Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.55947 * 2 1 4 4 C 1.53067 * 117.51487 * 145.69761 * 2 1 3 5 5 C 1.52997 * 117.50166 * 214.30948 * 2 1 3 6 6 H 1.09003 * 117.49973 * 144.99505 * 5 2 1 7 7 C 1.53005 * 117.49719 * 359.97438 * 5 2 1 8 8 N 1.46499 * 109.47204 * 175.08779 * 7 5 2 9 9 C 1.34773 * 119.99954 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99944 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99950 * 180.02562 * 9 8 7 12 12 C 1.39945 * 120.00154 * 175.48139 * 11 9 8 13 13 C 1.38965 * 120.03421 * 35.11720 * 12 11 9 14 14 C 1.38156 * 120.06711 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13649 * 359.97438 * 14 13 12 16 16 C 1.38909 * 120.07099 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.03241 * 179.97438 * 16 15 14 18 18 C 1.34836 * 116.99578 * 185.30243 * 17 16 15 19 19 H 1.08001 * 120.00354 * 354.95783 * 18 17 16 20 20 C 1.38656 * 119.99633 * 174.95392 * 18 17 16 21 21 N 1.31559 * 119.99877 * 359.72268 * 20 18 17 22 22 Si 1.86801 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47234 * 90.00085 * 22 20 18 24 24 H 1.48497 * 109.47029 * 210.00080 * 22 20 18 25 25 H 1.48497 * 109.46958 * 329.99922 * 22 20 18 26 26 C 1.38704 * 120.03454 * 215.39783 * 12 11 9 27 27 H 1.08995 * 109.47024 * 205.69144 * 1 2 3 28 28 H 1.08999 * 109.46826 * 325.69474 * 1 2 3 29 29 H 1.08997 * 109.47179 * 85.68928 * 1 2 3 30 30 H 1.09000 * 117.51064 * 0.02562 * 4 2 1 31 31 H 1.08996 * 117.51710 * 214.95366 * 4 2 1 32 32 H 1.09003 * 109.47012 * 55.08535 * 7 5 2 33 33 H 1.09001 * 109.46871 * 295.08907 * 7 5 2 34 34 H 0.96997 * 119.99779 * 359.97438 * 8 7 5 35 35 H 0.96995 * 119.99818 * 355.47572 * 11 9 8 36 36 H 1.07997 * 119.96252 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.93277 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.96176 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99778 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.07261 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1214 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1714 -0.8750 -1.2686 7 6 1.3589 -2.1565 -1.4709 8 7 2.2060 -3.0723 -2.2391 9 6 1.6469 -4.0731 -2.9476 10 8 0.4394 -4.2163 -2.9489 11 7 2.4262 -4.9159 -3.6539 12 6 1.8554 -6.0108 -4.3126 13 6 0.5904 -5.9006 -4.8773 14 6 0.0260 -6.9813 -5.5272 15 6 0.7172 -8.1743 -5.6184 16 6 1.9820 -8.2907 -5.0561 17 8 2.6601 -9.4633 -5.1457 18 6 3.8330 -9.5440 -4.4855 19 1 4.2327 -8.6738 -3.9862 20 6 4.5259 -10.7444 -4.4476 21 7 4.0362 -11.8059 -5.0511 22 14 6.1505 -10.8566 -3.5324 23 1 5.8980 -11.2436 -2.1212 24 1 7.0133 -11.8777 -4.1789 25 1 6.8316 -9.5375 -3.5697 26 6 2.5492 -7.2088 -4.3975 27 1 -0.3633 -0.9260 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0772 -1.0247 30 1 1.6123 -1.8595 1.2680 31 1 3.1725 -0.8759 1.2680 32 1 0.6683 -1.6490 -2.1444 33 1 0.7939 -2.7205 -0.7287 34 1 3.1692 -2.9578 -2.2383 35 1 3.3827 -4.7635 -3.7058 36 1 0.0480 -4.9693 -4.8079 37 1 -0.9570 -6.8931 -5.9656 38 1 0.2731 -9.0173 -6.1268 39 1 4.5211 -12.6456 -5.0249 40 1 3.5305 -7.2985 -3.9551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048515439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -27.476262 kcal Electronic energy + Delta-G solvation = -21937.215972 eV Core-core repulsion = 18524.754118 eV Total energy + Delta-G solvation = -3412.461853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70619 -40.49340 -39.20312 -38.12957 -35.64794 -35.35001 -34.19962 -31.05350 -30.31341 -29.43118 -27.77134 -27.17521 -23.64897 -23.45929 -22.48492 -21.87920 -20.85569 -19.92386 -19.42050 -18.83386 -17.62788 -16.98522 -16.74322 -16.60689 -16.08559 -15.98446 -15.64482 -15.45112 -15.18499 -14.70398 -14.53891 -14.46576 -14.16239 -13.82139 -13.56379 -13.21010 -13.08084 -12.80090 -12.67544 -12.43472 -12.42404 -12.12905 -12.10887 -11.50766 -11.31903 -11.11489 -11.00798 -10.78150 -10.70726 -10.11973 -9.31637 -8.83993 -8.44894 -6.13626 0.46161 0.72853 1.36596 1.46210 1.51634 1.54205 2.04521 2.19083 2.77910 2.86245 3.17018 3.18956 3.52834 3.65096 3.90573 3.94947 4.13131 4.26027 4.35894 4.45281 4.47040 4.58033 4.66710 4.70824 4.76426 4.92104 4.94468 4.98427 5.04571 5.13215 5.14355 5.24236 5.36905 5.43405 5.45650 5.50007 5.69155 5.71853 5.96398 6.03557 6.22845 6.94726 6.99577 7.44181 7.79481 8.78236 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.003162 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.840681 B = 8851.890973 C =10118.525035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 H 0.121 0.879 4 C -0.174 4.174 5 C -0.168 4.168 6 H 0.127 0.873 7 C 0.172 3.828 8 N -0.723 5.723 9 C 0.700 3.300 10 O -0.611 6.611 11 N -0.673 5.673 12 C 0.203 3.797 13 C -0.199 4.199 14 C -0.053 4.053 15 C -0.214 4.214 16 C 0.134 3.866 17 O -0.226 6.226 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.249 1.249 26 C -0.259 4.259 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 24.112 9.486 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 H 0.139 0.861 4 C -0.211 4.211 5 C -0.186 4.186 6 H 0.145 0.855 7 C 0.048 3.952 8 N -0.380 5.380 9 C 0.400 3.600 10 O -0.491 6.491 11 N -0.321 5.321 12 C 0.108 3.892 13 C -0.220 4.220 14 C -0.071 4.071 15 C -0.234 4.234 16 C 0.083 3.917 17 O -0.133 6.133 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.172 1.172 26 C -0.281 4.281 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.251 0.749 35 H 0.258 0.742 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.108 23.647 9.404 25.473 hybrid contribution 1.439 -0.522 0.178 1.541 sum 0.331 23.125 9.582 25.034 Atomic orbital electron populations 1.21426 0.92912 1.02344 1.02159 1.22479 0.95511 0.94749 1.02935 0.86063 1.23302 1.03237 1.01481 0.93059 1.22480 1.01774 0.99748 0.94639 0.85517 1.20718 0.92032 0.88825 0.93603 1.44949 1.11346 1.30634 1.51059 1.16055 0.85049 0.80004 0.78863 1.90904 1.14030 1.75170 1.68967 1.42385 1.11669 1.26088 1.51987 1.17197 0.93684 0.85430 0.92933 1.21010 0.96412 1.00750 1.03863 1.20930 0.99442 0.90621 0.96128 1.20482 0.93839 1.00222 1.08893 1.19569 0.92059 0.86242 0.93851 1.83981 1.33711 1.30679 1.64905 1.21821 0.95882 0.98706 1.32497 0.87910 1.26598 1.03858 0.93456 0.98153 1.70192 1.40828 1.01694 1.43163 0.84585 0.74708 0.79404 0.77512 1.19143 1.19734 1.17198 1.20813 1.03800 0.92258 1.11253 0.93072 0.90911 0.92221 0.89243 0.87336 0.91857 0.92851 0.74919 0.74231 0.84910 0.82933 0.86292 0.91871 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.20 71.98 0.66 -0.84 16 2 C -0.14 -1.44 6.41 -10.77 -0.07 -1.51 16 3 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.17 -1.92 9.83 30.62 0.30 -1.62 16 5 C -0.17 -1.95 5.85 -10.79 -0.06 -2.02 16 6 H 0.13 1.08 8.04 -2.39 -0.02 1.06 16 7 C 0.17 3.09 5.03 86.38 0.43 3.52 16 8 N -0.72 -14.03 5.56 -478.52 -2.66 -16.69 16 9 C 0.70 20.40 8.41 179.06 1.51 21.91 16 10 O -0.61 -22.86 13.78 -4.01 -0.06 -22.91 16 11 N -0.67 -19.51 5.34 -317.22 -1.69 -21.20 16 12 C 0.20 7.70 6.29 38.13 0.24 7.94 16 13 C -0.20 -7.58 8.69 22.42 0.19 -7.39 16 14 C -0.05 -1.96 10.03 22.24 0.22 -1.74 16 15 C -0.21 -9.47 9.99 22.42 0.22 -9.25 16 16 C 0.13 6.76 6.65 22.56 0.15 6.91 16 17 O -0.23 -13.58 9.76 -22.78 -0.22 -13.80 16 18 C -0.41 -23.71 9.49 67.92 0.64 -23.07 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 21 N -0.92 -56.29 13.67 21.61 0.30 -55.99 16 22 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 26 C -0.26 -11.37 9.08 22.51 0.20 -11.17 16 27 H 0.05 0.67 7.90 -2.39 -0.02 0.65 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.73 7.84 -2.39 -0.02 0.71 16 30 H 0.09 1.15 7.94 -2.39 -0.02 1.14 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.26 7.77 -2.39 -0.02 1.24 16 33 H 0.05 1.14 7.87 -2.39 -0.02 1.12 16 34 H 0.41 5.20 8.42 -92.71 -0.78 4.42 16 35 H 0.42 9.05 8.84 -92.71 -0.82 8.23 16 36 H 0.13 4.95 6.22 -2.91 -0.02 4.94 16 37 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.13 5.55 5.63 -2.91 -0.02 5.54 16 Total: -1.00 -75.72 339.94 2.29 -73.43 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.52 Total: 32.25 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.12 Total: -19.16 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -4.06 Total: -93.89 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.28 Total: -36.71 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -75.72 2.29 -73.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048515439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.950 kcal (2) G-P(sol) polarization free energy of solvation -75.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds