Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 O 1.42901 * 109.46826 * 240.00179 * 2 1 3 5 5 C 1.35509 * 117.00041 * 209.99715 * 4 2 1 6 6 C 1.39155 * 119.51381 * 179.72628 * 5 4 2 7 7 C 1.36953 * 119.40228 * 179.76922 * 6 5 4 8 8 C 1.40320 * 118.46579 * 0.50125 * 7 6 5 9 9 C 1.47503 * 120.50289 * 179.76865 * 8 7 6 10 10 O 1.21620 * 120.00090 * 137.26851 * 9 8 7 11 11 N 1.34779 * 119.99883 * 317.27072 * 9 8 7 12 12 C 1.36905 * 119.99955 * 184.40521 * 11 9 8 13 13 H 1.08007 * 119.99600 * 135.13658 * 12 11 9 14 14 C 1.39021 * 120.00441 * 315.14251 * 12 11 9 15 15 N 1.31380 * 120.00101 * 165.45048 * 14 12 11 16 16 Si 1.86801 * 119.99836 * 345.44474 * 14 12 11 17 17 H 1.48502 * 109.46931 * 95.85138 * 16 14 12 18 18 H 1.48499 * 109.47239 * 215.84973 * 16 14 12 19 19 H 1.48503 * 109.47262 * 335.85141 * 16 14 12 20 20 C 1.46501 * 120.00063 * 4.41266 * 11 9 8 21 21 C 1.52999 * 117.49726 * 182.55138 * 20 11 9 22 22 C 1.52994 * 117.50045 * 113.92830 * 20 11 9 23 23 C 1.39610 * 118.99660 * 359.74347 * 8 7 6 24 24 N 1.31694 * 120.49431 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47170 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46600 * 299.99608 * 1 2 3 28 28 H 1.08998 * 109.47170 * 120.00125 * 2 1 3 29 29 H 1.09002 * 109.46487 * 60.00413 * 3 2 1 30 30 H 1.09003 * 109.47125 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47286 * 300.00665 * 3 2 1 32 32 H 1.08003 * 120.29590 * 0.02562 * 6 5 4 33 33 H 1.08001 * 120.76785 * 180.22124 * 7 6 5 34 34 H 0.97005 * 120.00150 * 179.97438 * 15 14 12 35 35 H 1.09003 * 115.54360 * 328.26224 * 20 11 9 36 36 H 1.08996 * 117.50196 * 359.97438 * 21 20 11 37 37 H 1.08997 * 117.49383 * 145.02033 * 21 20 11 38 38 H 1.09002 * 117.49913 * 214.98041 * 22 20 11 39 39 H 1.09001 * 117.49901 * 359.97438 * 22 20 11 40 40 H 1.08007 * 119.75115 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.1972 -1.3122 -1.0655 6 6 3.7076 -1.9899 -2.1685 7 6 4.9137 -2.6305 -2.0650 8 6 5.5904 -2.5878 -0.8365 9 6 6.8899 -3.2664 -0.6735 10 8 7.7940 -2.7136 -0.0769 11 7 7.0753 -4.4992 -1.1860 12 6 8.2490 -5.1659 -0.9579 13 1 8.2320 -6.2084 -0.6763 14 6 9.4629 -4.5010 -1.0886 15 7 10.5604 -5.0356 -0.6030 16 14 9.5336 -2.8474 -1.9547 17 1 9.4703 -1.7580 -0.9476 18 1 10.8029 -2.7424 -2.7183 19 1 8.3838 -2.7273 -2.8868 20 6 6.0208 -5.1256 -1.9871 21 6 6.2675 -6.5492 -2.4905 22 6 6.3120 -5.3734 -3.4685 23 6 5.0154 -1.8928 0.2291 24 7 3.8552 -1.2870 0.0835 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1596 -2.0071 -3.0990 33 1 5.3321 -3.1601 -2.9081 34 1 11.4075 -4.5719 -0.6945 35 1 5.0003 -4.8581 -1.7127 36 1 7.2146 -7.0195 -2.2260 37 1 5.4093 -7.2187 -2.5472 38 1 5.4831 -5.2695 -4.1687 39 1 7.2881 -5.0700 -3.8472 40 1 5.5256 -1.8525 1.1802 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -13.634917 kcal Electronic energy + Delta-G solvation = -23425.277089 eV Core-core repulsion = 20013.415441 eV Total energy + Delta-G solvation = -3411.861647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04527 -40.86398 -39.05255 -38.14191 -35.01583 -34.26853 -33.97993 -33.27257 -31.39984 -28.17610 -27.38436 -25.30626 -24.85777 -23.40772 -23.01743 -22.04835 -21.41114 -19.57396 -19.41363 -18.15177 -17.80173 -17.33881 -16.75250 -16.50572 -15.85226 -15.75221 -15.38089 -15.22047 -15.12329 -14.87240 -14.66655 -14.44490 -14.00784 -13.80444 -13.43265 -13.27300 -13.16604 -12.94837 -12.86007 -12.44989 -12.19713 -12.08650 -11.92362 -11.80085 -11.63121 -11.35356 -11.01511 -10.83025 -10.78113 -10.48335 -9.60742 -9.42686 -8.46315 -6.26500 -0.19926 0.13772 1.18503 1.29296 1.48103 1.84828 1.95528 2.38585 2.48270 2.71869 2.90410 3.16749 3.18557 3.66170 3.83036 3.90828 4.01089 4.02057 4.04300 4.05761 4.16475 4.29050 4.29989 4.61875 4.69461 4.74627 4.83113 4.87129 4.87273 4.93189 4.95434 5.08506 5.20584 5.21923 5.27880 5.35227 5.45552 5.63970 5.82324 6.17839 6.62896 6.69920 6.78453 7.23174 7.73596 8.60318 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.004742 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.177101 B = 5903.345617 C = 6519.704328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 C -0.165 4.165 4 O -0.301 6.301 5 C 0.325 3.675 6 C -0.179 4.179 7 C -0.016 4.016 8 C -0.215 4.215 9 C 0.494 3.506 10 O -0.587 6.587 11 N -0.436 5.436 12 C -0.336 4.336 13 H 0.078 0.922 14 C 0.045 3.955 15 N -0.907 5.907 16 Si 0.971 3.029 17 H -0.286 1.286 18 H -0.309 1.309 19 H -0.266 1.266 20 C 0.034 3.966 21 C -0.164 4.164 22 C -0.182 4.182 23 C 0.180 3.820 24 N -0.545 5.545 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.274 0.726 35 H 0.142 0.858 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.120 7.139 -5.212 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.223 4.223 4 O -0.208 6.208 5 C 0.145 3.855 6 C -0.199 4.199 7 C -0.042 4.042 8 C -0.221 4.221 9 C 0.286 3.714 10 O -0.474 6.474 11 N -0.154 5.154 12 C -0.463 4.463 13 H 0.095 0.905 14 C -0.159 4.159 15 N -0.545 5.545 16 Si 0.804 3.196 17 H -0.214 1.214 18 H -0.240 1.240 19 H -0.191 1.191 20 C -0.070 4.070 21 C -0.202 4.202 22 C -0.220 4.220 23 C 0.024 3.976 24 N -0.269 5.269 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -22.069 7.840 -4.406 23.830 hybrid contribution 1.566 0.114 -0.307 1.600 sum -20.502 7.954 -4.713 22.490 Atomic orbital electron populations 1.21902 0.90524 1.03395 1.04209 1.22626 0.96138 0.92792 0.86983 1.22200 1.00806 0.95434 1.03825 1.86260 1.30808 1.64041 1.39698 1.20307 0.86111 0.89174 0.89872 1.21004 0.97332 1.01578 1.00009 1.21707 0.92417 0.93741 0.96289 1.20767 0.97349 1.05944 0.98014 1.18622 0.87778 0.83778 0.81221 1.90543 1.44200 1.65963 1.46671 1.43148 1.14460 1.14048 1.43763 1.18689 0.82240 0.96824 1.48513 0.90478 1.25981 0.94745 1.00717 0.94485 1.69763 1.00202 1.41422 1.43090 0.85294 0.75865 0.81670 0.76796 1.21399 1.23964 1.19096 1.22307 0.92131 0.99655 0.92909 1.23204 1.03934 0.90672 1.02376 1.23435 1.03616 1.02814 0.92128 1.22413 0.88780 0.88306 0.98141 1.67362 1.10161 1.24151 1.25219 0.91002 0.91850 0.88569 0.90389 0.89186 0.94211 0.91276 0.80259 0.82080 0.91629 0.84074 0.90304 0.85251 0.84269 0.91033 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.56 71.98 0.69 -1.16 16 2 C 0.07 1.36 3.10 30.60 0.09 1.46 16 3 C -0.17 -2.94 9.53 71.98 0.69 -2.25 16 4 O -0.30 -7.04 9.75 -88.11 -0.86 -7.90 16 5 C 0.33 8.77 7.46 84.82 0.63 9.40 16 6 C -0.18 -4.28 9.97 22.19 0.22 -4.06 16 7 C -0.02 -0.47 7.64 22.47 0.17 -0.30 16 8 C -0.21 -8.02 5.22 -20.00 -0.10 -8.13 16 9 C 0.49 23.79 5.61 86.69 0.49 24.28 16 10 O -0.59 -33.58 12.00 -4.10 -0.05 -33.63 16 11 N -0.44 -20.59 2.48 -616.72 -1.53 -22.11 16 12 C -0.34 -18.94 8.58 84.09 0.72 -18.22 16 13 H 0.08 4.60 7.20 -2.91 -0.02 4.58 16 14 C 0.05 2.72 4.99 84.95 0.42 3.15 16 15 N -0.91 -56.97 13.95 21.68 0.30 -56.67 16 16 Si 0.97 52.65 24.46 68.60 1.68 54.33 16 17 H -0.29 -16.78 6.31 99.48 0.63 -16.15 16 18 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 19 H -0.27 -13.33 7.05 99.48 0.70 -12.63 16 20 C 0.03 1.17 4.40 44.99 0.20 1.36 16 21 C -0.16 -5.08 9.80 30.59 0.30 -4.78 16 22 C -0.18 -5.27 9.40 30.59 0.29 -4.98 16 23 C 0.18 6.27 10.84 85.04 0.92 7.19 16 24 N -0.55 -16.71 8.62 -307.69 -2.65 -19.36 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.08 1.73 6.97 -2.39 -0.02 1.71 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.16 4.27 5.63 -2.91 -0.02 4.25 16 34 H 0.27 16.31 8.31 -92.70 -0.77 15.54 16 35 H 0.14 4.04 6.17 -2.39 -0.01 4.03 16 36 H 0.08 3.01 6.60 -2.39 -0.02 3.00 16 37 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -74.89 328.12 3.58 -71.31 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.96 Total: 11.06 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.73 Total: 2.96 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.88 Total: -98.15 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.91 Total: -41.53 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 1.68 Total: 54.33 kcal Total: -74.89 3.58 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.678 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds