Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 N 1.46502 * 109.46915 * 240.00480 * 2 1 3 5 5 C 1.34768 * 120.00166 * 85.00155 * 4 2 1 6 6 O 1.21591 * 120.00361 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00445 * 179.97438 * 5 4 2 8 8 C 1.39943 * 120.00484 * 174.72950 * 7 5 4 9 9 C 1.38955 * 120.03478 * 326.34751 * 8 7 5 10 10 C 1.38155 * 120.06838 * 180.02562 * 9 8 7 11 11 C 1.38176 * 120.13876 * 359.70055 * 10 9 8 12 12 C 1.38912 * 120.06629 * 0.55355 * 11 10 9 13 13 O 1.35747 * 120.03448 * 179.74558 * 12 11 10 14 14 C 1.34825 * 116.99973 * 173.82546 * 13 12 11 15 15 H 1.07996 * 120.00187 * 354.59146 * 14 13 12 16 16 C 1.38657 * 119.99760 * 174.59112 * 14 13 12 17 17 N 1.31562 * 120.00184 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99892 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46810 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47005 * 120.00058 * 18 16 14 21 21 H 1.48497 * 109.47165 * 240.00211 * 18 16 14 22 22 C 1.38708 * 120.03573 * 146.36795 * 8 7 5 23 23 C 1.52996 * 109.47034 * 120.00475 * 2 1 3 24 24 C 1.52999 * 117.50125 * 8.62167 * 23 2 1 25 25 C 1.52999 * 117.49987 * 299.99742 * 23 2 1 26 26 H 1.09002 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46825 * 299.99474 * 1 2 3 28 28 H 1.08995 * 109.46969 * 59.99605 * 1 2 3 29 29 H 0.97003 * 119.99930 * 264.99515 * 4 2 1 30 30 H 0.97006 * 119.99843 * 354.73322 * 7 5 4 31 31 H 1.07998 * 119.96551 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.93284 * 180.02562 * 10 9 8 33 33 H 1.07993 * 119.96695 * 180.30197 * 11 10 9 34 34 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.07020 * 0.02562 * 22 8 7 36 36 H 1.09002 * 115.55252 * 154.32934 * 23 2 1 37 37 H 1.09002 * 117.49714 * 359.97438 * 24 23 2 38 38 H 1.09000 * 117.50164 * 145.02213 * 24 23 2 39 39 H 1.08998 * 117.49893 * 214.98377 * 25 23 2 40 40 H 1.09000 * 117.50057 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3571 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6532 -3.4575 8 6 2.6263 0.0137 -4.6874 9 6 1.6491 0.9531 -4.9929 10 6 1.6773 1.6116 -6.2071 11 6 2.6802 1.3429 -7.1189 12 6 3.6570 0.4010 -6.8216 13 8 4.6390 0.1339 -7.7199 14 6 5.6256 -0.6936 -7.3203 15 1 5.6579 -1.0413 -6.2984 16 6 6.5987 -1.0980 -8.2214 17 7 6.5597 -0.6740 -9.4662 18 14 7.9662 -2.2439 -7.6675 19 1 7.7851 -2.5722 -6.2306 20 1 7.9208 -3.4927 -8.4697 21 1 9.2792 -1.5780 -7.8620 22 6 3.6309 -0.2626 -5.6031 23 6 2.0400 -0.7213 1.2492 24 6 1.0105 -1.4543 2.1115 25 6 1.6358 -0.1497 2.6096 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.2491 -1.6317 -1.1528 30 1 2.8999 -1.5727 -3.3970 31 1 0.8667 1.1688 -4.2803 32 1 0.9169 2.3416 -6.4421 33 1 2.7023 1.8628 -8.0652 34 1 7.2407 -0.9566 -10.0964 35 1 4.3911 -0.9929 -5.3684 36 1 3.0324 -1.1642 1.1641 37 1 -0.0303 -1.4222 1.7892 38 1 1.3253 -2.3796 2.5940 39 1 2.3620 -0.2168 3.4196 40 1 1.0062 0.7401 2.6147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = -0.744015 kcal Electronic energy + Delta-G solvation = -22227.612078 eV Core-core repulsion = 18816.309422 eV Total energy + Delta-G solvation = -3411.302656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46689 -39.01075 -38.24138 -36.44903 -34.29745 -34.16020 -32.21265 -30.29268 -29.07869 -28.22281 -25.35748 -25.03864 -22.80550 -22.18047 -21.76306 -20.37123 -20.03445 -18.53652 -17.82522 -17.41233 -16.59377 -15.61672 -15.45787 -15.08110 -14.90708 -14.64227 -14.27374 -14.12616 -13.85260 -13.52669 -13.34185 -12.93668 -12.46377 -12.24498 -12.23997 -11.76169 -11.68046 -11.55248 -11.26937 -11.11788 -11.02169 -10.82286 -10.69773 -10.45297 -10.41897 -9.99129 -9.58649 -9.45050 -9.16057 -8.78475 -7.66917 -7.10132 -6.43242 -4.02678 2.09900 2.43345 2.66251 3.11925 3.12920 3.18523 3.34047 3.45831 3.97035 4.20898 4.31100 4.54994 4.64129 4.64779 4.79394 5.07296 5.12776 5.19930 5.31287 5.31440 5.49180 5.51673 5.67444 5.73824 5.75740 5.83110 6.03911 6.05531 6.12916 6.28824 6.30148 6.45243 6.60247 6.84451 7.04595 7.14530 7.32235 7.37382 7.46365 7.86606 8.01386 8.06983 8.67611 9.02462 9.73847 10.75080 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.003318 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.432035 B = 8435.653253 C = 9645.492022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.192 3.808 3 H 0.092 0.908 4 N -0.741 5.741 5 C 0.703 3.297 6 O -0.571 6.571 7 N -0.683 5.683 8 C 0.199 3.801 9 C -0.204 4.204 10 C -0.063 4.063 11 C -0.203 4.203 12 C 0.169 3.831 13 O -0.177 6.177 14 C -0.390 4.390 15 H 0.090 0.910 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.258 4.258 23 C -0.167 4.167 24 C -0.183 4.183 25 C -0.170 4.170 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.395 0.605 30 H 0.402 0.598 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.269 0.731 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 -3.496 20.134 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 H 0.110 0.890 4 N -0.397 5.397 5 C 0.404 3.596 6 O -0.447 6.447 7 N -0.329 5.329 8 C 0.105 3.895 9 C -0.225 4.225 10 C -0.082 4.082 11 C -0.222 4.222 12 C 0.115 3.885 13 O -0.081 6.081 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.280 4.280 23 C -0.186 4.186 24 C -0.219 4.219 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.236 0.764 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.741 -2.364 19.688 22.093 hybrid contribution 1.082 -1.635 0.431 2.007 sum -8.659 -3.999 20.119 22.265 Atomic orbital electron populations 1.22319 0.95468 1.02107 1.02614 1.20213 0.93472 0.96598 0.81054 0.88960 1.45165 1.72038 1.13565 1.08903 1.15907 0.78505 0.85108 0.80082 1.90945 1.55872 1.13806 1.84035 1.42604 1.67436 1.16305 1.06588 1.17178 0.94231 0.94778 0.83262 1.20556 1.00956 1.02796 0.98227 1.20524 0.96943 0.97953 0.92763 1.20239 0.97531 1.02822 1.01652 1.19066 0.88730 0.92205 0.88507 1.84017 1.29221 1.58818 1.36034 1.21312 1.02345 1.26026 0.96996 0.89246 1.25272 0.98465 0.97926 0.94870 1.70049 1.34240 1.42302 1.03232 0.85666 0.79902 0.79234 0.78700 1.19244 1.20187 1.20158 1.20783 1.01554 1.08892 0.96771 1.22559 0.99950 1.04513 0.91534 1.23196 0.99113 0.96085 1.03556 1.22951 1.03709 0.97811 0.96256 0.92143 0.91718 0.91658 0.77097 0.76358 0.86260 0.86672 0.86427 0.92109 0.85334 0.87242 0.87834 0.88877 0.88574 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.08 37.16 0.30 -1.20 16 2 C 0.19 1.87 2.97 -67.93 -0.20 1.67 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 4 N -0.74 -7.95 5.08 -58.68 -0.30 -8.25 16 5 C 0.70 10.78 8.26 -86.93 -0.72 10.07 16 6 O -0.57 -10.93 13.71 5.29 0.07 -10.86 16 7 N -0.68 -10.56 5.35 -14.24 -0.08 -10.63 16 8 C 0.20 3.90 6.27 -83.72 -0.52 3.38 16 9 C -0.20 -4.03 8.65 -39.35 -0.34 -4.37 16 10 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 11 C -0.20 -4.43 9.99 -39.35 -0.39 -4.82 16 12 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 13 O -0.18 -5.08 9.76 0.07 0.00 -5.08 16 14 C -0.39 -10.89 9.44 30.89 0.29 -10.60 16 15 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.34 13.67 55.48 0.76 -24.59 16 18 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.26 -5.67 9.04 -39.21 -0.35 -6.02 16 23 C -0.17 -1.23 5.87 -90.62 -0.53 -1.76 16 24 C -0.18 -1.11 9.57 -26.73 -0.26 -1.37 16 25 C -0.17 -1.08 9.90 -26.73 -0.26 -1.35 16 26 H 0.06 0.48 6.98 -51.93 -0.36 0.12 16 27 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.40 3.14 8.62 -40.82 -0.35 2.79 16 30 H 0.40 4.87 8.83 -40.82 -0.36 4.51 16 31 H 0.12 2.32 6.43 -52.49 -0.34 1.98 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.61 5.85 -51.93 -0.30 0.31 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.60 7.61 -51.93 -0.39 0.21 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -33.35 335.63 -8.38 -41.73 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.12 Total: 10.35 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.75 Total: -13.13 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.38 Total: -43.47 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.07 Total: -15.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.35 -8.38 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.983 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds