Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31518 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47309 * 120.00017 * 8 6 4 11 11 H 1.48505 * 109.47010 * 240.00115 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21583 * 120.00271 * 359.97438 * 13 12 2 15 15 C 1.47615 * 119.99726 * 179.72725 * 13 12 2 16 16 C 1.40278 * 120.49847 * 180.27478 * 15 13 12 17 17 C 1.37952 * 118.35904 * 179.97438 * 16 15 13 18 18 C 1.39176 * 119.26224 * 0.02562 * 17 16 15 19 19 O 1.35501 * 119.52058 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99214 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.46837 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50116 * 243.74649 * 21 20 19 23 23 C 1.52998 * 117.49781 * 175.08842 * 21 20 19 24 24 N 1.32407 * 120.94862 * 359.97438 * 18 17 16 25 25 C 1.31666 * 121.79882 * 359.70978 * 24 18 17 26 26 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 28 28 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 29 29 H 0.96996 * 119.99759 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 31 31 H 1.08004 * 120.82067 * 0.02562 * 16 15 13 32 32 H 1.08000 * 120.37207 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.47385 * 299.99483 * 20 19 18 34 34 H 1.09000 * 109.47500 * 59.99839 * 20 19 18 35 35 H 1.08994 * 115.54888 * 29.41747 * 21 20 19 36 36 H 1.09005 * 117.49270 * 0.02562 * 22 21 20 37 37 H 1.08997 * 117.49852 * 145.01715 * 22 21 20 38 38 H 1.09003 * 117.49740 * 214.97610 * 23 21 20 39 39 H 1.08994 * 117.50123 * 0.02562 * 23 21 20 40 40 H 1.07994 * 119.68864 * 180.28454 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.1476 -2.2862 3.6038 10 1 3.1473 -0.1856 4.8160 11 1 1.1679 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1613 -2.4119 15 6 2.6448 -0.7127 -3.5609 16 6 2.7883 -0.0216 -4.7732 17 6 3.2578 -0.7137 -5.8704 18 6 3.5707 -2.0636 -5.7404 19 8 4.0317 -2.7485 -6.8147 20 6 4.3366 -4.1311 -6.6205 21 6 4.8389 -4.7321 -7.9348 22 6 3.9951 -5.8365 -8.5747 23 6 5.3288 -6.1813 -7.9073 24 7 3.4243 -2.6880 -4.5820 25 6 2.9854 -2.0647 -3.5084 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7089 1.1614 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 2.5382 1.0266 -4.8457 32 1 3.3804 -0.2138 -6.8198 33 1 5.1086 -4.2292 -5.8573 34 1 3.4390 -4.6595 -6.2993 35 1 5.3519 -4.0400 -8.6025 36 1 3.0820 -6.1345 -8.0594 37 1 3.9534 -5.8711 -9.6633 38 1 6.1639 -6.4426 -8.5572 39 1 5.2930 -6.7066 -6.9530 40 1 2.8833 -2.6064 -2.5797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066642333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = -38.269816 kcal Electronic energy + Delta-G solvation = -21887.245778 eV Core-core repulsion = 18474.315881 eV Total energy + Delta-G solvation = -3412.929897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91997 -40.53273 -39.14638 -37.64940 -36.75930 -34.43544 -33.62930 -32.35606 -30.45444 -28.54729 -27.33676 -25.40557 -24.60802 -23.28057 -22.90826 -21.66284 -21.35790 -19.76169 -19.35231 -18.18956 -17.76150 -17.28729 -17.03038 -16.42927 -16.09669 -15.93305 -15.72590 -15.25078 -15.02267 -14.50112 -14.36399 -14.36196 -14.19373 -13.82155 -13.63674 -12.99214 -12.89720 -12.74936 -12.60237 -12.37140 -12.27710 -12.24860 -12.11422 -11.43900 -11.19457 -11.08734 -11.06626 -10.94810 -10.67359 -10.56788 -9.91233 -9.56899 -8.17111 -6.34362 -0.35488 0.09783 1.45670 1.46920 1.58757 1.79217 1.88988 2.32185 2.54610 2.77207 2.84044 3.08589 3.13862 3.68446 3.72157 3.81791 3.91176 3.96553 4.03188 4.19523 4.23672 4.46219 4.56407 4.58338 4.70424 4.77711 4.78739 4.93027 5.00286 5.05871 5.10220 5.13775 5.23390 5.28937 5.43230 5.58721 5.68113 5.89116 6.08288 6.09388 6.58786 6.72490 6.88626 7.30500 7.46750 8.89542 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.002906 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.516802 B = 9631.748505 C =10546.423642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.698 5.698 13 C 0.552 3.448 14 O -0.594 6.594 15 C -0.230 4.230 16 C 0.011 3.989 17 C -0.187 4.187 18 C 0.333 3.667 19 O -0.302 6.302 20 C 0.099 3.901 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.160 4.160 24 N -0.550 5.550 25 C 0.183 3.817 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 -13.309 -20.321 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.346 5.346 13 C 0.340 3.660 14 O -0.477 6.477 15 C -0.236 4.236 16 C -0.014 4.014 17 C -0.207 4.207 18 C 0.154 3.846 19 O -0.209 6.209 20 C 0.024 3.976 21 C -0.191 4.191 22 C -0.213 4.213 23 C -0.196 4.196 24 N -0.274 5.274 25 C 0.026 3.974 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.345 -13.201 -20.442 25.418 hybrid contribution -0.114 0.438 1.206 1.288 sum 7.231 -12.763 -19.236 24.191 Atomic orbital electron populations 1.21911 0.98110 0.99631 0.99718 1.18412 0.91261 0.92068 0.81568 0.98000 1.21563 1.32576 1.13603 0.90641 0.90657 1.25797 0.94880 0.95587 1.02323 1.70058 1.36991 1.23901 1.24574 0.85286 0.78074 0.78528 0.78376 1.18264 1.21077 1.20471 1.46210 1.64716 1.14179 1.09527 1.18415 0.77656 0.86225 0.83716 1.90709 1.53679 1.17571 1.85763 1.20822 1.10607 0.96701 0.95433 1.21651 0.89278 1.00931 0.89562 1.21227 1.06022 0.91710 1.01785 1.20275 0.89080 0.89666 0.85579 1.86181 1.77800 1.25707 1.31203 1.22300 1.00512 0.77553 0.97188 1.22147 1.06142 0.92734 0.98059 1.23208 0.95385 1.01496 1.01211 1.23105 0.98460 0.94658 1.03415 1.67383 1.20586 1.39786 0.99607 1.22849 0.88495 0.89986 0.96116 0.93939 0.91328 0.96800 0.92534 0.75979 0.82608 0.80744 0.91189 0.91450 0.86560 0.88572 0.87396 0.86816 0.88051 0.80163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.15 16 2 C 0.27 13.94 2.56 44.24 0.11 14.05 16 3 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 4 C -0.55 -28.51 8.73 25.60 0.22 -28.29 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 8 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.70 -28.95 5.02 -449.19 -2.26 -31.21 16 13 C 0.55 22.56 7.74 86.72 0.67 23.23 16 14 O -0.59 -29.23 16.08 -3.98 -0.06 -29.30 16 15 C -0.23 -7.17 5.89 -19.99 -0.12 -7.29 16 16 C 0.01 0.31 9.70 22.70 0.22 0.53 16 17 C -0.19 -4.18 10.02 22.43 0.22 -3.95 16 18 C 0.33 8.08 7.49 84.83 0.64 8.71 16 19 O -0.30 -6.60 10.10 -88.02 -0.89 -7.49 16 20 C 0.10 1.79 5.58 71.98 0.40 2.19 16 21 C -0.17 -2.38 6.05 -10.79 -0.07 -2.45 16 22 C -0.18 -1.98 10.18 30.62 0.31 -1.67 16 23 C -0.16 -1.64 10.25 30.62 0.31 -1.32 16 24 N -0.55 -14.15 9.18 -307.80 -2.82 -16.98 16 25 C 0.18 4.88 10.71 85.03 0.91 5.79 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 28 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.40 13.84 6.59 -92.71 -0.61 13.23 16 31 H 0.16 4.09 7.73 -2.91 -0.02 4.06 16 32 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.07 1.25 7.83 -2.39 -0.02 1.23 16 35 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.11 8.03 -2.38 -0.02 1.09 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.18 4.06 6.41 -2.91 -0.02 4.05 16 Total: -1.00 -66.92 343.33 1.64 -65.28 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.45 Total: 23.44 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.96 Total: 4.60 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.84 Total: -100.15 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.95 Total: -36.79 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -66.92 1.64 -65.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.012 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds