Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21295 * 120.00215 * 2 1 4 4 C 1.46833 * 119.99636 * 180.02562 * 2 1 3 5 5 C 1.40061 * 120.09785 * 180.02562 * 4 2 1 6 6 C 1.36603 * 119.89838 * 180.02562 * 5 4 2 7 7 C 1.39218 * 120.10062 * 359.97438 * 6 5 4 8 8 N 1.39293 * 119.89865 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00221 * 326.41411 * 8 7 6 10 10 O 1.21578 * 119.99524 * 354.69415 * 9 8 7 11 11 N 1.34774 * 120.00042 * 174.69813 * 9 8 7 12 12 C 1.46497 * 120.00142 * 359.97438 * 11 9 8 13 13 C 1.46503 * 119.99745 * 179.97438 * 11 9 8 14 14 H 1.09002 * 109.47196 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47015 * 239.99963 * 13 11 9 16 16 C 1.50698 * 109.47133 * 119.99889 * 13 11 9 17 17 H 1.08003 * 119.99680 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00263 * 179.97438 * 16 13 11 19 19 N 1.31513 * 119.99807 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00256 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47037 * 270.00295 * 20 18 16 22 22 H 1.48502 * 109.47105 * 29.99933 * 20 18 16 23 23 H 1.48500 * 109.47425 * 149.99916 * 20 18 16 24 24 C 1.39228 * 120.19970 * 0.27452 * 7 6 5 25 25 C 1.36594 * 120.10398 * 359.44811 * 24 7 6 26 26 H 1.09000 * 109.46790 * 270.00270 * 1 2 3 27 27 H 1.08999 * 109.46934 * 29.99910 * 1 2 3 28 28 H 1.08997 * 109.46768 * 150.00041 * 1 2 3 29 29 H 1.08010 * 120.05362 * 359.97438 * 5 4 2 30 30 H 1.07999 * 119.94796 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00333 * 146.41573 * 8 7 6 32 32 H 1.09006 * 109.47186 * 270.00230 * 12 11 9 33 33 H 1.08998 * 109.47048 * 29.99985 * 12 11 9 34 34 H 1.09002 * 109.47527 * 150.00015 * 12 11 9 35 35 H 1.08996 * 109.47332 * 60.00441 * 15 13 11 36 36 H 1.08998 * 109.46987 * 180.02562 * 15 13 11 37 37 H 1.09002 * 109.46991 * 299.99944 * 15 13 11 38 38 H 0.97000 * 120.00189 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.94287 * 179.72527 * 24 7 6 40 40 H 1.08004 * 120.05252 * 180.27199 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.6418 -1.2741 0.0000 6 6 4.3206 -2.4596 -0.0011 7 6 3.6224 -3.6640 -0.0022 8 7 4.3188 -4.8703 -0.0027 9 6 5.4981 -4.9674 -0.6480 10 8 5.9077 -4.0332 -1.3095 11 7 6.2232 -6.1000 -0.5600 12 6 5.7298 -7.2255 0.2375 13 6 7.5048 -6.2057 -1.2619 14 1 7.7030 -5.2776 -1.7981 15 6 7.4471 -7.3665 -2.2568 16 6 8.6055 -6.4543 -0.2631 17 1 8.3735 -6.5268 0.7892 18 6 9.9085 -6.5903 -0.6928 19 7 10.1907 -6.5035 -1.9743 20 14 11.2728 -6.8991 0.5452 21 1 11.8233 -5.6004 1.0095 22 1 10.7280 -7.6490 1.7055 23 1 12.3518 -7.6936 -0.0951 24 6 2.2301 -3.6664 -0.0079 25 6 1.5429 -2.4859 -0.0012 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.1844 -0.3402 0.0004 30 1 5.4006 -2.4624 -0.0011 31 1 3.9551 -5.6406 0.4613 32 1 6.0908 -7.1310 1.2617 33 1 4.6398 -7.2226 0.2348 34 1 6.0917 -8.1604 -0.1904 35 1 6.6510 -7.1867 -2.9793 36 1 8.4008 -7.4454 -2.7787 37 1 7.2487 -8.2948 -1.7210 38 1 11.1074 -6.5995 -2.2767 39 1 1.6926 -4.6031 -0.0132 40 1 0.4629 -2.4887 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = -49.404727 kcal Electronic energy + Delta-G solvation = -22550.551106 eV Core-core repulsion = 19137.138364 eV Total energy + Delta-G solvation = -3413.412743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88445 -40.71663 -39.22411 -37.29852 -35.96468 -34.72321 -32.63818 -31.91335 -31.03029 -29.39120 -27.71223 -27.29361 -25.04458 -23.72002 -22.98980 -21.02696 -20.65873 -19.43346 -18.64874 -18.21399 -17.60642 -17.01370 -16.77363 -16.29713 -16.03394 -15.92962 -15.35512 -15.08011 -14.89482 -14.62052 -14.46615 -14.22916 -13.79901 -13.69798 -13.49245 -13.06398 -12.98693 -12.94306 -12.92205 -12.73681 -12.63332 -12.20867 -12.18718 -12.10992 -11.47989 -11.23163 -11.09794 -10.71142 -10.54316 -10.06177 -9.53644 -9.04199 -8.16043 -6.32646 -0.37776 0.45417 1.34952 1.40541 1.42401 1.51546 1.69061 2.13316 2.40306 2.87089 3.00334 3.12328 3.20751 3.80147 3.94289 4.21975 4.27264 4.33858 4.40245 4.53783 4.60540 4.70709 4.74711 4.77024 4.88019 4.95011 4.99241 5.03911 5.14697 5.20986 5.27031 5.38839 5.43992 5.51671 5.53924 5.64526 5.95317 5.96605 6.12629 6.20084 6.61221 6.74817 7.01029 7.34244 7.55187 8.88206 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003266 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.187349 B = 8571.065271 C = 9002.867387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.396 3.604 3 O -0.518 6.518 4 C -0.216 4.216 5 C -0.055 4.055 6 C -0.165 4.165 7 C 0.197 3.803 8 N -0.672 5.672 9 C 0.689 3.311 10 O -0.625 6.625 11 N -0.609 5.609 12 C 0.080 3.920 13 C 0.277 3.723 14 H 0.009 0.991 15 C -0.133 4.133 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.964 3.036 21 H -0.285 1.285 22 H -0.260 1.260 23 H -0.279 1.279 24 C -0.155 4.155 25 C -0.027 4.027 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.425 0.575 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.173 0.827 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.042 0.537 7.020 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.279 3.721 3 O -0.398 6.398 4 C -0.218 4.218 5 C -0.074 4.074 6 C -0.186 4.186 7 C 0.100 3.900 8 N -0.322 5.322 9 C 0.391 3.609 10 O -0.506 6.506 11 N -0.342 5.342 12 C -0.062 4.062 13 C 0.175 3.825 14 H 0.027 0.973 15 C -0.192 4.192 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.789 3.211 21 H -0.211 1.211 22 H -0.184 1.184 23 H -0.205 1.205 24 C -0.176 4.176 25 C -0.045 4.045 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.266 0.734 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.190 0.810 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.196 1.583 6.429 23.163 hybrid contribution 1.729 -0.263 0.410 1.796 sum -20.467 1.320 6.839 21.620 Atomic orbital electron populations 1.22271 0.89576 1.06408 1.06493 1.23101 0.93788 0.86453 0.68784 1.90535 1.73620 1.35907 1.39706 1.20704 0.93406 0.96623 1.11052 1.20988 0.94665 0.97195 0.94563 1.20820 1.00266 0.92534 1.05009 1.18164 0.92239 0.84559 0.95048 1.42600 1.20654 1.13413 1.55529 1.16208 0.80849 0.83548 0.80334 1.90880 1.72210 1.39974 1.47520 1.47494 1.21583 1.13734 1.51431 1.21821 0.99420 0.89555 0.95386 1.18485 0.78471 0.94853 0.90694 0.97326 1.21898 1.00764 0.98350 0.98186 1.21576 0.92374 1.49999 0.93747 0.92113 1.25717 1.00892 0.94738 0.97073 1.70017 1.20177 1.50218 1.15199 0.85468 0.78549 0.77927 0.79133 1.21115 1.18435 1.20483 1.21026 0.89937 1.01393 1.05227 1.21464 1.02045 0.88963 0.92064 0.86207 0.89425 0.86477 0.86716 0.88046 0.73402 0.92522 0.88859 0.90299 0.96032 0.91305 0.92956 0.92607 0.80962 0.79470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 9.75 71.24 0.69 -1.08 16 2 C 0.40 8.45 7.22 27.94 0.20 8.65 16 3 O -0.52 -15.99 17.08 -3.08 -0.05 -16.04 16 4 C -0.22 -4.92 5.87 -20.14 -0.12 -5.04 16 5 C -0.06 -1.70 9.54 22.33 0.21 -1.49 16 6 C -0.17 -5.73 8.58 22.12 0.19 -5.54 16 7 C 0.20 5.55 6.27 38.43 0.24 5.79 16 8 N -0.67 -19.48 5.19 -317.14 -1.65 -21.13 16 9 C 0.69 28.63 8.01 179.05 1.43 30.06 16 10 O -0.63 -32.57 13.34 -3.96 -0.05 -32.62 16 11 N -0.61 -25.09 2.75 -844.86 -2.33 -27.42 16 12 C 0.08 2.30 9.49 127.77 1.21 3.51 16 13 C 0.28 14.32 2.64 44.24 0.12 14.43 16 14 H 0.01 0.55 6.90 -2.39 -0.02 0.53 16 15 C -0.13 -6.30 8.95 71.98 0.64 -5.66 16 16 C -0.54 -29.07 8.37 25.60 0.21 -28.86 16 17 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 18 C 0.02 0.85 5.30 84.65 0.45 1.29 16 19 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 20 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 C -0.16 -2.71 9.90 22.12 0.22 -2.49 16 25 C -0.03 -0.40 9.31 22.33 0.21 -0.19 16 26 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.12 0.37 6.45 -2.39 -0.02 0.35 16 29 H 0.11 3.77 7.64 -2.91 -0.02 3.75 16 30 H 0.10 4.35 6.41 -2.91 -0.02 4.33 16 31 H 0.42 8.41 6.51 -92.71 -0.60 7.80 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.73 6.29 -2.39 -0.02 1.71 16 34 H 0.08 2.28 6.43 -2.39 -0.02 2.27 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 37 H 0.05 2.19 6.66 -2.39 -0.02 2.18 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.19 0.76 6.34 -2.91 -0.02 0.74 16 Total: -1.00 -80.17 332.01 4.58 -75.58 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.47 Total: 15.81 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.92 Total: 13.40 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.73 Total: -101.17 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.11 Total: -48.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.17 4.58 -75.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.179 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds