Wall clock time and date at job start Tue Mar 31 2020 06:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31518 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47309 * 120.00017 * 8 6 4 11 11 H 1.48505 * 109.47010 * 240.00115 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21583 * 120.00271 * 359.97438 * 13 12 2 15 15 C 1.47615 * 119.99726 * 179.72725 * 13 12 2 16 16 C 1.40278 * 120.49847 * 180.27478 * 15 13 12 17 17 C 1.37952 * 118.35904 * 179.97438 * 16 15 13 18 18 C 1.39176 * 119.26224 * 0.02562 * 17 16 15 19 19 O 1.35501 * 119.52058 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99214 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46837 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50116 * 243.74649 * 21 20 19 23 23 C 1.52998 * 117.49781 * 175.08842 * 21 20 19 24 24 N 1.32407 * 120.94862 * 359.97438 * 18 17 16 25 25 C 1.31666 * 121.79882 * 359.70978 * 24 18 17 26 26 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 28 28 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 29 29 H 0.96996 * 119.99759 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 31 31 H 1.08004 * 120.82067 * 0.02562 * 16 15 13 32 32 H 1.08000 * 120.37207 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.47385 * 299.99483 * 20 19 18 34 34 H 1.09000 * 109.47500 * 59.99839 * 20 19 18 35 35 H 1.08994 * 115.54888 * 29.41747 * 21 20 19 36 36 H 1.09005 * 117.49270 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.49852 * 145.01715 * 22 21 20 38 38 H 1.09003 * 117.49740 * 214.97610 * 23 21 20 39 39 H 1.08994 * 117.50123 * 0.02562 * 23 21 20 40 40 H 1.07994 * 119.68864 * 180.28454 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.1476 -2.2862 3.6038 10 1 3.1473 -0.1856 4.8160 11 1 1.1679 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1613 -2.4119 15 6 2.6448 -0.7127 -3.5609 16 6 2.7883 -0.0216 -4.7732 17 6 3.2578 -0.7137 -5.8704 18 6 3.5707 -2.0636 -5.7404 19 8 4.0317 -2.7485 -6.8147 20 6 4.3366 -4.1311 -6.6205 21 6 4.8389 -4.7321 -7.9348 22 6 3.9951 -5.8365 -8.5747 23 6 5.3288 -6.1813 -7.9073 24 7 3.4243 -2.6880 -4.5820 25 6 2.9854 -2.0647 -3.5084 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7089 1.1614 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 2.5382 1.0266 -4.8457 32 1 3.3804 -0.2138 -6.8198 33 1 5.1086 -4.2292 -5.8573 34 1 3.4390 -4.6595 -6.2993 35 1 5.3519 -4.0400 -8.6025 36 1 3.0820 -6.1345 -8.0594 37 1 3.9534 -5.8711 -9.6633 38 1 6.1639 -6.4426 -8.5572 39 1 5.2930 -6.7066 -6.9530 40 1 2.8833 -2.6064 -2.5797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066642333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:30 Heat of formation + Delta-G solvation = -18.080995 kcal Electronic energy + Delta-G solvation = -21886.370325 eV Core-core repulsion = 18474.315881 eV Total energy + Delta-G solvation = -3412.054444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81146 -39.16046 -38.08742 -36.88496 -34.88419 -32.64297 -32.44166 -30.99564 -28.80777 -27.62509 -25.28498 -24.16020 -23.50166 -22.78655 -21.24801 -20.97515 -19.66656 -18.69429 -17.82049 -17.13048 -16.37685 -15.94266 -15.69611 -15.10585 -14.85436 -14.66777 -14.37257 -14.10043 -13.69263 -13.44331 -13.31349 -13.01982 -12.60726 -12.40312 -11.99141 -11.77443 -11.67311 -11.51004 -11.11433 -10.98556 -10.89812 -10.77947 -10.33800 -10.32672 -10.26304 -9.98186 -9.88508 -9.15570 -9.06705 -8.61692 -8.56431 -7.95864 -6.14612 -4.24007 0.81371 1.16281 2.68729 3.22738 3.25604 3.30810 3.33376 3.40382 3.96783 4.07026 4.09900 4.35133 4.35807 4.48063 4.57381 4.84688 4.88943 4.91542 5.10640 5.18038 5.20950 5.25100 5.30859 5.38507 5.47868 5.54383 5.70079 5.73981 5.85287 6.17330 6.29441 6.80600 6.93912 7.06350 7.12049 7.39050 7.51991 7.66167 7.67287 7.88287 8.11912 8.58602 8.74071 9.02700 9.43413 10.91454 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.002906 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.516802 B = 9631.748505 C =10546.423642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.551 3.449 14 O -0.550 6.550 15 C -0.210 4.210 16 C 0.012 3.988 17 C -0.198 4.198 18 C 0.333 3.667 19 O -0.302 6.302 20 C 0.102 3.898 21 C -0.160 4.160 22 C -0.177 4.177 23 C -0.169 4.169 24 N -0.545 5.545 25 C 0.173 3.827 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.015 0.985 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -10.978 -19.147 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.336 3.664 14 O -0.430 6.430 15 C -0.216 4.216 16 C -0.014 4.014 17 C -0.218 4.218 18 C 0.154 3.846 19 O -0.209 6.209 20 C 0.026 3.974 21 C -0.178 4.178 22 C -0.214 4.214 23 C -0.206 4.206 24 N -0.268 5.268 25 C 0.016 3.984 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.203 -10.822 -19.230 22.921 hybrid contribution 0.200 -0.260 0.979 1.033 sum 6.403 -11.081 -18.250 22.291 Atomic orbital electron populations 1.22084 0.98283 0.99231 1.01023 1.18806 0.91145 0.94067 0.79735 0.93131 1.21240 1.32490 1.13277 0.90249 0.91954 1.24891 0.94786 0.94950 0.99091 1.69912 1.35849 1.22414 1.23831 0.86383 0.78611 0.79525 0.82517 1.19698 1.20869 1.20866 1.46500 1.64534 1.13475 1.10392 1.17874 0.78866 0.86710 0.82973 1.90739 1.51801 1.15514 1.84983 1.21186 1.07923 0.95849 0.96669 1.21556 0.89485 1.00671 0.89712 1.21008 1.07438 0.92084 1.01282 1.19982 0.89963 0.89151 0.85504 1.86161 1.78344 1.24641 1.31774 1.22150 1.00664 0.78654 0.95902 1.22167 1.04870 0.91988 0.98766 1.23123 0.95221 1.02508 1.00531 1.23000 0.98222 0.96289 1.03078 1.67312 1.20253 1.39817 0.99447 1.22696 0.89531 0.90807 0.95367 0.95385 0.89037 0.96547 0.92586 0.77930 0.82828 0.83671 0.90916 0.91217 0.86682 0.88446 0.88462 0.88196 0.88329 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.62 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.70 -14.45 5.02 -55.95 -0.28 -14.74 16 13 C 0.55 11.08 7.74 -12.43 -0.10 10.98 16 14 O -0.55 -13.06 16.08 5.29 0.09 -12.97 16 15 C -0.21 -3.35 5.89 -104.82 -0.62 -3.96 16 16 C 0.01 0.16 9.70 -38.92 -0.38 -0.22 16 17 C -0.20 -2.42 10.02 -39.34 -0.39 -2.82 16 18 C 0.33 4.39 7.49 -16.96 -0.13 4.26 16 19 O -0.30 -3.62 10.10 -18.20 -0.18 -3.81 16 20 C 0.10 1.01 5.58 37.16 0.21 1.21 16 21 C -0.16 -1.26 6.05 -90.62 -0.55 -1.81 16 22 C -0.18 -1.19 10.18 -26.70 -0.27 -1.46 16 23 C -0.17 -1.07 10.25 -26.70 -0.27 -1.34 16 24 N -0.54 -7.52 9.18 -12.96 -0.12 -7.64 16 25 C 0.17 2.44 10.71 -17.14 -0.18 2.25 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 6.79 6.59 -40.82 -0.27 6.52 16 31 H 0.15 2.04 7.73 -52.48 -0.41 1.64 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 35 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.17 2.00 6.41 -52.49 -0.34 1.67 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.74 343.33 -8.09 -38.83 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.46 Total: 6.04 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.91 Total: -2.31 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.23 Total: -46.37 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.10 Total: -16.78 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.74 -8.09 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds