Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.55947 * 2 1 4 4 C 1.53067 * 117.51487 * 145.69761 * 2 1 3 5 5 C 1.52997 * 117.50166 * 214.30948 * 2 1 3 6 6 H 1.09003 * 117.49973 * 144.99505 * 5 2 1 7 7 C 1.53005 * 117.49719 * 359.97438 * 5 2 1 8 8 N 1.46499 * 109.47204 * 175.08779 * 7 5 2 9 9 C 1.34773 * 119.99954 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99944 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99950 * 180.02562 * 9 8 7 12 12 C 1.39945 * 120.00154 * 175.48139 * 11 9 8 13 13 C 1.38965 * 120.03421 * 35.11720 * 12 11 9 14 14 C 1.38156 * 120.06711 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13649 * 359.97438 * 14 13 12 16 16 C 1.38909 * 120.07099 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.03241 * 179.97438 * 16 15 14 18 18 C 1.34836 * 116.99578 * 185.30243 * 17 16 15 19 19 H 1.08001 * 120.00354 * 354.95783 * 18 17 16 20 20 C 1.38656 * 119.99633 * 174.95392 * 18 17 16 21 21 N 1.31559 * 119.99877 * 359.72268 * 20 18 17 22 22 Si 1.86801 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47234 * 90.00085 * 22 20 18 24 24 H 1.48497 * 109.47029 * 210.00080 * 22 20 18 25 25 H 1.48497 * 109.46958 * 329.99922 * 22 20 18 26 26 C 1.38704 * 120.03454 * 215.39783 * 12 11 9 27 27 H 1.08995 * 109.47024 * 205.69144 * 1 2 3 28 28 H 1.08999 * 109.46826 * 325.69474 * 1 2 3 29 29 H 1.08997 * 109.47179 * 85.68928 * 1 2 3 30 30 H 1.09000 * 117.51064 * 0.02562 * 4 2 1 31 31 H 1.08996 * 117.51710 * 214.95366 * 4 2 1 32 32 H 1.09003 * 109.47012 * 55.08535 * 7 5 2 33 33 H 1.09001 * 109.46871 * 295.08907 * 7 5 2 34 34 H 0.96997 * 119.99779 * 359.97438 * 8 7 5 35 35 H 0.96995 * 119.99818 * 355.47572 * 11 9 8 36 36 H 1.07997 * 119.96252 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.93277 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.96176 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99778 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.07261 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1214 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8750 -1.2686 7 6 1.3589 -2.1565 -1.4709 8 7 2.2060 -3.0723 -2.2391 9 6 1.6469 -4.0731 -2.9476 10 8 0.4394 -4.2163 -2.9489 11 7 2.4262 -4.9159 -3.6539 12 6 1.8554 -6.0108 -4.3126 13 6 0.5904 -5.9006 -4.8773 14 6 0.0260 -6.9813 -5.5272 15 6 0.7172 -8.1743 -5.6184 16 6 1.9820 -8.2907 -5.0561 17 8 2.6601 -9.4633 -5.1457 18 6 3.8330 -9.5440 -4.4855 19 1 4.2327 -8.6738 -3.9862 20 6 4.5259 -10.7444 -4.4476 21 7 4.0362 -11.8059 -5.0511 22 14 6.1505 -10.8566 -3.5324 23 1 5.8980 -11.2436 -2.1212 24 1 7.0133 -11.8777 -4.1789 25 1 6.8316 -9.5375 -3.5697 26 6 2.5492 -7.2088 -4.3975 27 1 -0.3633 -0.9260 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0772 -1.0247 30 1 1.6123 -1.8595 1.2680 31 1 3.1725 -0.8759 1.2680 32 1 0.6683 -1.6490 -2.1444 33 1 0.7939 -2.7205 -0.7287 34 1 3.1692 -2.9578 -2.2383 35 1 3.3827 -4.7635 -3.7058 36 1 0.0480 -4.9693 -4.8079 37 1 -0.9570 -6.8931 -5.9656 38 1 0.2731 -9.0173 -6.1268 39 1 4.5211 -12.6456 -5.0249 40 1 3.5305 -7.2985 -3.9551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048515439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -5.180176 kcal Electronic energy + Delta-G solvation = -21936.249141 eV Core-core repulsion = 18524.754118 eV Total energy + Delta-G solvation = -3411.495022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36832 -38.93032 -38.34406 -36.47919 -34.31804 -34.12297 -32.20316 -29.52972 -28.96250 -28.47875 -26.74350 -25.24875 -22.27189 -21.84642 -21.74275 -20.61762 -19.96729 -18.41412 -17.84997 -17.28653 -16.59858 -15.71034 -15.39879 -14.98485 -14.77008 -14.49952 -14.15687 -14.03325 -13.79850 -13.61765 -13.47009 -13.24491 -12.93128 -12.57468 -12.32434 -11.89814 -11.73299 -11.54070 -11.49226 -11.15082 -11.00065 -10.74906 -10.45208 -10.41251 -10.33468 -9.94121 -9.56032 -9.41255 -9.11603 -8.78029 -7.67620 -7.10355 -6.42629 -4.02293 2.10237 2.44545 2.67166 3.11970 3.13558 3.17659 3.33353 3.37179 3.97280 4.20672 4.24333 4.46567 4.51641 4.64696 4.87237 4.95436 5.11037 5.25740 5.33843 5.42352 5.45755 5.50980 5.55412 5.67416 5.73979 5.82640 5.94451 6.05780 6.13304 6.27916 6.30420 6.41294 6.60765 6.84040 7.04540 7.14955 7.32105 7.38601 7.46872 7.87466 8.01628 8.06310 8.66638 9.02877 9.74099 10.75607 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.003162 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.840681 B = 8851.890973 C =10118.525035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.143 4.143 3 H 0.106 0.894 4 C -0.173 4.173 5 C -0.168 4.168 6 H 0.110 0.890 7 C 0.172 3.828 8 N -0.746 5.746 9 C 0.703 3.297 10 O -0.572 6.572 11 N -0.682 5.682 12 C 0.195 3.805 13 C -0.204 4.204 14 C -0.065 4.065 15 C -0.201 4.201 16 C 0.168 3.832 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.257 4.257 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.402 0.598 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.269 0.731 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 21.243 8.199 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 H 0.124 0.876 4 C -0.210 4.210 5 C -0.186 4.186 6 H 0.128 0.872 7 C 0.048 3.952 8 N -0.402 5.402 9 C 0.403 3.597 10 O -0.448 6.448 11 N -0.329 5.329 12 C 0.102 3.898 13 C -0.225 4.225 14 C -0.084 4.084 15 C -0.221 4.221 16 C 0.114 3.886 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.279 4.279 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.236 0.764 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.200 20.685 8.096 22.321 hybrid contribution 1.981 0.117 0.567 2.064 sum -0.219 20.802 8.663 22.534 Atomic orbital electron populations 1.21400 0.92535 1.02305 1.02302 1.22379 0.95703 0.94253 1.03799 0.87597 1.23254 1.02721 1.01571 0.93488 1.22543 1.01487 1.00134 0.94464 0.87231 1.20670 0.91667 0.88753 0.94136 1.45087 1.10200 1.32217 1.52702 1.15895 0.85582 0.79484 0.78726 1.90932 1.12223 1.74029 1.67624 1.42548 1.10649 1.27235 1.52448 1.17198 0.93907 0.85080 0.93638 1.20721 0.96427 1.00428 1.04887 1.20554 0.98358 0.92076 0.97378 1.20255 0.94266 0.98963 1.08619 1.19049 0.90961 0.86335 0.92282 1.84010 1.32669 1.28481 1.62940 1.21268 0.95583 0.97744 1.32201 0.89279 1.25267 0.99635 0.94235 0.97378 1.70039 1.38462 1.00800 1.40539 0.85731 0.80111 0.78523 0.79133 1.19947 1.20281 1.19329 1.20798 1.03578 0.92046 1.11504 0.92143 0.92020 0.91805 0.88374 0.88661 0.91154 0.91393 0.77043 0.76352 0.85701 0.86659 0.86434 0.92068 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -0.92 6.41 -90.59 -0.58 -1.50 16 3 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.17 -1.16 9.83 -26.70 -0.26 -1.43 16 5 C -0.17 -1.20 5.85 -90.62 -0.53 -1.73 16 6 H 0.11 0.67 8.04 -51.93 -0.42 0.26 16 7 C 0.17 1.69 5.03 -4.04 -0.02 1.67 16 8 N -0.75 -8.13 5.56 -65.22 -0.36 -8.50 16 9 C 0.70 10.93 8.41 -86.92 -0.73 10.20 16 10 O -0.57 -11.09 13.78 5.28 0.07 -11.01 16 11 N -0.68 -10.59 5.34 -14.24 -0.08 -10.67 16 12 C 0.20 3.84 6.29 -83.71 -0.53 3.31 16 13 C -0.20 -4.05 8.69 -39.34 -0.34 -4.39 16 14 C -0.06 -1.26 10.03 -39.63 -0.40 -1.65 16 15 C -0.20 -4.41 9.99 -39.36 -0.39 -4.80 16 16 C 0.17 4.12 6.65 -39.13 -0.26 3.86 16 17 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 18 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 19 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.26 -5.65 9.08 -39.21 -0.36 -6.01 16 27 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.43 7.84 -51.93 -0.41 0.02 16 30 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 33 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 34 H 0.40 3.14 8.42 -40.82 -0.34 2.79 16 35 H 0.40 4.85 8.84 -40.82 -0.36 4.49 16 36 H 0.13 2.47 6.22 -52.49 -0.33 2.14 16 37 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -33.61 339.94 -8.68 -42.29 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.31 Total: 9.68 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.86 Total: -12.60 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.32 Total: -43.79 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.07 Total: -16.10 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.61 -8.68 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048515439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.106 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds