Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 N 1.46502 * 109.46915 * 240.00480 * 2 1 3 5 5 C 1.34768 * 120.00166 * 85.00155 * 4 2 1 6 6 O 1.21591 * 120.00361 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00445 * 179.97438 * 5 4 2 8 8 C 1.39943 * 120.00484 * 174.72950 * 7 5 4 9 9 C 1.38955 * 120.03478 * 326.34751 * 8 7 5 10 10 C 1.38155 * 120.06838 * 180.02562 * 9 8 7 11 11 C 1.38176 * 120.13876 * 359.70055 * 10 9 8 12 12 C 1.38912 * 120.06629 * 0.55355 * 11 10 9 13 13 O 1.35747 * 120.03448 * 179.74558 * 12 11 10 14 14 C 1.34825 * 116.99973 * 173.82546 * 13 12 11 15 15 H 1.07996 * 120.00187 * 354.59146 * 14 13 12 16 16 C 1.38657 * 119.99760 * 174.59112 * 14 13 12 17 17 N 1.31562 * 120.00184 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99892 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46810 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47005 * 120.00058 * 18 16 14 21 21 H 1.48497 * 109.47165 * 240.00211 * 18 16 14 22 22 C 1.38708 * 120.03573 * 146.36795 * 8 7 5 23 23 C 1.52996 * 109.47034 * 120.00475 * 2 1 3 24 24 C 1.52999 * 117.50125 * 8.62167 * 23 2 1 25 25 C 1.52999 * 117.49987 * 299.99742 * 23 2 1 26 26 H 1.09002 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46825 * 299.99474 * 1 2 3 28 28 H 1.08995 * 109.46969 * 59.99605 * 1 2 3 29 29 H 0.97003 * 119.99930 * 264.99515 * 4 2 1 30 30 H 0.97006 * 119.99843 * 354.73322 * 7 5 4 31 31 H 1.07998 * 119.96551 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.93284 * 180.02562 * 10 9 8 33 33 H 1.07993 * 119.96695 * 180.30197 * 11 10 9 34 34 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.07020 * 0.02562 * 22 8 7 36 36 H 1.09002 * 115.55252 * 154.32934 * 23 2 1 37 37 H 1.09002 * 117.49714 * 359.97438 * 24 23 2 38 38 H 1.09000 * 117.50164 * 145.02213 * 24 23 2 39 39 H 1.08998 * 117.49893 * 214.98377 * 25 23 2 40 40 H 1.09000 * 117.50057 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3571 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6532 -3.4575 8 6 2.6263 0.0137 -4.6874 9 6 1.6491 0.9531 -4.9929 10 6 1.6773 1.6116 -6.2071 11 6 2.6802 1.3429 -7.1189 12 6 3.6570 0.4010 -6.8216 13 8 4.6390 0.1339 -7.7199 14 6 5.6256 -0.6936 -7.3203 15 1 5.6579 -1.0413 -6.2984 16 6 6.5987 -1.0980 -8.2214 17 7 6.5597 -0.6740 -9.4662 18 14 7.9662 -2.2439 -7.6675 19 1 7.7851 -2.5722 -6.2306 20 1 7.9208 -3.4927 -8.4697 21 1 9.2792 -1.5780 -7.8620 22 6 3.6309 -0.2626 -5.6031 23 6 2.0400 -0.7213 1.2492 24 6 1.0105 -1.4543 2.1115 25 6 1.6358 -0.1497 2.6096 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.2491 -1.6317 -1.1528 30 1 2.8999 -1.5727 -3.3970 31 1 0.8667 1.1688 -4.2803 32 1 0.9169 2.3416 -6.4421 33 1 2.7023 1.8628 -8.0652 34 1 7.2407 -0.9566 -10.0964 35 1 4.3911 -0.9929 -5.3684 36 1 3.0324 -1.1642 1.1641 37 1 -0.0303 -1.4222 1.7892 38 1 1.3253 -2.3796 2.5940 39 1 2.3620 -0.2168 3.4196 40 1 1.0062 0.7401 2.6147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048488616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = -22.926319 kcal Electronic energy + Delta-G solvation = -22228.573975 eV Core-core repulsion = 18816.309422 eV Total energy + Delta-G solvation = -3412.264553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75422 -40.55300 -39.23890 -38.06344 -35.63710 -35.27746 -34.20907 -31.41802 -30.65935 -29.70404 -27.29598 -25.90451 -23.65290 -23.47807 -23.20405 -21.73895 -20.87587 -20.02593 -19.40362 -18.95221 -17.65509 -16.90927 -16.78767 -16.51763 -16.33981 -15.88716 -15.68844 -15.51310 -15.29013 -15.05673 -14.56012 -14.35130 -14.00045 -13.56276 -13.28507 -13.04875 -12.89543 -12.76874 -12.70071 -12.38012 -12.23229 -12.08071 -11.93653 -11.57427 -11.40503 -11.24762 -11.13321 -10.96046 -10.72221 -10.14747 -9.31912 -8.82798 -8.45631 -6.14195 0.46249 0.72064 1.36443 1.44720 1.52638 1.54761 2.05696 2.18601 2.85232 2.87640 3.17365 3.20654 3.51060 3.68663 3.97776 4.10681 4.12839 4.18264 4.33206 4.35556 4.46774 4.52272 4.64307 4.74006 4.79479 4.88074 4.92902 5.02810 5.05939 5.12445 5.17293 5.30715 5.35146 5.36852 5.49556 5.52974 5.69013 5.70653 5.98264 6.03157 6.22311 6.96241 6.99130 7.46458 7.79043 8.77764 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.003318 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.432035 B = 8435.653253 C = 9645.492022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.190 3.810 3 H 0.067 0.933 4 N -0.719 5.719 5 C 0.702 3.298 6 O -0.610 6.610 7 N -0.675 5.675 8 C 0.207 3.793 9 C -0.199 4.199 10 C -0.051 4.051 11 C -0.216 4.216 12 C 0.135 3.865 13 O -0.226 6.226 14 C -0.412 4.412 15 H 0.102 0.898 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.019 2.981 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.271 1.271 22 C -0.261 4.261 23 C -0.174 4.174 24 C -0.171 4.171 25 C -0.170 4.170 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.412 0.588 30 H 0.419 0.581 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.119 0.881 34 H 0.273 0.727 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 -4.869 23.212 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.085 3.915 3 H 0.085 0.915 4 N -0.375 5.375 5 C 0.402 3.598 6 O -0.489 6.489 7 N -0.323 5.323 8 C 0.111 3.889 9 C -0.220 4.220 10 C -0.069 4.069 11 C -0.236 4.236 12 C 0.084 3.916 13 O -0.133 6.133 14 C -0.488 4.488 15 H 0.119 0.881 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.838 3.162 19 H -0.173 1.173 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.283 4.283 23 C -0.193 4.193 24 C -0.207 4.207 25 C -0.207 4.207 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.249 0.751 30 H 0.257 0.743 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.529 -3.781 22.849 25.441 hybrid contribution 1.070 -1.100 -0.326 1.569 sum -9.458 -4.880 22.523 24.911 Atomic orbital electron populations 1.22269 0.94644 1.02875 1.02127 1.20290 0.94085 0.95635 0.81468 0.91532 1.45049 1.70556 1.14243 1.07685 1.16052 0.78168 0.84742 0.80819 1.90918 1.57549 1.15679 1.84759 1.42456 1.67413 1.16961 1.05428 1.17185 0.93097 0.94412 0.84191 1.20849 1.00771 1.02115 0.98288 1.20906 0.96531 0.97776 0.91720 1.20470 0.97856 1.02690 1.02562 1.19581 0.89092 0.93645 0.89263 1.83983 1.30771 1.60531 1.37978 1.21827 1.02898 1.26156 0.97884 0.88093 1.26589 1.01092 0.99560 0.94765 1.70194 1.35961 1.44775 1.04911 0.84527 0.75806 0.76678 0.79165 1.17294 1.19264 1.19626 1.20794 1.02208 1.08833 0.96475 1.22425 1.00588 1.05514 0.90759 1.23265 0.98842 0.96352 1.02290 1.23055 1.03884 0.98193 0.95605 0.90664 0.90077 0.94301 0.75088 0.74326 0.85355 0.82898 0.86250 0.91837 0.85336 0.86886 0.87430 0.87709 0.87686 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.08 71.98 0.58 -1.99 16 2 C 0.19 3.37 2.97 44.99 0.13 3.50 16 3 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 4 N -0.72 -13.93 5.08 -457.82 -2.33 -16.26 16 5 C 0.70 20.39 8.26 179.06 1.48 21.87 16 6 O -0.61 -22.77 13.71 -4.00 -0.05 -22.83 16 7 N -0.67 -19.69 5.35 -317.24 -1.70 -21.39 16 8 C 0.21 7.87 6.27 38.13 0.24 8.11 16 9 C -0.20 -7.55 8.65 22.42 0.19 -7.35 16 10 C -0.05 -1.89 10.03 22.24 0.22 -1.67 16 11 C -0.22 -9.54 9.99 22.42 0.22 -9.31 16 12 C 0.14 6.85 6.64 22.56 0.15 7.00 16 13 O -0.23 -13.60 9.76 -22.66 -0.22 -13.82 16 14 C -0.41 -23.72 9.44 67.92 0.64 -23.08 16 15 H 0.10 5.31 5.30 -2.91 -0.02 5.30 16 16 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 17 N -0.92 -56.24 13.67 21.61 0.30 -55.95 16 18 Si 1.02 42.20 29.55 68.60 2.03 44.22 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 C -0.26 -11.53 9.04 22.51 0.20 -11.33 16 23 C -0.17 -2.12 5.87 -10.80 -0.06 -2.18 16 24 C -0.17 -1.51 9.57 30.59 0.29 -1.22 16 25 C -0.17 -1.71 9.90 30.59 0.30 -1.41 16 26 H 0.07 0.98 6.98 -2.39 -0.02 0.96 16 27 H 0.08 1.02 7.07 -2.39 -0.02 1.01 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.41 5.35 8.62 -92.71 -0.80 4.55 16 30 H 0.42 9.23 8.83 -92.70 -0.82 8.42 16 31 H 0.13 4.73 6.43 -2.91 -0.02 4.71 16 32 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.13 5.57 5.72 -2.91 -0.02 5.55 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 0.89 5.85 -2.39 -0.01 0.87 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.98 7.61 -2.39 -0.02 0.96 16 Total: -1.00 -75.67 335.63 2.56 -73.11 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.53 Total: 32.76 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 5.07 Total: -19.85 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -3.73 Total: -93.59 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.28 Total: -36.65 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -75.67 2.56 -73.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.180 kcal (2) G-P(sol) polarization free energy of solvation -75.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds