Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 O 1.42901 * 109.46826 * 240.00179 * 2 1 3 5 5 C 1.35509 * 117.00041 * 209.99715 * 4 2 1 6 6 C 1.39155 * 119.51381 * 179.72628 * 5 4 2 7 7 C 1.36953 * 119.40228 * 179.76922 * 6 5 4 8 8 C 1.40320 * 118.46579 * 0.50125 * 7 6 5 9 9 C 1.47503 * 120.50289 * 179.76865 * 8 7 6 10 10 O 1.21620 * 120.00090 * 137.26851 * 9 8 7 11 11 N 1.34779 * 119.99883 * 317.27072 * 9 8 7 12 12 C 1.36905 * 119.99955 * 184.40521 * 11 9 8 13 13 H 1.08007 * 119.99600 * 135.13658 * 12 11 9 14 14 C 1.39021 * 120.00441 * 315.14251 * 12 11 9 15 15 N 1.31380 * 120.00101 * 165.45048 * 14 12 11 16 16 Si 1.86801 * 119.99836 * 345.44474 * 14 12 11 17 17 H 1.48502 * 109.46931 * 95.85138 * 16 14 12 18 18 H 1.48499 * 109.47239 * 215.84973 * 16 14 12 19 19 H 1.48503 * 109.47262 * 335.85141 * 16 14 12 20 20 C 1.46501 * 120.00063 * 4.41266 * 11 9 8 21 21 C 1.52999 * 117.49726 * 182.55138 * 20 11 9 22 22 C 1.52994 * 117.50045 * 113.92830 * 20 11 9 23 23 C 1.39610 * 118.99660 * 359.74347 * 8 7 6 24 24 N 1.31694 * 120.49431 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47170 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46600 * 299.99608 * 1 2 3 28 28 H 1.08998 * 109.47170 * 120.00125 * 2 1 3 29 29 H 1.09002 * 109.46487 * 60.00413 * 3 2 1 30 30 H 1.09003 * 109.47125 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47286 * 300.00665 * 3 2 1 32 32 H 1.08003 * 120.29590 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.76785 * 180.22124 * 7 6 5 34 34 H 0.97005 * 120.00150 * 179.97438 * 15 14 12 35 35 H 1.09003 * 115.54360 * 328.26224 * 20 11 9 36 36 H 1.08996 * 117.50196 * 359.97438 * 21 20 11 37 37 H 1.08997 * 117.49383 * 145.02033 * 21 20 11 38 38 H 1.09002 * 117.49913 * 214.98041 * 22 20 11 39 39 H 1.09001 * 117.49901 * 359.97438 * 22 20 11 40 40 H 1.08007 * 119.75115 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.1972 -1.3122 -1.0655 6 6 3.7076 -1.9899 -2.1685 7 6 4.9137 -2.6305 -2.0650 8 6 5.5904 -2.5878 -0.8365 9 6 6.8899 -3.2664 -0.6735 10 8 7.7940 -2.7136 -0.0769 11 7 7.0753 -4.4992 -1.1860 12 6 8.2490 -5.1659 -0.9579 13 1 8.2320 -6.2084 -0.6763 14 6 9.4629 -4.5010 -1.0886 15 7 10.5604 -5.0356 -0.6030 16 14 9.5336 -2.8474 -1.9547 17 1 9.4703 -1.7580 -0.9476 18 1 10.8029 -2.7424 -2.7183 19 1 8.3838 -2.7273 -2.8868 20 6 6.0208 -5.1256 -1.9871 21 6 6.2675 -6.5492 -2.4905 22 6 6.3120 -5.3734 -3.4685 23 6 5.0154 -1.8928 0.2291 24 7 3.8552 -1.2870 0.0835 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1596 -2.0071 -3.0990 33 1 5.3321 -3.1601 -2.9081 34 1 11.4075 -4.5719 -0.6945 35 1 5.0003 -4.8581 -1.7127 36 1 7.2146 -7.0195 -2.2260 37 1 5.4093 -7.2187 -2.5472 38 1 5.4831 -5.2695 -4.1687 39 1 7.2881 -5.0700 -3.8472 40 1 5.5256 -1.8525 1.1802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = 8.673445 kcal Electronic energy + Delta-G solvation = -23424.309726 eV Core-core repulsion = 20013.415441 eV Total energy + Delta-G solvation = -3410.894284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72145 -39.32868 -37.81766 -36.50076 -33.38364 -33.02154 -32.59857 -31.46763 -30.05125 -27.44704 -25.53032 -24.07547 -23.35676 -22.03173 -21.65697 -20.97911 -19.66689 -18.45105 -17.65150 -16.57765 -16.43018 -15.73544 -15.42814 -14.85991 -14.60847 -14.56313 -14.00599 -13.72879 -13.47798 -13.42391 -13.21586 -12.99921 -12.56667 -12.49855 -12.43599 -12.30778 -12.00870 -11.62467 -11.21243 -11.05907 -10.85639 -10.77076 -10.36723 -10.19557 -10.13316 -9.88122 -9.61007 -9.45452 -8.78528 -8.57136 -8.26057 -7.58966 -6.27157 -4.09469 1.14360 1.38170 2.99410 3.21215 3.43574 3.61833 3.70400 3.98345 4.23994 4.38663 4.41589 4.61286 4.71112 4.82072 4.97807 5.06933 5.10443 5.13954 5.27062 5.33629 5.35695 5.38458 5.51420 5.54080 5.63260 5.64881 5.70451 5.85765 5.90736 6.03392 6.06765 6.09570 6.23237 6.37454 6.52942 6.59838 6.79127 7.30619 7.73109 7.86274 7.96154 8.64110 8.75841 9.29691 9.66286 10.75646 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.004742 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.177101 B = 5903.345617 C = 6519.704328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.168 4.168 4 O -0.303 6.303 5 C 0.321 3.679 6 C -0.195 4.195 7 C -0.026 4.026 8 C -0.189 4.189 9 C 0.494 3.506 10 O -0.538 6.538 11 N -0.422 5.422 12 C -0.345 4.345 13 H 0.100 0.900 14 C 0.089 3.911 15 N -0.863 5.863 16 Si 0.927 3.073 17 H -0.256 1.256 18 H -0.313 1.313 19 H -0.284 1.284 20 C 0.057 3.943 21 C -0.169 4.169 22 C -0.202 4.202 23 C 0.180 3.820 24 N -0.542 5.542 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.275 0.725 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 6.229 -3.138 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.211 6.211 5 C 0.142 3.858 6 C -0.216 4.216 7 C -0.052 4.052 8 C -0.195 4.195 9 C 0.285 3.715 10 O -0.422 6.422 11 N -0.140 5.140 12 C -0.470 4.470 13 H 0.118 0.882 14 C -0.121 4.121 15 N -0.497 5.497 16 Si 0.759 3.241 17 H -0.182 1.182 18 H -0.244 1.244 19 H -0.210 1.210 20 C -0.049 4.049 21 C -0.206 4.206 22 C -0.240 4.240 23 C 0.024 3.976 24 N -0.265 5.265 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.766 6.950 -2.293 19.214 hybrid contribution 0.511 0.336 -1.026 1.194 sum -17.255 7.286 -3.319 19.022 Atomic orbital electron populations 1.21900 0.93083 1.02902 1.02785 1.22324 0.94207 0.92791 0.88321 1.22212 1.02395 0.95663 1.02317 1.86232 1.31912 1.64401 1.38542 1.19943 0.85912 0.89931 0.90042 1.20684 0.98339 1.03550 0.98997 1.21638 0.92198 0.93847 0.97481 1.21141 0.98750 1.03859 0.95729 1.17914 0.86678 0.84080 0.82858 1.90591 1.42086 1.64625 1.44865 1.43013 1.14402 1.14070 1.42536 1.18823 0.80831 0.97690 1.49689 0.88244 1.25431 0.94502 0.98709 0.93445 1.69690 0.99673 1.40049 1.40269 0.86025 0.75291 0.84856 0.77894 1.18210 1.24383 1.20967 1.21985 0.92651 0.98443 0.91816 1.23160 1.03941 0.90755 1.02762 1.23352 1.03213 1.04521 0.92950 1.22516 0.88257 0.88387 0.98465 1.67324 1.10746 1.24201 1.24229 0.91777 0.91863 0.90619 0.89136 0.91230 0.91831 0.92159 0.84156 0.83304 0.91559 0.86891 0.86917 0.89308 0.89239 0.88361 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 2 C 0.08 0.89 3.10 -26.73 -0.08 0.81 16 3 C -0.17 -1.72 9.53 37.16 0.35 -1.36 16 4 O -0.30 -4.10 9.75 -18.22 -0.18 -4.27 16 5 C 0.32 4.86 7.46 -16.95 -0.13 4.73 16 6 C -0.20 -2.78 9.97 -39.71 -0.40 -3.18 16 7 C -0.03 -0.42 7.64 -39.26 -0.30 -0.72 16 8 C -0.19 -3.64 5.22 -104.83 -0.55 -4.19 16 9 C 0.49 11.79 5.61 -12.48 -0.07 11.72 16 10 O -0.54 -14.86 12.00 5.26 0.06 -14.79 16 11 N -0.42 -9.93 2.48 -108.91 -0.27 -10.19 16 12 C -0.34 -9.39 8.58 -15.00 -0.13 -9.52 16 13 H 0.10 2.82 7.20 -52.48 -0.38 2.44 16 14 C 0.09 2.57 4.99 -17.45 -0.09 2.48 16 15 N -0.86 -25.82 13.95 55.50 0.77 -25.04 16 16 Si 0.93 24.73 24.46 -169.99 -4.16 20.57 16 17 H -0.26 -7.23 6.31 56.52 0.36 -6.88 16 18 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 19 H -0.28 -7.25 7.05 56.52 0.40 -6.85 16 20 C 0.06 1.04 4.40 -67.93 -0.30 0.74 16 21 C -0.17 -2.79 9.80 -26.73 -0.26 -3.05 16 22 C -0.20 -3.27 9.40 -26.73 -0.25 -3.52 16 23 C 0.18 3.18 10.84 -17.10 -0.19 3.00 16 24 N -0.54 -8.76 8.62 -12.93 -0.11 -8.87 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.15 2.30 5.63 -52.49 -0.30 2.01 16 34 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.11 1.83 6.17 -51.93 -0.32 1.51 16 36 H 0.11 2.14 6.60 -51.93 -0.34 1.80 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.17 2.83 8.06 -52.48 -0.42 2.41 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -32.36 328.12 -6.49 -38.85 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.53 Total: 1.76 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.03 Total: -2.94 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.39 Total: -44.11 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.11 Total: -19.07 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.16 Total: 20.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.36 -6.49 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds