Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99840 * 2 1 4 4 C 1.46833 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.40066 * 120.09666 * 179.97438 * 4 2 1 6 6 C 1.36601 * 119.89520 * 180.02562 * 5 4 2 7 7 C 1.39223 * 120.10099 * 359.97438 * 6 5 4 8 8 N 1.39300 * 119.90043 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00087 * 324.54911 * 8 7 6 10 10 O 1.21581 * 119.99694 * 4.91620 * 9 8 7 11 11 N 1.34775 * 120.00159 * 184.91122 * 9 8 7 12 12 C 1.46499 * 120.00266 * 0.02562 * 11 9 8 13 13 C 1.46500 * 119.99788 * 179.97438 * 11 9 8 14 14 H 1.09006 * 109.47436 * 0.02562 * 13 11 9 15 15 C 1.53001 * 109.46960 * 120.00471 * 13 11 9 16 16 C 1.50702 * 109.47587 * 240.00506 * 13 11 9 17 17 H 1.08007 * 119.99427 * 355.45492 * 16 13 11 18 18 C 1.37871 * 120.00108 * 175.45130 * 16 13 11 19 19 N 1.31508 * 120.00517 * 353.18369 * 18 16 13 20 20 Si 1.86802 * 119.99815 * 173.46183 * 18 16 13 21 21 H 1.48504 * 109.47224 * 264.86403 * 20 18 16 22 22 H 1.48502 * 109.47088 * 24.86273 * 20 18 16 23 23 H 1.48503 * 109.47496 * 144.86409 * 20 18 16 24 24 C 1.39224 * 120.20563 * 0.27760 * 7 6 5 25 25 C 1.36599 * 120.09755 * 359.44336 * 24 7 6 26 26 H 1.09001 * 109.47334 * 240.00044 * 1 2 3 27 27 H 1.08998 * 109.47099 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 120.00165 * 1 2 3 29 29 H 1.07993 * 120.05413 * 0.02562 * 5 4 2 30 30 H 1.07992 * 119.95100 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00328 * 144.54847 * 8 7 6 32 32 H 1.09004 * 109.46131 * 269.99624 * 12 11 9 33 33 H 1.08996 * 109.46825 * 29.98754 * 12 11 9 34 34 H 1.08994 * 109.47461 * 149.99652 * 12 11 9 35 35 H 1.08992 * 109.47209 * 185.73714 * 15 13 11 36 36 H 1.08997 * 109.47121 * 305.74257 * 15 13 11 37 37 H 1.09005 * 109.47106 * 65.73682 * 15 13 11 38 38 H 0.97000 * 120.00292 * 180.27499 * 19 18 16 39 39 H 1.08000 * 119.95315 * 179.72821 * 24 7 6 40 40 H 1.08002 * 120.05340 * 180.27773 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.6418 -1.2740 0.0000 6 6 4.3206 -2.4594 0.0000 7 6 3.6224 -3.6639 0.0011 8 7 4.3188 -4.8703 0.0016 9 6 5.4789 -4.9790 -0.6757 10 8 5.9632 -4.0016 -1.2126 11 7 6.1022 -6.1712 -0.7578 12 6 5.5185 -7.3490 -0.1113 13 6 7.3630 -6.2894 -1.4946 14 1 7.6377 -5.3168 -1.9030 15 6 8.4632 -6.7738 -0.5482 16 6 7.1967 -7.2782 -2.6195 17 1 6.2708 -7.8240 -2.7263 18 6 8.2264 -7.4862 -3.5125 19 7 9.3005 -6.7288 -3.4656 20 14 8.0925 -8.8387 -4.7940 21 1 8.7588 -10.0663 -4.2895 22 1 6.6606 -9.1271 -5.0616 23 1 8.7518 -8.3981 -6.0496 24 6 2.2301 -3.6664 -0.0036 25 6 1.5430 -2.4859 0.0021 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 4.1843 -0.3402 -0.0004 30 1 5.4005 -2.4623 -0.0008 31 1 3.9689 -5.6322 0.4895 32 1 5.8952 -7.4277 0.9086 33 1 4.4330 -7.2519 -0.0911 34 1 5.7929 -8.2437 -0.6700 35 1 9.4206 -6.7645 -1.0690 36 1 8.5142 -6.1138 0.3178 37 1 8.2385 -7.7884 -0.2189 38 1 10.0232 -6.8725 -4.0964 39 1 1.6926 -4.6032 -0.0072 40 1 0.4629 -2.4887 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -30.882177 kcal Electronic energy + Delta-G solvation = -22546.116477 eV Core-core repulsion = 19133.506932 eV Total energy + Delta-G solvation = -3412.609545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57602 -39.56975 -38.04968 -35.62995 -34.53456 -32.84149 -31.60656 -30.76150 -29.61036 -28.38654 -26.28043 -25.24813 -23.84981 -22.65702 -21.45166 -19.91678 -19.28435 -18.06301 -17.17752 -16.65734 -16.28032 -15.58288 -15.27775 -15.06715 -14.90197 -14.32928 -14.27944 -13.96323 -13.55102 -13.39293 -12.90428 -12.82724 -12.58726 -12.56777 -12.31287 -12.21111 -11.78366 -11.64838 -11.21647 -11.06337 -10.97279 -10.78428 -10.34725 -10.23934 -10.17577 -9.86551 -9.40303 -9.26242 -9.00798 -8.47124 -8.13059 -7.65951 -6.13416 -4.19342 0.64194 1.45784 2.36123 3.03179 3.23156 3.31264 3.33480 3.58981 3.93729 4.03338 4.30390 4.42920 4.70934 4.88922 4.94618 5.18031 5.19424 5.21032 5.32561 5.44127 5.49433 5.60746 5.76784 5.84979 5.97656 6.14492 6.17866 6.33591 6.44157 6.60890 6.63283 6.66891 6.89266 7.02274 7.08351 7.34437 7.47994 7.61845 7.68493 7.92301 8.12317 8.50299 8.80575 9.07104 9.46539 10.94100 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.003217 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.714630 B = 8701.043751 C = 8795.569340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.468 6.468 4 C -0.211 4.211 5 C -0.037 4.037 6 C -0.138 4.138 7 C 0.219 3.781 8 N -0.694 5.694 9 C 0.694 3.306 10 O -0.573 6.573 11 N -0.601 5.601 12 C 0.081 3.919 13 C 0.270 3.730 14 H 0.071 0.929 15 C -0.141 4.141 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.285 1.285 24 C -0.173 4.173 25 C -0.050 4.050 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.150 0.850 31 H 0.405 0.595 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.015 0.985 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 3.467 10.074 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.345 6.345 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.159 4.159 7 C 0.120 3.880 8 N -0.342 5.342 9 C 0.396 3.604 10 O -0.450 6.450 11 N -0.335 5.335 12 C -0.063 4.063 13 C 0.170 3.830 14 H 0.089 0.911 15 C -0.200 4.200 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.194 4.194 25 C -0.069 4.069 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.242 0.758 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.275 4.630 9.535 18.592 hybrid contribution -0.265 -1.512 -0.536 1.626 sum -15.540 3.118 8.999 18.226 Atomic orbital electron populations 1.22241 0.94205 1.04815 1.04382 1.22365 0.91445 0.87747 0.70756 1.90536 1.72231 1.34444 1.37275 1.20374 0.94610 0.94492 1.11815 1.21072 0.92859 0.98506 0.93132 1.21212 1.02311 0.90423 1.01956 1.17916 0.90546 0.85837 0.93660 1.42972 1.24364 1.12910 1.53958 1.16012 0.79853 0.84895 0.79599 1.90890 1.65948 1.36522 1.51596 1.47636 1.26002 1.05238 1.54588 1.21592 0.96184 0.91133 0.97402 1.18943 0.76280 0.99515 0.88245 0.91130 1.22039 1.02256 0.98124 0.97543 1.21282 1.00589 1.23499 1.11627 0.92191 1.24888 0.95375 0.96198 0.97118 1.69944 1.07510 1.37446 1.37270 0.86506 0.78203 0.81893 0.80935 1.20600 1.19917 1.21089 1.20611 0.92154 0.99026 1.07601 1.20861 0.99581 0.90945 0.95468 0.88996 0.90013 0.88940 0.84940 0.83265 0.75765 0.93671 0.93409 0.89509 0.90270 0.96603 0.94753 0.92601 0.85310 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 8.92 36.01 0.32 -1.08 16 2 C 0.40 4.61 7.22 -30.83 -0.22 4.38 16 3 O -0.47 -7.11 17.07 5.55 0.09 -7.01 16 4 C -0.21 -2.58 5.87 -105.05 -0.62 -3.20 16 5 C -0.04 -0.53 9.55 -39.49 -0.38 -0.90 16 6 C -0.14 -2.20 8.62 -39.81 -0.34 -2.55 16 7 C 0.22 3.18 6.29 -83.73 -0.53 2.65 16 8 N -0.69 -10.45 5.14 -14.21 -0.07 -10.52 16 9 C 0.69 14.05 8.12 -86.92 -0.71 13.34 16 10 O -0.57 -13.86 13.09 5.29 0.07 -13.79 16 11 N -0.60 -12.22 2.75 -181.01 -0.50 -12.72 16 12 C 0.08 1.23 9.26 59.85 0.55 1.79 16 13 C 0.27 6.69 2.51 -69.08 -0.17 6.52 16 14 H 0.07 2.06 6.88 -51.93 -0.36 1.70 16 15 C -0.14 -3.22 8.86 37.16 0.33 -2.89 16 16 C -0.53 -13.99 8.01 -34.44 -0.28 -14.26 16 17 H 0.06 1.55 7.18 -52.48 -0.38 1.17 16 18 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 19 N -0.88 -24.90 12.01 55.43 0.67 -24.23 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.17 -1.93 9.90 -39.81 -0.39 -2.32 16 25 C -0.05 -0.50 9.42 -39.49 -0.37 -0.87 16 26 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.08 0.57 8.12 -51.93 -0.42 0.14 16 28 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.13 1.87 7.64 -52.49 -0.40 1.47 16 30 H 0.15 2.72 6.21 -52.49 -0.33 2.39 16 31 H 0.41 4.67 6.62 -40.82 -0.27 4.40 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.56 6.44 -51.93 -0.33 0.23 16 34 H 0.09 1.42 6.93 -51.93 -0.36 1.06 16 35 H 0.08 1.98 6.86 -51.93 -0.36 1.63 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.83 7.03 -52.49 -0.37 0.46 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -32.84 335.33 -7.83 -40.67 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.22 Total: 4.59 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.90 Total: 2.33 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.09 Total: -47.48 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.80 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.84 -7.83 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.783 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds