Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55940 * 2 1 4 4 C 1.53081 * 117.49448 * 214.30028 * 2 1 3 5 5 C 1.52999 * 117.50271 * 145.69349 * 2 1 3 6 6 H 1.08993 * 117.49691 * 359.97438 * 5 2 1 7 7 C 1.53001 * 117.49873 * 214.97942 * 5 2 1 8 8 N 1.46502 * 109.46984 * 175.08835 * 7 5 2 9 9 C 1.34769 * 120.00008 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99887 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.40031 * 119.99924 * 175.49133 * 11 9 8 13 13 C 1.38908 * 119.99866 * 214.84879 * 12 11 9 14 14 C 1.38014 * 119.99542 * 179.79374 * 13 12 11 15 15 C 1.38904 * 119.99931 * 0.46286 * 14 13 12 16 16 O 1.35781 * 119.99457 * 179.77122 * 15 14 13 17 17 C 1.34814 * 116.99788 * 185.36558 * 16 15 14 18 18 H 1.07997 * 120.00015 * 354.96048 * 17 16 15 19 19 C 1.38633 * 120.00266 * 174.96227 * 17 16 15 20 20 N 1.31571 * 120.00271 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99853 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47065 * 89.99941 * 21 19 17 23 23 H 1.48502 * 109.47261 * 210.00036 * 21 19 17 24 24 H 1.48506 * 109.47019 * 329.99970 * 21 19 17 25 25 C 1.38899 * 120.00258 * 359.78793 * 15 14 13 26 26 C 1.38007 * 120.00308 * 359.97438 * 25 15 14 27 27 H 1.08995 * 109.47080 * 274.30228 * 1 2 3 28 28 H 1.08992 * 109.47604 * 34.30882 * 1 2 3 29 29 H 1.09010 * 109.46868 * 154.30440 * 1 2 3 30 30 H 1.08999 * 117.51342 * 145.03773 * 4 2 1 31 31 H 1.08997 * 117.51127 * 359.97438 * 4 2 1 32 32 H 1.08997 * 109.46879 * 55.08876 * 7 5 2 33 33 H 1.09001 * 109.46741 * 295.08582 * 7 5 2 34 34 H 0.97006 * 119.99962 * 0.02562 * 8 7 5 35 35 H 0.96993 * 119.99809 * 355.48677 * 11 9 8 36 36 H 1.08002 * 120.00316 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.99909 * 180.22949 * 14 13 12 38 38 H 0.97000 * 120.00289 * 179.97438 * 20 19 17 39 39 H 1.08002 * 119.99846 * 179.97438 * 25 15 14 40 40 H 1.07993 * 120.00106 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1218 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2684 7 6 3.5491 -0.7759 1.4713 8 7 4.0097 -1.9353 2.2393 9 6 5.1536 -1.8627 2.9482 10 8 5.8035 -0.8350 2.9500 11 7 5.5777 -2.9295 3.6544 12 6 6.8122 -2.8867 4.3140 13 6 7.5893 -4.0341 4.4084 14 6 8.8079 -3.9908 5.0549 15 6 9.2528 -2.8022 5.6194 16 8 10.4496 -2.7608 6.2594 17 6 10.7721 -1.6084 6.8802 18 1 10.1291 -0.7459 6.7858 19 6 11.9292 -1.5305 7.6398 20 7 12.2443 -0.4057 8.2452 21 14 13.0419 -3.0222 7.8025 22 1 14.0519 -3.0074 6.7140 23 1 13.7308 -2.9849 9.1175 24 1 12.2275 -4.2602 7.7052 25 6 8.4733 -1.6561 5.5295 26 6 7.2570 -1.6981 4.8788 27 1 -0.3633 0.0771 1.0247 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4456 30 1 3.1719 -0.8764 -1.2684 31 1 1.6116 -1.8596 -1.2681 32 1 3.3886 0.0657 2.1450 33 1 4.3017 -0.5092 0.7294 34 1 3.4914 -2.7553 2.2376 35 1 5.0278 -3.7268 3.7057 36 1 7.2417 -4.9592 3.9728 37 1 9.4139 -4.8821 5.1251 38 1 13.0537 -0.3512 8.7770 39 1 8.8191 -0.7320 5.9688 40 1 6.6507 -0.8070 4.8093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043557928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = -25.544271 kcal Electronic energy + Delta-G solvation = -21616.242297 eV Core-core repulsion = 18203.864221 eV Total energy + Delta-G solvation = -3412.378076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66254 -40.59245 -39.14138 -38.24905 -35.52324 -35.27964 -34.33373 -31.86647 -30.43359 -29.37653 -27.46244 -26.71546 -24.07738 -23.10410 -22.15508 -21.96532 -21.23160 -20.06470 -19.33670 -19.01984 -18.30148 -16.92793 -16.63782 -16.29976 -15.96092 -15.78373 -15.64206 -15.44268 -15.15326 -14.89352 -14.43268 -14.25299 -14.18962 -14.03002 -13.89617 -13.34672 -13.25954 -13.05791 -12.72986 -12.46083 -12.33631 -12.23687 -12.02011 -11.53793 -11.39206 -11.04876 -10.99988 -10.78366 -10.63623 -10.07522 -9.84400 -8.62841 -8.47969 -6.20329 0.51051 0.55681 1.33495 1.38697 1.54363 1.58206 2.07338 2.30354 2.77988 2.78895 3.04869 3.18288 3.25327 3.66085 3.89979 4.01553 4.09919 4.12187 4.24124 4.46279 4.48272 4.56200 4.63878 4.70928 4.74079 4.93004 4.95991 4.98525 5.06331 5.18460 5.21524 5.24218 5.37316 5.42816 5.47992 5.50993 5.63516 5.76471 5.93039 6.01548 6.23141 6.85582 7.05165 7.52640 7.58839 8.63928 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.002460 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.495607 B =11378.892012 C =11817.024588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.149 4.149 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.162 4.162 6 H 0.128 0.872 7 C 0.170 3.830 8 N -0.721 5.721 9 C 0.694 3.306 10 O -0.625 6.625 11 N -0.661 5.661 12 C 0.089 3.911 13 C -0.079 4.079 14 C -0.166 4.166 15 C 0.110 3.890 16 O -0.240 6.240 17 C -0.400 4.400 18 H 0.075 0.925 19 C 0.005 3.995 20 N -0.926 5.926 21 Si 0.977 3.023 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.223 4.223 26 C -0.083 4.083 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.416 0.584 35 H 0.425 0.575 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.285 0.715 39 H 0.104 0.896 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.260 -8.827 -16.512 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 H 0.118 0.882 4 C -0.205 4.205 5 C -0.181 4.181 6 H 0.146 0.854 7 C 0.046 3.954 8 N -0.378 5.378 9 C 0.394 3.606 10 O -0.505 6.505 11 N -0.311 5.311 12 C -0.005 4.005 13 C -0.099 4.099 14 C -0.185 4.185 15 C 0.061 3.939 16 O -0.148 6.148 17 C -0.476 4.476 18 H 0.092 0.908 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.243 4.243 26 C -0.103 4.103 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.264 0.736 36 H 0.192 0.808 37 H 0.164 0.836 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.443 -7.947 -16.416 29.702 hybrid contribution 0.345 -0.016 0.496 0.604 sum -23.098 -7.963 -15.920 29.161 Atomic orbital electron populations 1.21377 0.91492 1.02702 1.02286 1.22493 0.96239 0.94479 1.03583 0.88166 1.23339 1.02766 1.01460 0.92966 1.22469 0.97181 1.03798 0.94610 0.85438 1.20714 0.94035 0.87106 0.93588 1.44849 1.23712 1.18125 1.51110 1.16189 0.81849 0.83492 0.79046 1.90942 1.58596 1.31655 1.69316 1.42067 1.19559 1.17877 1.51583 1.17219 0.88264 0.94687 1.00346 1.20824 0.91786 0.98282 0.99015 1.20397 0.98336 0.95618 1.04153 1.19682 0.85445 0.94966 0.93853 1.83500 1.31895 1.36930 1.62465 1.20674 1.09563 0.88437 1.28917 0.90786 1.25372 0.98309 1.01127 0.94432 1.69755 1.26970 1.27440 1.32562 0.85127 0.78119 0.78738 0.78153 1.19128 1.19311 1.18061 1.21111 0.97499 0.98696 1.06963 1.20918 0.95459 0.98527 0.95418 0.91977 0.91605 0.91661 0.89111 0.87157 0.92629 0.92844 0.74664 0.73637 0.80832 0.83644 0.90594 0.87836 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.22 16 2 C -0.15 -1.58 6.13 -10.77 -0.07 -1.64 16 3 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.17 -1.66 9.83 30.62 0.30 -1.36 16 5 C -0.16 -1.74 5.56 -10.79 -0.06 -1.80 16 6 H 0.13 0.95 8.04 -2.39 -0.02 0.93 16 7 C 0.17 2.98 5.96 86.38 0.51 3.49 16 8 N -0.72 -12.48 5.56 -478.54 -2.66 -15.14 16 9 C 0.69 18.97 8.41 179.06 1.51 20.47 16 10 O -0.62 -24.23 13.78 -4.00 -0.06 -24.29 16 11 N -0.66 -15.54 5.35 -317.04 -1.69 -17.23 16 12 C 0.09 2.92 6.30 38.15 0.24 3.16 16 13 C -0.08 -2.29 9.96 22.38 0.22 -2.06 16 14 C -0.17 -6.10 9.99 22.38 0.22 -5.88 16 15 C 0.11 5.29 6.65 22.59 0.15 5.44 16 16 O -0.24 -13.31 8.58 -22.92 -0.20 -13.51 16 17 C -0.40 -24.41 9.94 67.91 0.68 -23.74 16 18 H 0.07 4.83 5.43 -2.91 -0.02 4.82 16 19 C 0.01 0.32 5.49 84.83 0.47 0.79 16 20 N -0.93 -57.04 13.96 21.61 0.30 -56.74 16 21 Si 0.98 46.07 28.62 68.60 1.96 48.04 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.22 -10.83 9.16 22.37 0.20 -10.63 16 26 C -0.08 -3.46 8.69 22.38 0.19 -3.27 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.41 7.90 -2.38 -0.02 0.39 16 30 H 0.09 1.03 8.03 -2.39 -0.02 1.01 16 31 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.11 7.88 -2.39 -0.02 1.10 16 34 H 0.42 3.80 8.42 -92.70 -0.78 3.02 16 35 H 0.42 5.68 8.84 -92.71 -0.82 4.86 16 36 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.10 5.61 5.63 -2.91 -0.02 5.59 16 40 H 0.12 5.19 6.22 -2.91 -0.02 5.18 16 Total: -1.00 -78.29 340.85 2.44 -75.85 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.52 Total: 20.28 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.31 Total: -17.26 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -4.05 Total: -89.12 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.25 Total: -37.79 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.96 Total: 48.04 kcal Total: -78.29 2.44 -75.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043557928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.305 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds