Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46925 * 2 1 4 4 N 1.46500 * 109.47018 * 119.99957 * 2 1 3 5 5 C 1.34774 * 119.99956 * 274.99924 * 4 2 1 6 6 O 1.21592 * 120.00194 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00052 * 179.97438 * 5 4 2 8 8 C 1.39940 * 119.99932 * 174.72995 * 7 5 4 9 9 C 1.38961 * 120.03416 * 146.08913 * 8 7 5 10 10 C 1.38158 * 120.06586 * 179.74739 * 9 8 7 11 11 C 1.38167 * 120.13952 * 0.55261 * 10 9 8 12 12 C 1.38912 * 120.06982 * 359.70044 * 11 10 9 13 13 O 1.35745 * 120.03417 * 180.02562 * 12 11 10 14 14 C 1.34829 * 116.99916 * 5.92168 * 13 12 11 15 15 H 1.08001 * 120.00653 * 5.41657 * 14 13 12 16 16 C 1.38654 * 119.99919 * 185.40868 * 14 13 12 17 17 N 1.31560 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47142 * 60.00069 * 18 16 14 20 20 H 1.48493 * 109.47473 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47347 * 300.00555 * 18 16 14 22 22 C 1.38710 * 120.03668 * 326.36570 * 8 7 5 23 23 C 1.52999 * 109.46900 * 239.99758 * 2 1 3 24 24 C 1.52998 * 117.49964 * 60.00473 * 23 2 1 25 25 C 1.52998 * 60.03451 * 107.47558 * 24 23 2 26 26 H 1.08999 * 109.46844 * 60.00080 * 1 2 3 27 27 H 1.09003 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47243 * 300.00128 * 1 2 3 29 29 H 0.96998 * 119.99901 * 94.99754 * 4 2 1 30 30 H 0.97001 * 119.99938 * 354.73341 * 7 5 4 31 31 H 1.08001 * 119.96347 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.92894 * 180.27334 * 10 9 8 33 33 H 1.08001 * 119.96400 * 179.72476 * 11 10 9 34 34 H 0.97001 * 120.00333 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.06797 * 359.95136 * 22 8 7 36 36 H 1.09005 * 115.56502 * 274.31045 * 23 2 1 37 37 H 1.09006 * 117.49688 * 214.97936 * 24 23 2 38 38 H 1.09002 * 117.49995 * 359.97040 * 24 23 2 39 39 H 1.08995 * 117.49858 * 107.50442 * 25 24 23 40 40 H 1.08996 * 117.49676 * 252.52342 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1616 2.4116 7 7 2.5958 -0.6537 3.4578 8 6 2.8344 0.0669 4.6334 9 6 2.6057 -0.5241 5.8700 10 6 2.8460 0.1850 7.0311 11 6 3.3034 1.4871 6.9667 12 6 3.5290 2.0854 5.7335 13 8 3.9789 3.3646 5.6710 14 6 4.3034 3.9570 6.8379 15 1 4.2842 3.3884 7.7560 16 6 4.6622 5.2961 6.8594 17 7 4.6853 5.9889 5.7412 18 14 5.1126 6.1167 8.4759 19 1 6.2810 5.4227 9.0746 20 1 5.4547 7.5406 8.2299 21 1 3.9596 6.0392 9.4086 22 6 3.2940 1.3739 4.5654 23 6 2.0400 -0.7213 -1.2492 24 6 1.6357 -0.1496 -2.6096 25 6 3.0743 0.0057 -2.1123 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2490 -1.6318 1.1526 30 1 2.7534 -1.6106 3.4350 31 1 2.2440 -1.5403 5.9236 32 1 2.6717 -0.2781 7.9911 33 1 3.4861 2.0403 7.8761 34 1 4.9359 6.9259 5.7562 35 1 3.4690 1.8367 3.6054 36 1 2.1271 -1.8045 -1.1643 37 1 1.4568 -0.8567 -3.4196 38 1 1.0061 0.7402 -2.6146 39 1 3.8418 -0.5991 -2.5951 40 1 3.3909 0.9975 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048488619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = -27.287464 kcal Electronic energy + Delta-G solvation = -22292.907088 eV Core-core repulsion = 18880.453422 eV Total energy + Delta-G solvation = -3412.453666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74982 -40.52055 -39.08886 -38.09459 -35.56179 -35.39251 -34.25073 -31.58995 -30.91414 -29.57162 -27.32047 -25.53218 -23.86558 -23.16684 -23.06848 -21.88336 -21.45322 -19.95912 -19.53957 -18.85005 -17.82727 -16.86847 -16.71247 -16.51627 -16.12474 -15.91904 -15.62124 -15.47540 -15.25317 -14.91083 -14.51433 -14.26688 -14.24101 -13.59469 -13.44030 -13.13835 -12.97276 -12.91828 -12.62416 -12.36042 -12.32031 -12.15534 -11.86093 -11.63124 -11.35843 -11.30235 -11.12143 -10.97482 -10.74296 -10.15582 -9.29304 -8.82520 -8.45457 -6.15333 0.48298 0.72948 1.34548 1.46641 1.51315 1.53198 2.06124 2.19161 2.82627 2.85525 3.14017 3.20360 3.59796 3.61504 3.96269 4.10897 4.15929 4.18790 4.37657 4.39360 4.44645 4.46913 4.70209 4.72324 4.75494 4.81669 4.91611 5.01740 5.05228 5.12070 5.17334 5.26729 5.27670 5.39928 5.49189 5.53128 5.65687 5.76298 6.00407 6.04371 6.23830 6.97870 7.02147 7.50558 7.81492 8.78432 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.003393 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.672506 B = 8251.296818 C = 9301.328426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 H 0.051 0.949 4 N -0.715 5.715 5 C 0.693 3.307 6 O -0.619 6.619 7 N -0.665 5.665 8 C 0.205 3.795 9 C -0.206 4.206 10 C -0.047 4.047 11 C -0.257 4.257 12 C 0.128 3.872 13 O -0.237 6.237 14 C -0.414 4.414 15 H 0.107 0.893 16 C -0.028 4.028 17 N -0.926 5.926 18 Si 1.024 2.976 19 H -0.254 1.254 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.215 4.215 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.190 4.190 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.416 0.584 30 H 0.428 0.572 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.124 0.876 34 H 0.272 0.728 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -20.866 -10.135 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 H 0.070 0.930 4 N -0.371 5.371 5 C 0.394 3.606 6 O -0.498 6.498 7 N -0.315 5.315 8 C 0.109 3.891 9 C -0.226 4.226 10 C -0.065 4.065 11 C -0.277 4.277 12 C 0.077 3.923 13 O -0.144 6.144 14 C -0.490 4.490 15 H 0.124 0.876 16 C -0.225 4.225 17 N -0.564 5.564 18 Si 0.843 3.157 19 H -0.178 1.178 20 H -0.198 1.198 21 H -0.179 1.179 22 C -0.237 4.237 23 C -0.177 4.177 24 C -0.195 4.195 25 C -0.227 4.227 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.253 0.747 30 H 0.267 0.733 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.013 -19.490 -10.456 22.920 hybrid contribution 0.503 0.410 0.361 0.743 sum -5.510 -19.079 -10.095 22.277 Atomic orbital electron populations 1.22104 0.94325 1.03136 1.01714 1.20369 0.94299 0.95206 0.82040 0.93043 1.44932 1.70745 1.14345 1.07119 1.16251 0.78170 0.84758 0.81446 1.91018 1.57230 1.16813 1.84760 1.42257 1.68662 1.12077 1.08501 1.17076 0.95596 0.90143 0.86271 1.20860 1.09793 1.02777 0.89204 1.21036 0.94274 0.91759 0.99439 1.21321 1.11485 0.98515 0.96396 1.19656 0.92577 0.85379 0.94712 1.83969 1.73367 1.22513 1.34507 1.21875 1.46817 0.94792 0.85526 0.87607 1.26737 0.96541 0.95668 1.03548 1.70229 1.47178 1.09551 1.29435 0.84581 0.79601 0.76970 0.74583 1.17761 1.19790 1.17932 1.20052 1.11365 0.96338 0.95912 1.22414 1.04843 1.00206 0.90255 1.23045 0.97095 1.03419 0.95921 1.23123 0.93650 1.01698 1.04248 0.90301 0.90219 0.95108 0.74653 0.73264 0.81773 0.82111 0.85865 0.91918 0.88865 0.84741 0.86245 0.88883 0.87176 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.32 71.98 0.67 -2.40 16 2 C 0.19 4.02 2.81 44.99 0.13 4.14 16 3 H 0.05 1.54 7.33 -2.39 -0.02 1.52 16 4 N -0.71 -15.31 5.08 -457.81 -2.33 -17.63 16 5 C 0.69 22.60 8.26 179.05 1.48 24.08 16 6 O -0.62 -28.46 13.71 -4.01 -0.05 -28.51 16 7 N -0.67 -18.64 5.35 -317.22 -1.70 -20.33 16 8 C 0.20 7.63 6.27 38.13 0.24 7.87 16 9 C -0.21 -6.26 9.96 22.42 0.22 -6.03 16 10 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 11 C -0.26 -11.61 9.13 22.41 0.20 -11.40 16 12 C 0.13 6.99 6.64 22.56 0.15 7.14 16 13 O -0.24 -15.55 9.76 -22.68 -0.22 -15.77 16 14 C -0.41 -25.45 9.44 67.92 0.64 -24.80 16 15 H 0.11 5.84 5.30 -2.91 -0.02 5.83 16 16 C -0.03 -1.69 5.49 84.83 0.47 -1.22 16 17 N -0.93 -60.31 13.67 21.61 0.30 -60.01 16 18 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 19 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C -0.21 -10.78 8.59 22.51 0.19 -10.59 16 23 C -0.16 -2.23 5.35 -10.77 -0.06 -2.29 16 24 C -0.16 -1.95 9.73 30.59 0.30 -1.65 16 25 C -0.19 -2.97 10.18 30.62 0.31 -2.65 16 26 H 0.08 1.34 7.29 -2.39 -0.02 1.32 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.42 5.13 8.57 -92.71 -0.79 4.34 16 30 H 0.43 7.17 8.84 -92.71 -0.82 6.35 16 31 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.12 5.55 5.71 -2.91 -0.02 5.53 16 34 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 35 H 0.09 5.29 6.44 -2.91 -0.02 5.27 16 36 H 0.13 1.21 8.07 -2.38 -0.02 1.19 16 37 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.09 1.26 7.61 -2.39 -0.02 1.24 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 Total: -1.00 -88.46 339.84 2.66 -85.80 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.53 Total: 31.03 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.17 Total: -21.15 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.73 Total: -97.98 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.28 Total: -44.29 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -88.46 2.66 -85.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -88.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds