Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99840 * 2 1 4 4 C 1.46833 * 119.99876 * 179.97438 * 2 1 3 5 5 C 1.40066 * 120.09666 * 179.97438 * 4 2 1 6 6 C 1.36601 * 119.89520 * 180.02562 * 5 4 2 7 7 C 1.39223 * 120.10099 * 359.97438 * 6 5 4 8 8 N 1.39300 * 119.90043 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00087 * 324.54911 * 8 7 6 10 10 O 1.21581 * 119.99694 * 4.91620 * 9 8 7 11 11 N 1.34775 * 120.00159 * 184.91122 * 9 8 7 12 12 C 1.46499 * 120.00266 * 0.02562 * 11 9 8 13 13 C 1.46500 * 119.99788 * 179.97438 * 11 9 8 14 14 H 1.09006 * 109.47436 * 0.02562 * 13 11 9 15 15 C 1.53001 * 109.46960 * 120.00471 * 13 11 9 16 16 C 1.50702 * 109.47587 * 240.00506 * 13 11 9 17 17 H 1.08007 * 119.99427 * 355.45492 * 16 13 11 18 18 C 1.37871 * 120.00108 * 175.45130 * 16 13 11 19 19 N 1.31508 * 120.00517 * 353.18369 * 18 16 13 20 20 Si 1.86802 * 119.99815 * 173.46183 * 18 16 13 21 21 H 1.48504 * 109.47224 * 264.86403 * 20 18 16 22 22 H 1.48502 * 109.47088 * 24.86273 * 20 18 16 23 23 H 1.48503 * 109.47496 * 144.86409 * 20 18 16 24 24 C 1.39224 * 120.20563 * 0.27760 * 7 6 5 25 25 C 1.36599 * 120.09755 * 359.44336 * 24 7 6 26 26 H 1.09001 * 109.47334 * 240.00044 * 1 2 3 27 27 H 1.08998 * 109.47099 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 120.00165 * 1 2 3 29 29 H 1.07993 * 120.05413 * 0.02562 * 5 4 2 30 30 H 1.07992 * 119.95100 * 179.97438 * 6 5 4 31 31 H 0.97004 * 120.00328 * 144.54847 * 8 7 6 32 32 H 1.09004 * 109.46131 * 269.99624 * 12 11 9 33 33 H 1.08996 * 109.46825 * 29.98754 * 12 11 9 34 34 H 1.08994 * 109.47461 * 149.99652 * 12 11 9 35 35 H 1.08992 * 109.47209 * 185.73714 * 15 13 11 36 36 H 1.08997 * 109.47121 * 305.74257 * 15 13 11 37 37 H 1.09005 * 109.47106 * 65.73682 * 15 13 11 38 38 H 0.97000 * 120.00292 * 180.27499 * 19 18 16 39 39 H 1.08000 * 119.95315 * 179.72821 * 24 7 6 40 40 H 1.08002 * 120.05340 * 180.27773 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.6418 -1.2740 0.0000 6 6 4.3206 -2.4594 0.0000 7 6 3.6224 -3.6639 0.0011 8 7 4.3188 -4.8703 0.0016 9 6 5.4789 -4.9790 -0.6757 10 8 5.9632 -4.0016 -1.2126 11 7 6.1022 -6.1712 -0.7578 12 6 5.5185 -7.3490 -0.1113 13 6 7.3630 -6.2894 -1.4946 14 1 7.6377 -5.3168 -1.9030 15 6 8.4632 -6.7738 -0.5482 16 6 7.1967 -7.2782 -2.6195 17 1 6.2708 -7.8240 -2.7263 18 6 8.2264 -7.4862 -3.5125 19 7 9.3005 -6.7288 -3.4656 20 14 8.0925 -8.8387 -4.7940 21 1 8.7588 -10.0663 -4.2895 22 1 6.6606 -9.1271 -5.0616 23 1 8.7518 -8.3981 -6.0496 24 6 2.2301 -3.6664 -0.0036 25 6 1.5430 -2.4859 0.0021 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 4.1843 -0.3402 -0.0004 30 1 5.4005 -2.4623 -0.0008 31 1 3.9689 -5.6322 0.4895 32 1 5.8952 -7.4277 0.9086 33 1 4.4330 -7.2519 -0.0911 34 1 5.7929 -8.2437 -0.6700 35 1 9.4206 -6.7645 -1.0690 36 1 8.5142 -6.1138 0.3178 37 1 8.2385 -7.7884 -0.2189 38 1 10.0232 -6.8725 -4.0964 39 1 1.6926 -4.6032 -0.0072 40 1 0.4629 -2.4887 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -52.098801 kcal Electronic energy + Delta-G solvation = -22547.036499 eV Core-core repulsion = 19133.506932 eV Total energy + Delta-G solvation = -3413.529567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86699 -40.70468 -39.21341 -37.26927 -35.94512 -34.67895 -32.60643 -31.92729 -31.08598 -29.40453 -27.64706 -27.27554 -25.03391 -23.69198 -23.00914 -21.02392 -20.69200 -19.40747 -18.64228 -18.12886 -17.64525 -16.97769 -16.74824 -16.31025 -15.96408 -15.92570 -15.34430 -15.03623 -14.99849 -14.60300 -14.34772 -14.07055 -13.85615 -13.69261 -13.57293 -13.10495 -12.99240 -12.93670 -12.88824 -12.75490 -12.61358 -12.28548 -12.21929 -12.08552 -11.48076 -11.21190 -11.04773 -10.69889 -10.52692 -10.04534 -9.54065 -9.04710 -8.16738 -6.30914 -0.37137 0.46525 1.37990 1.41920 1.43031 1.53038 1.68331 2.14495 2.41951 2.86976 3.03312 3.13694 3.21028 3.82123 3.96427 4.24016 4.30253 4.36164 4.40383 4.56345 4.67692 4.70769 4.73236 4.76697 4.83967 4.94713 4.99168 5.01354 5.14742 5.23961 5.28008 5.40099 5.46643 5.47941 5.54237 5.65649 5.90338 5.97497 6.08866 6.21621 6.61103 6.77765 7.02349 7.35509 7.57027 8.90233 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.003217 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.714630 B = 8701.043751 C = 8795.569340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.396 3.604 3 O -0.517 6.517 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.164 4.164 7 C 0.193 3.807 8 N -0.672 5.672 9 C 0.688 3.312 10 O -0.626 6.626 11 N -0.608 5.608 12 C 0.075 3.925 13 C 0.276 3.724 14 H 0.012 0.988 15 C -0.125 4.125 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.015 3.985 19 N -0.921 5.921 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.266 1.266 23 H -0.290 1.290 24 C -0.155 4.155 25 C -0.028 4.028 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.425 0.575 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.170 0.830 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.761 1.208 10.863 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.278 3.722 3 O -0.397 6.397 4 C -0.216 4.216 5 C -0.076 4.076 6 C -0.184 4.184 7 C 0.096 3.904 8 N -0.322 5.322 9 C 0.390 3.610 10 O -0.506 6.506 11 N -0.342 5.342 12 C -0.067 4.067 13 C 0.173 3.827 14 H 0.030 0.970 15 C -0.184 4.184 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.190 1.190 23 H -0.216 1.216 24 C -0.176 4.176 25 C -0.047 4.047 26 H 0.142 0.858 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.266 0.734 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.188 0.812 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -19.857 2.328 10.382 22.528 hybrid contribution 1.063 -0.708 -0.731 1.471 sum -18.794 1.620 9.651 21.189 Atomic orbital electron populations 1.22283 0.89596 1.05894 1.06976 1.23102 0.93787 0.86455 0.68825 1.90534 1.73668 1.35863 1.39605 1.20708 0.93518 0.96519 1.10901 1.21025 0.94604 0.97337 0.94670 1.20967 1.00728 0.92296 1.04444 1.18178 0.92140 0.84653 0.95434 1.42542 1.22571 1.13923 1.53155 1.16220 0.80928 0.84118 0.79707 1.90869 1.67624 1.38299 1.53825 1.47475 1.25085 1.06998 1.54650 1.21887 0.98545 0.88424 0.97841 1.18491 0.78928 0.96180 0.89072 0.96993 1.21817 1.00209 0.99353 0.97052 1.21588 1.00692 1.23383 1.12090 0.91616 1.25764 0.95061 0.98359 0.99332 1.70099 1.08367 1.39170 1.38304 0.85442 0.78464 0.79175 0.77914 1.19290 1.19024 1.21616 1.21041 0.90155 1.01320 1.05075 1.21412 1.01989 0.88991 0.92276 0.85795 0.90011 0.86311 0.86610 0.87236 0.73420 0.91258 0.89404 0.90483 0.93029 0.95608 0.92745 0.92708 0.81211 0.79671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.92 71.24 0.64 -1.18 16 2 C 0.40 8.47 7.22 27.94 0.20 8.68 16 3 O -0.52 -15.95 17.07 -3.07 -0.05 -16.00 16 4 C -0.21 -4.90 5.87 -20.14 -0.12 -5.02 16 5 C -0.06 -1.75 9.55 22.33 0.21 -1.54 16 6 C -0.16 -5.58 8.62 22.12 0.19 -5.39 16 7 C 0.19 5.44 6.29 38.43 0.24 5.68 16 8 N -0.67 -19.48 5.14 -317.14 -1.63 -21.11 16 9 C 0.69 28.58 8.12 179.05 1.45 30.04 16 10 O -0.63 -32.61 13.09 -3.97 -0.05 -32.66 16 11 N -0.61 -24.89 2.75 -844.85 -2.33 -27.21 16 12 C 0.08 2.10 9.26 127.77 1.18 3.29 16 13 C 0.28 14.15 2.51 44.25 0.11 14.26 16 14 H 0.01 0.76 6.88 -2.38 -0.02 0.74 16 15 C -0.13 -5.87 8.86 71.98 0.64 -5.24 16 16 C -0.54 -28.76 8.01 25.60 0.20 -28.55 16 17 H 0.07 3.35 7.18 -2.91 -0.02 3.33 16 18 C 0.01 0.80 5.26 84.65 0.45 1.24 16 19 N -0.92 -53.80 12.01 21.44 0.26 -53.54 16 20 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 C -0.16 -2.80 9.90 22.12 0.22 -2.58 16 25 C -0.03 -0.43 9.42 22.33 0.21 -0.22 16 26 H 0.12 0.46 8.08 -2.39 -0.02 0.44 16 27 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 28 H 0.12 0.59 8.08 -2.39 -0.02 0.57 16 29 H 0.12 3.74 7.64 -2.91 -0.02 3.72 16 30 H 0.11 4.55 6.21 -2.91 -0.02 4.53 16 31 H 0.42 8.43 6.62 -92.70 -0.61 7.82 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.72 6.44 -2.39 -0.02 1.71 16 34 H 0.08 2.34 6.93 -2.39 -0.02 2.32 16 35 H 0.05 2.68 6.86 -2.39 -0.02 2.67 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 2.27 7.86 -2.38 -0.02 2.25 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.19 0.87 7.03 -2.91 -0.02 0.85 16 Total: -1.00 -80.23 335.33 4.51 -75.73 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.45 Total: 16.78 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.83 Total: 13.48 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.70 Total: -101.86 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.10 Total: -48.66 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -80.23 4.51 -75.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.630 kcal (2) G-P(sol) polarization free energy of solvation -80.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds