Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21295 * 120.00215 * 2 1 4 4 C 1.46833 * 119.99636 * 180.02562 * 2 1 3 5 5 C 1.40061 * 120.09785 * 180.02562 * 4 2 1 6 6 C 1.36603 * 119.89838 * 180.02562 * 5 4 2 7 7 C 1.39218 * 120.10062 * 359.97438 * 6 5 4 8 8 N 1.39293 * 119.89865 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00221 * 326.41411 * 8 7 6 10 10 O 1.21578 * 119.99524 * 354.69415 * 9 8 7 11 11 N 1.34774 * 120.00042 * 174.69813 * 9 8 7 12 12 C 1.46497 * 120.00142 * 359.97438 * 11 9 8 13 13 C 1.46503 * 119.99745 * 179.97438 * 11 9 8 14 14 H 1.09002 * 109.47196 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47015 * 239.99963 * 13 11 9 16 16 C 1.50698 * 109.47133 * 119.99889 * 13 11 9 17 17 H 1.08003 * 119.99680 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00263 * 179.97438 * 16 13 11 19 19 N 1.31513 * 119.99807 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00256 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47037 * 270.00295 * 20 18 16 22 22 H 1.48502 * 109.47105 * 29.99933 * 20 18 16 23 23 H 1.48500 * 109.47425 * 149.99916 * 20 18 16 24 24 C 1.39228 * 120.19970 * 0.27452 * 7 6 5 25 25 C 1.36594 * 120.10398 * 359.44811 * 24 7 6 26 26 H 1.09000 * 109.46790 * 270.00270 * 1 2 3 27 27 H 1.08999 * 109.46934 * 29.99910 * 1 2 3 28 28 H 1.08997 * 109.46768 * 150.00041 * 1 2 3 29 29 H 1.08010 * 120.05362 * 359.97438 * 5 4 2 30 30 H 1.07999 * 119.94796 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00333 * 146.41573 * 8 7 6 32 32 H 1.09006 * 109.47186 * 270.00230 * 12 11 9 33 33 H 1.08998 * 109.47048 * 29.99985 * 12 11 9 34 34 H 1.09002 * 109.47527 * 150.00015 * 12 11 9 35 35 H 1.08996 * 109.47332 * 60.00441 * 15 13 11 36 36 H 1.08998 * 109.46987 * 180.02562 * 15 13 11 37 37 H 1.09002 * 109.46991 * 299.99944 * 15 13 11 38 38 H 0.97000 * 120.00189 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.94287 * 179.72527 * 24 7 6 40 40 H 1.08004 * 120.05252 * 180.27199 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.6418 -1.2741 0.0000 6 6 4.3206 -2.4596 -0.0011 7 6 3.6224 -3.6640 -0.0022 8 7 4.3188 -4.8703 -0.0027 9 6 5.4981 -4.9674 -0.6480 10 8 5.9077 -4.0332 -1.3095 11 7 6.2232 -6.1000 -0.5600 12 6 5.7298 -7.2255 0.2375 13 6 7.5048 -6.2057 -1.2619 14 1 7.7030 -5.2776 -1.7981 15 6 7.4471 -7.3665 -2.2568 16 6 8.6055 -6.4543 -0.2631 17 1 8.3735 -6.5268 0.7892 18 6 9.9085 -6.5903 -0.6928 19 7 10.1907 -6.5035 -1.9743 20 14 11.2728 -6.8991 0.5452 21 1 11.8233 -5.6004 1.0095 22 1 10.7280 -7.6490 1.7055 23 1 12.3518 -7.6936 -0.0951 24 6 2.2301 -3.6664 -0.0079 25 6 1.5429 -2.4859 -0.0012 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.1844 -0.3402 0.0004 30 1 5.4006 -2.4624 -0.0011 31 1 3.9551 -5.6406 0.4613 32 1 6.0908 -7.1310 1.2617 33 1 4.6398 -7.2226 0.2348 34 1 6.0917 -8.1604 -0.1904 35 1 6.6510 -7.1867 -2.9793 36 1 8.4008 -7.4454 -2.7787 37 1 7.2487 -8.2948 -1.7210 38 1 11.1074 -6.5995 -2.2767 39 1 1.6926 -4.6031 -0.0132 40 1 0.4629 -2.4887 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = -28.203978 kcal Electronic energy + Delta-G solvation = -22549.631773 eV Core-core repulsion = 19137.138364 eV Total energy + Delta-G solvation = -3412.493409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58889 -39.57863 -38.05763 -35.64873 -34.55009 -32.88343 -31.64171 -30.76044 -29.53846 -28.35792 -26.31933 -25.26804 -23.86115 -22.68150 -21.43027 -19.90971 -19.25152 -18.08851 -17.21464 -16.66733 -16.22351 -15.69399 -15.20601 -15.08467 -14.96277 -14.36620 -14.23296 -13.98144 -13.59730 -13.31381 -13.02787 -12.74834 -12.68520 -12.60060 -12.32583 -12.18123 -11.68570 -11.61128 -11.19511 -11.09882 -10.89625 -10.78251 -10.34258 -10.22095 -10.15166 -9.85588 -9.49938 -9.22205 -9.02790 -8.48194 -8.10924 -7.65041 -6.12155 -4.20486 0.63834 1.44970 2.35231 3.02631 3.24505 3.31462 3.33022 3.57619 3.95608 4.02787 4.27918 4.42222 4.68997 4.86208 4.90242 5.17274 5.19086 5.24963 5.31715 5.41562 5.47924 5.59069 5.74785 5.88861 5.97016 6.12328 6.14812 6.31128 6.43823 6.60693 6.65259 6.72991 6.91003 7.05952 7.06894 7.36509 7.48100 7.62191 7.71683 7.98496 8.13701 8.49798 8.79574 9.05697 9.46482 10.93204 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003266 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.187349 B = 8571.065271 C = 9002.867387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.469 6.469 4 C -0.212 4.212 5 C -0.034 4.034 6 C -0.139 4.139 7 C 0.222 3.778 8 N -0.693 5.693 9 C 0.694 3.306 10 O -0.573 6.573 11 N -0.601 5.601 12 C 0.086 3.914 13 C 0.272 3.728 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.285 1.285 24 C -0.175 4.175 25 C -0.049 4.049 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.405 0.595 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.012 0.988 36 H 0.096 0.904 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.989 2.359 5.414 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.346 6.346 4 C -0.214 4.214 5 C -0.053 4.053 6 C -0.159 4.159 7 C 0.124 3.876 8 N -0.342 5.342 9 C 0.396 3.604 10 O -0.450 6.450 11 N -0.335 5.335 12 C -0.058 4.058 13 C 0.172 3.828 14 H 0.084 0.916 15 C -0.207 4.207 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.197 4.197 25 C -0.068 4.068 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.243 0.757 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.070 3.446 4.774 19.005 hybrid contribution 0.565 -0.923 0.905 1.411 sum -17.505 2.524 5.679 18.575 Atomic orbital electron populations 1.22230 0.94260 1.04692 1.04509 1.22353 0.91419 0.87760 0.70739 1.90538 1.72163 1.34473 1.37391 1.20364 0.94572 0.94513 1.11984 1.21050 0.92861 0.98455 0.92957 1.21087 1.02082 0.90508 1.02270 1.17904 0.90587 0.85851 0.93278 1.43035 1.22449 1.12380 1.56309 1.16014 0.79673 0.84383 0.80361 1.90908 1.70645 1.38204 1.45228 1.47662 1.22735 1.12096 1.51007 1.21532 0.96435 0.91673 0.96175 1.18940 0.76327 0.97020 0.90546 0.91634 1.22124 1.01956 0.98126 0.98493 1.21304 0.91545 1.50304 0.93469 0.92261 1.24885 0.98542 0.94916 0.95391 1.69872 1.19761 1.49439 1.13444 0.86475 0.81436 0.78306 0.81041 1.20560 1.19948 1.21092 1.20575 0.92053 0.99017 1.08010 1.20895 0.99593 0.90953 0.95341 0.88677 0.89691 0.89597 0.84905 0.83636 0.75743 0.93012 0.93694 0.90230 0.96893 0.88591 0.95066 0.92591 0.85326 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 9.75 36.01 0.35 -1.04 16 2 C 0.40 4.60 7.22 -30.83 -0.22 4.38 16 3 O -0.47 -7.13 17.08 5.54 0.09 -7.03 16 4 C -0.21 -2.59 5.87 -105.05 -0.62 -3.21 16 5 C -0.03 -0.50 9.54 -39.49 -0.38 -0.87 16 6 C -0.14 -2.24 8.58 -39.81 -0.34 -2.58 16 7 C 0.22 3.23 6.27 -83.74 -0.53 2.70 16 8 N -0.69 -10.44 5.19 -14.21 -0.07 -10.52 16 9 C 0.69 14.02 8.01 -86.92 -0.70 13.32 16 10 O -0.57 -13.86 13.34 5.30 0.07 -13.78 16 11 N -0.60 -12.27 2.75 -181.01 -0.50 -12.76 16 12 C 0.09 1.32 9.49 59.85 0.57 1.89 16 13 C 0.27 6.75 2.64 -69.08 -0.18 6.56 16 14 H 0.07 1.90 6.90 -51.93 -0.36 1.55 16 15 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 16 C -0.53 -13.92 8.37 -34.44 -0.29 -14.20 16 17 H 0.06 1.54 7.65 -52.48 -0.40 1.14 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 20 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 C -0.18 -1.92 9.90 -39.81 -0.39 -2.32 16 25 C -0.05 -0.48 9.31 -39.49 -0.37 -0.85 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.43 6.45 -51.93 -0.34 0.09 16 29 H 0.13 1.90 7.64 -52.48 -0.40 1.50 16 30 H 0.15 2.73 6.41 -52.49 -0.34 2.40 16 31 H 0.40 4.67 6.51 -40.82 -0.27 4.40 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.51 6.29 -51.93 -0.33 0.18 16 34 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 37 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.13 0.81 6.34 -52.48 -0.33 0.48 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -32.65 332.01 -7.65 -40.30 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.00 Total: 4.83 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.85 Total: 2.33 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.06 Total: -47.35 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.17 Total: -20.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.65 -7.65 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.096 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds