Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46925 * 2 1 4 4 N 1.46500 * 109.47018 * 119.99957 * 2 1 3 5 5 C 1.34774 * 119.99956 * 274.99924 * 4 2 1 6 6 O 1.21592 * 120.00194 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00052 * 179.97438 * 5 4 2 8 8 C 1.39940 * 119.99932 * 174.72995 * 7 5 4 9 9 C 1.38961 * 120.03416 * 146.08913 * 8 7 5 10 10 C 1.38158 * 120.06586 * 179.74739 * 9 8 7 11 11 C 1.38167 * 120.13952 * 0.55261 * 10 9 8 12 12 C 1.38912 * 120.06982 * 359.70044 * 11 10 9 13 13 O 1.35745 * 120.03417 * 180.02562 * 12 11 10 14 14 C 1.34829 * 116.99916 * 5.92168 * 13 12 11 15 15 H 1.08001 * 120.00653 * 5.41657 * 14 13 12 16 16 C 1.38654 * 119.99919 * 185.40868 * 14 13 12 17 17 N 1.31560 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47142 * 60.00069 * 18 16 14 20 20 H 1.48493 * 109.47473 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47347 * 300.00555 * 18 16 14 22 22 C 1.38710 * 120.03668 * 326.36570 * 8 7 5 23 23 C 1.52999 * 109.46900 * 239.99758 * 2 1 3 24 24 C 1.52998 * 117.49964 * 60.00473 * 23 2 1 25 25 C 1.52998 * 60.03451 * 107.47558 * 24 23 2 26 26 H 1.08999 * 109.46844 * 60.00080 * 1 2 3 27 27 H 1.09003 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47243 * 300.00128 * 1 2 3 29 29 H 0.96998 * 119.99901 * 94.99754 * 4 2 1 30 30 H 0.97001 * 119.99938 * 354.73341 * 7 5 4 31 31 H 1.08001 * 119.96347 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.92894 * 180.27334 * 10 9 8 33 33 H 1.08001 * 119.96400 * 179.72476 * 11 10 9 34 34 H 0.97001 * 120.00333 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.06797 * 359.95136 * 22 8 7 36 36 H 1.09005 * 115.56502 * 274.31045 * 23 2 1 37 37 H 1.09006 * 117.49688 * 214.97936 * 24 23 2 38 38 H 1.09002 * 117.49995 * 359.97040 * 24 23 2 39 39 H 1.08995 * 117.49858 * 107.50442 * 25 24 23 40 40 H 1.08996 * 117.49676 * 252.52342 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1616 2.4116 7 7 2.5958 -0.6537 3.4578 8 6 2.8344 0.0669 4.6334 9 6 2.6057 -0.5241 5.8700 10 6 2.8460 0.1850 7.0311 11 6 3.3034 1.4871 6.9667 12 6 3.5290 2.0854 5.7335 13 8 3.9789 3.3646 5.6710 14 6 4.3034 3.9570 6.8379 15 1 4.2842 3.3884 7.7560 16 6 4.6622 5.2961 6.8594 17 7 4.6853 5.9889 5.7412 18 14 5.1126 6.1167 8.4759 19 1 6.2810 5.4227 9.0746 20 1 5.4547 7.5406 8.2299 21 1 3.9596 6.0392 9.4086 22 6 3.2940 1.3739 4.5654 23 6 2.0400 -0.7213 -1.2492 24 6 1.6357 -0.1496 -2.6096 25 6 3.0743 0.0057 -2.1123 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2490 -1.6318 1.1526 30 1 2.7534 -1.6106 3.4350 31 1 2.2440 -1.5403 5.9236 32 1 2.6717 -0.2781 7.9911 33 1 3.4861 2.0403 7.8761 34 1 4.9359 6.9259 5.7562 35 1 3.4690 1.8367 3.6054 36 1 2.1271 -1.8045 -1.1643 37 1 1.4568 -0.8567 -3.4196 38 1 1.0061 0.7402 -2.6146 39 1 3.8418 -0.5991 -2.5951 40 1 3.3909 0.9975 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = -1.887035 kcal Electronic energy + Delta-G solvation = -22291.805643 eV Core-core repulsion = 18880.453422 eV Total energy + Delta-G solvation = -3411.352221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37511 -38.86815 -38.01269 -36.48175 -34.34079 -33.99501 -32.18900 -30.40335 -29.25405 -28.06120 -25.25773 -24.55383 -22.53582 -22.36972 -21.38490 -20.61690 -20.41087 -18.27328 -18.12221 -17.08026 -16.69905 -15.33511 -15.20180 -15.00514 -14.82823 -14.47033 -14.17552 -14.05793 -13.75069 -13.50085 -13.35564 -12.82747 -12.56446 -12.41812 -12.17647 -11.68570 -11.65268 -11.45629 -11.13872 -11.01930 -10.92346 -10.76676 -10.70274 -10.44330 -10.38535 -9.91896 -9.66994 -9.23662 -9.03385 -8.75376 -7.58696 -7.10974 -6.36350 -3.95620 2.15202 2.41765 2.71543 3.17918 3.19060 3.22129 3.40814 3.54697 4.01825 4.24927 4.36386 4.64491 4.66762 4.73890 4.95519 5.18946 5.20520 5.32029 5.38094 5.39079 5.53224 5.64751 5.68221 5.76276 5.87490 5.89164 5.95737 6.15321 6.17144 6.29711 6.42478 6.54523 6.61283 6.91341 7.09165 7.13327 7.31075 7.40521 7.54957 7.88731 8.08228 8.11964 8.76380 9.08372 9.80842 10.81612 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003393 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.672506 B = 8251.296818 C = 9301.328426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.190 3.810 3 H 0.091 0.909 4 N -0.740 5.740 5 C 0.699 3.301 6 O -0.560 6.560 7 N -0.683 5.683 8 C 0.196 3.804 9 C -0.238 4.238 10 C -0.058 4.058 11 C -0.247 4.247 12 C 0.169 3.831 13 O -0.174 6.174 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.861 5.861 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.187 4.187 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.177 4.177 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.393 0.607 30 H 0.401 0.599 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.270 0.730 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -16.337 -11.084 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 H 0.109 0.891 4 N -0.396 5.396 5 C 0.399 3.601 6 O -0.434 6.434 7 N -0.330 5.330 8 C 0.102 3.898 9 C -0.259 4.259 10 C -0.077 4.077 11 C -0.267 4.267 12 C 0.114 3.886 13 O -0.077 6.077 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.209 4.209 23 C -0.183 4.183 24 C -0.207 4.207 25 C -0.214 4.214 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.235 0.765 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.074 -14.808 -11.364 19.343 hybrid contribution 0.340 -0.663 0.811 1.101 sum -4.733 -15.471 -10.553 19.316 Atomic orbital electron populations 1.22169 0.95142 1.01965 1.02688 1.20315 0.93647 0.96568 0.80967 0.89102 1.45142 1.72291 1.13482 1.08704 1.15969 0.78482 0.85359 0.80256 1.91031 1.54798 1.13839 1.83776 1.42503 1.69425 1.11072 1.09992 1.16935 0.97435 0.91627 0.83775 1.20229 1.13816 1.00879 0.91021 1.20481 0.96848 0.93706 0.96666 1.21165 1.10868 0.96587 0.98070 1.19121 0.90869 0.86080 0.92541 1.84007 1.70308 1.20026 1.33385 1.21285 1.46414 0.93972 0.85107 0.89105 1.25295 0.96962 0.95324 0.98986 1.70049 1.44272 1.09053 1.26239 0.85789 0.79153 0.78334 0.80164 1.19533 1.20338 1.19533 1.20043 1.08980 0.94007 0.97842 1.22471 1.04911 0.99291 0.91594 1.22943 0.98404 1.03299 0.96078 1.23092 0.92445 1.02406 1.03411 0.91666 0.92634 0.91710 0.77361 0.76511 0.87485 0.87091 0.85506 0.92026 0.85245 0.87515 0.88605 0.88368 0.88719 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.32 37.16 0.35 -1.31 16 2 C 0.19 2.08 2.81 -67.93 -0.19 1.88 16 3 H 0.09 1.25 7.33 -51.93 -0.38 0.87 16 4 N -0.74 -8.39 5.08 -58.67 -0.30 -8.69 16 5 C 0.70 11.37 8.26 -86.92 -0.72 10.65 16 6 O -0.56 -12.07 13.71 5.28 0.07 -12.00 16 7 N -0.68 -10.27 5.35 -14.24 -0.08 -10.34 16 8 C 0.20 3.79 6.27 -83.71 -0.52 3.27 16 9 C -0.24 -4.19 9.96 -39.34 -0.39 -4.58 16 10 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 11 C -0.25 -5.58 9.13 -39.36 -0.36 -5.94 16 12 C 0.17 4.36 6.64 -39.13 -0.26 4.10 16 13 O -0.17 -5.26 9.76 0.07 0.00 -5.26 16 14 C -0.39 -11.33 9.44 30.89 0.29 -11.04 16 15 H 0.09 2.41 5.30 -52.49 -0.28 2.13 16 16 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -26.19 13.67 55.48 0.76 -25.43 16 18 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.19 -4.45 8.59 -39.21 -0.34 -4.79 16 23 C -0.16 -1.32 5.35 -90.58 -0.48 -1.81 16 24 C -0.17 -1.22 9.73 -26.73 -0.26 -1.48 16 25 C -0.18 -1.45 10.18 -26.69 -0.27 -1.72 16 26 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.39 3.07 8.57 -40.82 -0.35 2.72 16 30 H 0.40 4.22 8.84 -40.82 -0.36 3.86 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.13 3.32 6.44 -52.49 -0.34 2.98 16 36 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.71 7.61 -51.93 -0.39 0.32 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.92 8.05 -51.93 -0.42 0.51 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -35.15 339.84 -8.39 -43.53 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.29 Total: 10.29 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.65 Total: -13.26 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.38 Total: -44.46 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.07 Total: -17.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.15 -8.39 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.647 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds