Wall clock time and date at job start Tue Mar 31 2020 06:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21258 * 120.00144 * 2 1 4 4 C 1.47185 * 120.00006 * 180.02562 * 2 1 3 5 5 C 1.39895 * 120.13939 * 359.96986 * 4 2 1 6 6 C 1.37902 * 119.96638 * 180.02562 * 5 4 2 7 7 C 1.38301 * 120.25162 * 359.73469 * 6 5 4 8 8 C 1.38983 * 120.28029 * 0.54390 * 7 6 5 9 9 N 1.39983 * 119.98595 * 179.72582 * 8 7 6 10 10 C 1.34782 * 119.99794 * 214.83302 * 9 8 7 11 11 O 1.21578 * 120.00031 * 355.42563 * 10 9 8 12 12 N 1.34776 * 119.99618 * 175.42276 * 10 9 8 13 13 C 1.46503 * 120.00116 * 0.02562 * 12 10 9 14 14 C 1.46494 * 119.99790 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47398 * 359.97438 * 14 12 10 16 16 C 1.53004 * 109.47296 * 240.00021 * 14 12 10 17 17 C 1.50704 * 109.47136 * 119.99953 * 14 12 10 18 18 H 1.07996 * 120.00056 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99767 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00279 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99628 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47008 * 90.00178 * 21 19 17 23 23 H 1.48497 * 109.47082 * 210.00176 * 21 19 17 24 24 H 1.48500 * 109.47223 * 330.00379 * 21 19 17 25 25 C 1.38561 * 120.02840 * 359.45250 * 8 7 6 26 26 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47608 * 299.99984 * 1 2 3 28 28 H 1.09001 * 109.47301 * 59.99578 * 1 2 3 29 29 H 1.07997 * 120.01308 * 0.05690 * 5 4 2 30 30 H 1.08004 * 119.87418 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.86444 * 180.27479 * 7 6 5 32 32 H 0.96993 * 119.99882 * 34.83697 * 9 8 7 33 33 H 1.09000 * 109.47221 * 270.00282 * 13 12 10 34 34 H 1.09002 * 109.46841 * 30.00143 * 13 12 10 35 35 H 1.08999 * 109.46722 * 149.99909 * 13 12 10 36 36 H 1.08998 * 109.46871 * 300.00291 * 16 14 12 37 37 H 1.08997 * 109.46686 * 59.99884 * 16 14 12 38 38 H 1.08997 * 109.47061 * 180.02562 * 16 14 12 39 39 H 0.96995 * 120.00195 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.12568 * 180.24598 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5463 -2.4879 -0.0005 6 6 2.2395 -3.6801 -0.0005 7 6 3.6224 -3.6820 -0.0061 8 6 4.3249 -2.4827 -0.0004 9 7 5.7247 -2.4919 -0.0003 10 6 6.4048 -1.5413 0.6709 11 8 5.8057 -0.6291 1.2067 12 7 7.7490 -1.6022 0.7482 13 6 8.4708 -2.7012 0.1022 14 6 8.4881 -0.5694 1.4783 15 1 7.7874 0.1589 1.8866 16 6 9.4568 0.1342 0.5256 17 6 9.2633 -1.2065 2.6027 18 1 9.2110 -2.2740 2.7577 19 6 10.0402 -0.4266 3.4329 20 7 10.1044 0.8733 3.2439 21 14 11.0005 -1.2162 4.8271 22 1 12.3490 -1.6048 4.3414 23 1 11.1370 -0.2479 5.9447 24 1 10.2791 -2.4236 5.3035 25 6 3.6403 -1.2781 -0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.4664 -2.4908 -0.0009 30 1 1.7002 -4.6158 -0.0008 31 1 4.1590 -4.6193 -0.0106 32 1 6.2052 -3.1822 -0.4834 33 1 8.5752 -3.5292 0.8033 34 1 7.9155 -3.0351 -0.7743 35 1 9.4589 -2.3569 -0.2032 36 1 10.1575 -0.5938 0.1169 37 1 8.8960 0.5950 -0.2876 38 1 10.0070 0.9024 1.0689 39 1 10.6506 1.4220 3.8281 40 1 4.1846 -0.3453 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:54 Heat of formation + Delta-G solvation = -48.086956 kcal Electronic energy + Delta-G solvation = -22835.258910 eV Core-core repulsion = 19421.903310 eV Total energy + Delta-G solvation = -3413.355600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82537 -40.69061 -39.19717 -37.31868 -35.94620 -34.73244 -32.65010 -31.73458 -30.89518 -29.47566 -27.71229 -27.30663 -24.82059 -24.36695 -22.68113 -20.97696 -20.80180 -19.18240 -18.57351 -18.13310 -17.50265 -16.94548 -16.72039 -16.35343 -16.26884 -16.02748 -15.72988 -15.12619 -14.99756 -14.64602 -14.46593 -14.18632 -13.68613 -13.51004 -13.35573 -13.07243 -13.03304 -12.94797 -12.74613 -12.72160 -12.62462 -12.36483 -12.22496 -12.13436 -11.51460 -11.21193 -10.99860 -10.78126 -10.54601 -9.94269 -9.54971 -9.03660 -8.16166 -6.33493 -0.32915 0.38698 1.39768 1.40883 1.42118 1.51659 1.68206 2.13708 2.40308 2.87891 2.96991 3.11637 3.17416 3.94589 4.06506 4.12338 4.25549 4.27616 4.44684 4.50878 4.59661 4.65976 4.69194 4.76784 4.84083 4.95414 4.97783 5.01190 5.11001 5.25450 5.37882 5.40894 5.42105 5.52594 5.54130 5.64029 5.94030 6.01780 6.11228 6.20509 6.56455 6.73939 7.03077 7.33879 7.57525 8.88496 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.003823 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.901349 B = 7322.763460 C = 7793.416771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.384 3.616 3 O -0.518 6.518 4 C -0.180 4.180 5 C -0.079 4.079 6 C -0.102 4.102 7 C -0.109 4.109 8 C 0.134 3.866 9 N -0.676 5.676 10 C 0.687 3.313 11 O -0.630 6.630 12 N -0.611 5.611 13 C 0.082 3.918 14 C 0.277 3.723 15 H 0.004 0.996 16 C -0.133 4.133 17 C -0.538 4.538 18 H 0.062 0.938 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.271 1.271 25 C -0.104 4.104 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.161 0.839 32 H 0.422 0.578 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.069 0.931 39 H 0.265 0.735 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.869 -15.150 -10.367 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.266 3.734 3 O -0.398 6.398 4 C -0.182 4.182 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.039 3.961 9 N -0.327 5.327 10 C 0.389 3.611 11 O -0.511 6.511 12 N -0.345 5.345 13 C -0.060 4.060 14 C 0.175 3.825 15 H 0.022 0.978 16 C -0.192 4.192 17 C -0.577 4.577 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.126 4.126 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.179 0.821 32 H 0.262 0.738 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.758 -13.800 -9.905 23.861 hybrid contribution 1.415 0.320 0.720 1.620 sum -15.343 -13.480 -9.185 22.394 Atomic orbital electron populations 1.22260 0.88943 1.07394 1.05796 1.23499 0.94198 0.86841 0.68872 1.90570 1.73811 1.36338 1.39039 1.20693 0.92887 0.96940 1.07639 1.21905 1.02038 0.89750 0.96007 1.21472 0.92536 0.99775 0.98230 1.21555 0.95784 0.95920 0.99702 1.17810 0.81992 0.94474 1.01865 1.42581 1.04565 1.31596 1.53979 1.16260 0.82690 0.82512 0.79664 1.90877 1.68582 1.37748 1.53943 1.47467 1.03208 1.28712 1.55085 1.21796 0.98357 0.88898 0.96928 1.18475 0.89146 0.85465 0.89436 0.97752 1.21902 0.99252 1.00830 0.97166 1.21563 1.27845 0.94478 1.13798 0.91956 1.25786 0.97573 0.95247 1.00026 1.70035 1.40632 1.05546 1.39564 0.85391 0.79000 0.77985 0.78229 1.18960 1.21247 1.19527 1.21506 0.94838 0.97996 0.98227 0.86113 0.88075 0.87443 0.80327 0.80157 0.82102 0.73765 0.92139 0.89338 0.90395 0.92854 0.96507 0.91203 0.92609 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 10.19 71.23 0.73 -1.94 16 2 C 0.38 10.94 7.23 28.04 0.20 11.15 16 3 O -0.52 -21.09 17.09 -2.96 -0.05 -21.14 16 4 C -0.18 -5.04 5.87 -20.16 -0.12 -5.16 16 5 C -0.08 -1.27 9.45 22.59 0.21 -1.05 16 6 C -0.10 -1.40 10.02 22.20 0.22 -1.18 16 7 C -0.11 -2.12 9.96 22.46 0.22 -1.89 16 8 C 0.13 4.13 6.29 38.09 0.24 4.37 16 9 N -0.68 -22.09 5.22 -317.29 -1.65 -23.75 16 10 C 0.69 31.29 8.12 179.05 1.45 32.75 16 11 O -0.63 -35.86 13.10 -3.96 -0.05 -35.91 16 12 N -0.61 -27.16 2.75 -844.84 -2.33 -29.48 16 13 C 0.08 2.57 9.48 127.77 1.21 3.78 16 14 C 0.28 15.14 2.64 44.25 0.12 15.26 16 15 H 0.00 0.30 6.90 -2.39 -0.02 0.28 16 16 C -0.13 -6.68 8.95 71.98 0.64 -6.04 16 17 C -0.54 -30.08 8.37 25.60 0.21 -29.87 16 18 H 0.06 3.35 7.65 -2.91 -0.02 3.33 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.92 -54.58 11.32 21.45 0.24 -54.34 16 21 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C -0.10 -3.89 8.24 22.71 0.19 -3.71 16 26 H 0.12 0.74 5.60 -2.39 -0.01 0.73 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.18 1.12 5.92 -2.91 -0.02 1.11 16 30 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.42 9.88 6.52 -92.71 -0.60 9.27 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.94 6.30 -2.39 -0.02 1.92 16 35 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 36 H 0.05 2.37 6.66 -2.39 -0.02 2.36 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.10 4.68 5.81 -2.91 -0.02 4.67 16 Total: -1.00 -87.86 331.28 4.65 -83.21 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.47 Total: 17.88 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 5.99 Total: 17.64 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.74 Total: -107.57 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.10 Total: -57.06 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -87.86 4.65 -83.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.127 kcal (2) G-P(sol) polarization free energy of solvation -87.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds