Wall clock time and date at job start Tue Mar 31 2020 06:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21258 * 120.00144 * 2 1 4 4 C 1.47185 * 120.00006 * 180.02562 * 2 1 3 5 5 C 1.39895 * 120.13939 * 359.96986 * 4 2 1 6 6 C 1.37902 * 119.96638 * 180.02562 * 5 4 2 7 7 C 1.38301 * 120.25162 * 359.73469 * 6 5 4 8 8 C 1.38983 * 120.28029 * 0.54390 * 7 6 5 9 9 N 1.39983 * 119.98595 * 179.72582 * 8 7 6 10 10 C 1.34782 * 119.99794 * 214.83302 * 9 8 7 11 11 O 1.21578 * 120.00031 * 355.42563 * 10 9 8 12 12 N 1.34776 * 119.99618 * 175.42276 * 10 9 8 13 13 C 1.46503 * 120.00116 * 0.02562 * 12 10 9 14 14 C 1.46494 * 119.99790 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47398 * 359.97438 * 14 12 10 16 16 C 1.53004 * 109.47296 * 240.00021 * 14 12 10 17 17 C 1.50704 * 109.47136 * 119.99953 * 14 12 10 18 18 H 1.07996 * 120.00056 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99767 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00279 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99628 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47008 * 90.00178 * 21 19 17 23 23 H 1.48497 * 109.47082 * 210.00176 * 21 19 17 24 24 H 1.48500 * 109.47223 * 330.00379 * 21 19 17 25 25 C 1.38561 * 120.02840 * 359.45250 * 8 7 6 26 26 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47608 * 299.99984 * 1 2 3 28 28 H 1.09001 * 109.47301 * 59.99578 * 1 2 3 29 29 H 1.07997 * 120.01308 * 0.05690 * 5 4 2 30 30 H 1.08004 * 119.87418 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.86444 * 180.27479 * 7 6 5 32 32 H 0.96993 * 119.99882 * 34.83697 * 9 8 7 33 33 H 1.09000 * 109.47221 * 270.00282 * 13 12 10 34 34 H 1.09002 * 109.46841 * 30.00143 * 13 12 10 35 35 H 1.08999 * 109.46722 * 149.99909 * 13 12 10 36 36 H 1.08998 * 109.46871 * 300.00291 * 16 14 12 37 37 H 1.08997 * 109.46686 * 59.99884 * 16 14 12 38 38 H 1.08997 * 109.47061 * 180.02562 * 16 14 12 39 39 H 0.96995 * 120.00195 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.12568 * 180.24598 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5463 -2.4879 -0.0005 6 6 2.2395 -3.6801 -0.0005 7 6 3.6224 -3.6820 -0.0061 8 6 4.3249 -2.4827 -0.0004 9 7 5.7247 -2.4919 -0.0003 10 6 6.4048 -1.5413 0.6709 11 8 5.8057 -0.6291 1.2067 12 7 7.7490 -1.6022 0.7482 13 6 8.4708 -2.7012 0.1022 14 6 8.4881 -0.5694 1.4783 15 1 7.7874 0.1589 1.8866 16 6 9.4568 0.1342 0.5256 17 6 9.2633 -1.2065 2.6027 18 1 9.2110 -2.2740 2.7577 19 6 10.0402 -0.4266 3.4329 20 7 10.1044 0.8733 3.2439 21 14 11.0005 -1.2162 4.8271 22 1 12.3490 -1.6048 4.3414 23 1 11.1370 -0.2479 5.9447 24 1 10.2791 -2.4236 5.3035 25 6 3.6403 -1.2781 -0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.4664 -2.4908 -0.0009 30 1 1.7002 -4.6158 -0.0008 31 1 4.1590 -4.6193 -0.0106 32 1 6.2052 -3.1822 -0.4834 33 1 8.5752 -3.5292 0.8033 34 1 7.9155 -3.0351 -0.7743 35 1 9.4589 -2.3569 -0.2032 36 1 10.1575 -0.5938 0.1169 37 1 8.8960 0.5950 -0.2876 38 1 10.0070 0.9024 1.0689 39 1 10.6506 1.4220 3.8281 40 1 4.1846 -0.3453 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:54 Heat of formation + Delta-G solvation = -24.385644 kcal Electronic energy + Delta-G solvation = -22834.231144 eV Core-core repulsion = 19421.903310 eV Total energy + Delta-G solvation = -3412.327834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48063 -39.41477 -37.98703 -35.59652 -34.46980 -32.83070 -31.60475 -30.43296 -29.47887 -28.32430 -26.22433 -25.20883 -23.83114 -23.00732 -21.19462 -19.81673 -19.19491 -17.79004 -17.10996 -16.44043 -16.15629 -15.55554 -15.36138 -15.04661 -14.93656 -14.71385 -14.18008 -13.92505 -13.64506 -13.30113 -12.90193 -12.63209 -12.54316 -12.48837 -12.11473 -11.86922 -11.63707 -11.56458 -11.38397 -11.08165 -10.81986 -10.70333 -10.29637 -10.19381 -10.15489 -9.71094 -9.36421 -9.15839 -8.91239 -8.43301 -8.09737 -7.57580 -6.06892 -4.14973 0.68447 1.41602 2.42420 3.09617 3.26461 3.34012 3.37297 3.63985 3.95817 4.05628 4.35095 4.50781 4.75963 4.86968 4.98801 5.11867 5.24056 5.27827 5.33608 5.49042 5.49655 5.61485 5.79335 5.89409 5.95694 6.17805 6.27912 6.34129 6.41584 6.59372 6.71167 6.79973 6.97991 7.12566 7.12835 7.44875 7.57250 7.68261 7.79641 8.05149 8.20338 8.59202 8.85513 9.16273 9.51747 10.98488 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.003823 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.901349 B = 7322.763460 C = 7793.416771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.391 3.609 3 O -0.450 6.450 4 C -0.156 4.156 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.126 4.126 8 C 0.169 3.831 9 N -0.697 5.697 10 C 0.694 3.306 11 O -0.574 6.574 12 N -0.602 5.602 13 C 0.087 3.913 14 C 0.272 3.728 15 H 0.066 0.934 16 C -0.148 4.148 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.063 4.063 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.404 0.596 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.012 0.988 38 H 0.095 0.905 39 H 0.264 0.736 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 -10.511 -9.758 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.268 3.732 3 O -0.325 6.325 4 C -0.158 4.158 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.147 4.147 8 C 0.072 3.928 9 N -0.346 5.346 10 C 0.396 3.604 11 O -0.451 6.451 12 N -0.337 5.337 13 C -0.057 4.057 14 C 0.171 3.829 15 H 0.084 0.916 16 C -0.206 4.206 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.084 4.084 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.241 0.759 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.698 -9.070 -9.237 19.586 hybrid contribution 0.933 -1.062 0.582 1.529 sum -13.765 -10.131 -8.656 19.158 Atomic orbital electron populations 1.22223 0.93970 1.04630 1.04786 1.22494 0.91486 0.87789 0.71392 1.90589 1.72006 1.34275 1.35609 1.20423 0.94047 0.94845 1.06482 1.21359 0.99782 0.91477 0.99703 1.20816 0.93321 0.98034 1.01131 1.21127 0.94644 0.96629 1.02305 1.17506 0.82634 0.93480 0.99156 1.42989 1.03985 1.32735 1.54918 1.16020 0.82672 0.82164 0.79522 1.90900 1.67402 1.35282 1.51560 1.47619 1.02926 1.28165 1.54964 1.21512 0.98250 0.90502 0.95447 1.18927 0.90183 0.85176 0.88569 0.91627 1.22121 0.99525 1.01186 0.97816 1.21315 1.27781 0.94307 1.13107 0.92314 1.24888 0.96553 0.94814 0.97519 1.69876 1.39949 1.04110 1.38564 0.86480 0.79996 0.79099 0.81712 1.20631 1.21074 1.19984 1.21758 0.92912 0.99256 0.94470 0.89821 0.88882 0.88970 0.85138 0.85318 0.85482 0.75933 0.93163 0.93726 0.90301 0.95119 0.96872 0.88629 0.92639 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 10.19 36.00 0.37 -1.30 16 2 C 0.39 5.39 7.23 -30.68 -0.22 5.17 16 3 O -0.45 -8.26 17.09 5.58 0.10 -8.17 16 4 C -0.16 -2.19 5.87 -105.08 -0.62 -2.80 16 5 C -0.10 -1.07 9.45 -39.08 -0.37 -1.44 16 6 C -0.11 -1.12 10.02 -39.68 -0.40 -1.51 16 7 C -0.13 -1.46 9.96 -39.28 -0.39 -1.85 16 8 C 0.17 2.60 6.29 -83.74 -0.53 2.07 16 9 N -0.70 -11.26 5.22 -14.26 -0.07 -11.33 16 10 C 0.69 14.90 8.12 -86.91 -0.71 14.20 16 11 O -0.57 -14.77 13.10 5.30 0.07 -14.70 16 12 N -0.60 -12.92 2.75 -181.00 -0.50 -13.42 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.27 7.01 2.64 -69.08 -0.18 6.83 16 15 H 0.07 1.98 6.90 -51.93 -0.36 1.63 16 16 C -0.15 -3.56 8.95 37.16 0.33 -3.22 16 17 C -0.53 -14.31 8.37 -34.44 -0.29 -14.60 16 18 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.06 -1.09 8.24 -38.90 -0.32 -1.41 16 26 H 0.08 0.48 5.60 -51.93 -0.29 0.19 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.13 0.88 5.92 -52.49 -0.31 0.57 16 30 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.40 5.05 6.52 -40.82 -0.27 4.79 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.54 6.30 -51.93 -0.33 0.22 16 35 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 36 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.16 3.27 5.81 -52.49 -0.30 2.97 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -34.45 331.28 -7.58 -42.03 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.93 Total: 5.32 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.85 Total: 3.79 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.05 Total: -49.42 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.16 Total: -22.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.45 -7.58 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.644 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds