8093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043557928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = -2.982464 kcal Electronic energy + Delta-G solvation = -21615.263944 eV Core-core repulsion = 18203.864221 eV Total energy + Delta-G solvation = -3411.399722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36444 -39.00137 -38.36917 -36.70681 -34.39729 -33.91568 -32.26619 -30.23175 -29.59246 -28.15116 -26.33522 -24.97506 -22.53039 -21.76451 -21.38484 -21.01887 -20.26234 -18.48655 -17.75086 -17.45885 -16.77667 -15.90767 -15.41380 -15.07464 -14.67070 -14.49345 -14.08169 -13.84784 -13.76217 -13.69079 -13.54165 -13.31311 -12.71365 -12.61874 -12.37027 -12.23255 -11.84205 -11.71251 -11.68476 -11.58206 -10.92494 -10.70846 -10.49086 -10.37673 -10.22190 -9.89680 -9.65324 -9.20498 -9.13086 -8.71246 -8.22792 -6.99451 -6.36273 -4.02020 2.10260 2.19731 2.65493 3.24719 3.28239 3.30969 3.35271 3.43177 4.13443 4.27232 4.27906 4.40777 4.52919 4.56806 4.83033 4.90011 4.92120 5.15438 5.17896 5.35428 5.39684 5.48099 5.51426 5.60174 5.62737 5.69491 5.78452 5.89305 6.12533 6.15329 6.24690 6.38667 6.63122 6.69631 6.89165 7.15360 7.20955 7.36759 7.64807 7.85343 8.04309 8.08340 8.67511 8.98849 9.61234 10.71452 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.002460 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.495607 B =11378.892012 C =11817.024588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.173 4.173 5 C -0.166 4.166 6 H 0.109 0.891 7 C 0.170 3.830 8 N -0.746 5.746 9 C 0.699 3.301 10 O -0.574 6.574 11 N -0.676 5.676 12 C 0.063 3.937 13 C -0.099 4.099 14 C -0.177 4.177 15 C 0.150 3.850 16 O -0.218 6.218 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.206 4.206 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.398 0.602 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.136 0.864 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.932 -5.109 -14.602 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.164 4.164 3 H 0.126 0.874 4 C -0.210 4.210 5 C -0.185 4.185 6 H 0.127 0.873 7 C 0.046 3.954 8 N -0.403 5.403 9 C 0.399 3.601 10 O -0.450 6.450 11 N -0.324 5.324 12 C -0.030 4.030 13 C -0.119 4.119 14 C -0.197 4.197 15 C 0.097 3.903 16 O -0.123 6.123 17 C -0.463 4.463 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.087 4.087 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.228 0.772 35 H 0.232 0.768 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.001 -4.175 -14.459 25.836 hybrid contribution -0.018 -1.195 0.127 1.202 sum -21.019 -5.370 -14.332 26.000 Atomic orbital electron populations 1.21374 0.92579 1.02040 1.02051 1.22408 0.95394 0.94774 1.03806 0.87406 1.23287 1.02832 1.01331 0.93511 1.22569 0.98553 1.02974 0.94355 0.87261 1.20698 0.92857 0.87657 0.94189 1.45058 1.25357 1.17024 1.52825 1.15950 0.81141 0.84195 0.78806 1.90949 1.56782 1.29613 1.67704 1.42299 1.20644 1.16926 1.52510 1.17101 0.87214 0.95702 1.02985 1.20317 0.93733 0.96721 1.01141 1.19960 0.97288 0.96551 1.05913 1.19143 0.85574 0.93223 0.92318 1.83562 1.29905 1.38255 1.60606 1.20777 1.09393 0.88159 1.27976 0.87588 1.24470 0.96896 0.97905 0.94849 1.69658 1.25845 1.25312 1.31040 0.86170 0.80303 0.82871 0.77471 1.19938 1.20895 1.18363 1.21234 0.96049 0.99525 1.05739 1.20947 0.96197 0.97089 0.94444 0.92045 0.91956 0.92540 0.88449 0.88655 0.91163 0.91391 0.77189 0.76816 0.86648 0.86105 0.91116 0.84613 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.19 37.16 0.38 -0.25 16 2 C -0.15 -0.90 6.13 -90.58 -0.56 -1.45 16 3 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.17 -1.06 9.83 -26.68 -0.26 -1.32 16 5 C -0.17 -1.10 5.56 -90.61 -0.50 -1.60 16 6 H 0.11 0.62 8.04 -51.93 -0.42 0.20 16 7 C 0.17 1.60 5.96 -4.04 -0.02 1.58 16 8 N -0.75 -7.47 5.56 -65.23 -0.36 -7.83 16 9 C 0.70 10.26 8.41 -86.92 -0.73 9.53 16 10 O -0.57 -11.12 13.78 5.29 0.07 -11.05 16 11 N -0.68 -9.19 5.35 -14.18 -0.08 -9.27 16 12 C 0.06 1.11 6.30 -83.61 -0.53 0.58 16 13 C -0.10 -1.65 9.96 -39.42 -0.39 -2.05 16 14 C -0.18 -3.50 9.99 -39.42 -0.39 -3.89 16 15 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 16 O -0.22 -5.84 8.58 0.00 0.00 -5.84 16 17 C -0.39 -11.14 9.94 30.88 0.31 -10.83 16 18 H 0.11 3.13 5.43 -52.49 -0.28 2.85 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.87 13.96 55.48 0.77 -25.10 16 21 Si 0.91 21.93 28.62 -169.99 -4.86 17.07 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.21 -4.72 9.16 -39.42 -0.36 -5.08 16 26 C -0.07 -1.37 8.69 -39.42 -0.34 -1.71 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.26 7.90 -51.92 -0.41 -0.15 16 30 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 31 H 0.10 0.50 8.05 -51.93 -0.42 0.08 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 34 H 0.39 2.64 8.42 -40.82 -0.34 2.30 16 35 H 0.40 3.75 8.84 -40.82 -0.36 3.39 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.14 3.28 5.63 -52.49 -0.30 2.99 16 40 H 0.13 2.69 6.22 -52.49 -0.33 2.36 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -33.25 340.85 -8.44 -41.69 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.35 Total: 6.74 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.76 Total: -11.54 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.34 Total: -42.19 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.07 Total: -16.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.25 -8.44 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043557928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.705 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds