Wall clock time and date at job start Tue Mar 31 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21577 * 120.00299 * 359.97438 * 13 12 2 15 15 C 1.47623 * 120.00036 * 180.02562 * 13 12 2 16 16 C 1.40283 * 120.49979 * 180.02562 * 15 13 12 17 17 C 1.37953 * 118.35391 * 179.97438 * 16 15 13 18 18 C 1.39167 * 119.26753 * 0.02562 * 17 16 15 19 19 O 1.35493 * 119.52399 * 179.97438 * 18 17 16 20 20 C 1.42908 * 116.99892 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47273 * 179.97438 * 20 19 18 22 22 C 1.52995 * 117.49659 * 243.74778 * 21 20 19 23 23 C 1.52995 * 117.50002 * 175.08515 * 21 20 19 24 24 N 1.32409 * 120.94503 * 359.97438 * 18 17 16 25 25 C 1.31661 * 121.80060 * 359.70196 * 24 18 17 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.07998 * 120.81798 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.36217 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.46558 * 299.99977 * 20 19 18 34 34 H 1.08997 * 109.47117 * 59.99374 * 20 19 18 35 35 H 1.09003 * 115.54713 * 29.41108 * 21 20 19 36 36 H 1.09002 * 117.50228 * 359.97438 * 22 21 20 37 37 H 1.09001 * 117.50225 * 145.01912 * 22 21 20 38 38 H 1.09001 * 117.49784 * 214.97563 * 23 21 20 39 39 H 1.09005 * 117.49546 * 359.97438 * 23 21 20 40 40 H 1.08004 * 119.68791 * 180.29099 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8583 1.1617 2.4116 15 6 2.6396 -0.7138 3.5624 16 6 2.7771 -0.0242 4.7763 17 6 3.2408 -0.7178 5.8749 18 6 3.5551 -2.0672 5.7446 19 8 4.0115 -2.7533 6.8202 20 6 4.3171 -4.1358 6.6259 21 6 4.8150 -4.7378 7.9414 22 6 6.2547 -5.2538 7.9819 23 6 5.0867 -6.2432 7.9712 24 7 3.4145 -2.6902 4.5847 25 6 2.9695 -2.0685 3.5128 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 2.5252 1.0235 4.8491 32 1 3.3594 -0.2188 6.8253 33 1 3.4207 -4.6637 6.3005 34 1 5.0922 -4.2332 5.8658 35 1 4.4187 -4.2798 8.8477 36 1 6.8472 -5.1647 7.0713 37 1 6.8056 -5.1357 8.9150 38 1 4.8697 -6.7755 8.8973 39 1 4.9104 -6.8047 7.0537 40 1 2.8636 -2.6112 2.5850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066642334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:32 Heat of formation + Delta-G solvation = -17.987730 kcal Electronic energy + Delta-G solvation = -21886.504514 eV Core-core repulsion = 18474.454114 eV Total energy + Delta-G solvation = -3412.050400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81205 -39.16058 -38.08746 -36.88485 -34.88319 -32.64202 -32.44107 -30.99514 -28.80652 -27.62494 -25.28101 -24.15947 -23.50175 -22.78577 -21.24624 -20.97440 -19.66552 -18.69458 -17.81959 -17.12920 -16.38393 -15.92754 -15.68988 -15.12361 -14.85397 -14.66723 -14.31894 -14.16188 -13.66365 -13.45254 -13.32867 -13.01390 -12.60087 -12.39658 -11.99146 -11.78384 -11.64802 -11.51528 -11.12043 -10.97594 -10.89666 -10.77532 -10.36681 -10.32546 -10.25355 -9.98112 -9.88478 -9.15396 -9.08170 -8.61516 -8.55812 -7.95745 -6.14077 -4.23713 0.81414 1.16283 2.68690 3.24709 3.25874 3.30371 3.31514 3.40458 3.96782 4.07012 4.09891 4.35328 4.35891 4.48136 4.57409 4.84696 4.89021 4.91568 5.10671 5.18293 5.21060 5.25237 5.30569 5.38545 5.48020 5.54365 5.70189 5.74000 5.85290 6.17341 6.29449 6.80754 6.94128 7.06382 7.12127 7.39192 7.51986 7.66118 7.67299 7.88409 8.12225 8.58666 8.73938 9.02719 9.43559 10.91868 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.002922 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.616329 B = 9581.214502 C =10544.394235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.551 3.449 14 O -0.550 6.550 15 C -0.210 4.210 16 C 0.012 3.988 17 C -0.198 4.198 18 C 0.333 3.667 19 O -0.302 6.302 20 C 0.102 3.898 21 C -0.160 4.160 22 C -0.177 4.177 23 C -0.169 4.169 24 N -0.545 5.545 25 C 0.173 3.827 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -10.840 19.005 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.349 5.349 13 C 0.336 3.664 14 O -0.430 6.430 15 C -0.216 4.216 16 C -0.014 4.014 17 C -0.218 4.218 18 C 0.154 3.846 19 O -0.209 6.209 20 C 0.026 3.974 21 C -0.178 4.178 22 C -0.214 4.214 23 C -0.206 4.206 24 N -0.268 5.268 25 C 0.016 3.984 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.647 -10.675 19.081 22.852 hybrid contribution 0.211 -0.281 -0.969 1.030 sum 6.858 -10.956 18.112 22.251 Atomic orbital electron populations 1.22086 0.98288 0.99226 1.01019 1.18794 0.91133 0.94052 0.79701 0.93142 1.21166 1.32649 1.13330 0.90281 0.92062 1.24886 0.94764 0.94947 0.99060 1.69891 1.35685 1.22381 1.24048 0.86494 0.79182 0.79588 0.81754 1.21121 1.20153 1.20131 1.46497 1.64530 1.13465 1.10408 1.17874 0.78845 0.86720 0.82984 1.90737 1.51759 1.15515 1.85021 1.21189 1.08022 0.95786 0.96631 1.21557 0.89494 1.00682 0.89691 1.21006 1.07478 0.92061 1.01273 1.19977 0.89956 0.89172 0.85490 1.86159 1.78474 1.24660 1.31629 1.22151 1.00863 0.78607 0.95747 1.22165 0.99861 0.96789 0.98975 1.23124 0.90934 1.03592 1.03721 1.23001 1.02662 0.91131 1.03807 1.67310 1.20138 1.39919 0.99465 1.22694 0.89500 0.90819 0.95391 0.96560 0.89028 0.95389 0.92469 0.77937 0.82828 0.83672 0.90929 0.91205 0.86684 0.88437 0.88455 0.88203 0.88331 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.66 2.56 -69.09 -0.18 6.49 16 3 H 0.05 1.46 7.58 -51.92 -0.39 1.07 16 4 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.70 -14.46 5.02 -55.95 -0.28 -14.74 16 13 C 0.55 11.09 7.74 -12.43 -0.10 10.99 16 14 O -0.55 -13.06 16.08 5.30 0.09 -12.98 16 15 C -0.21 -3.35 5.89 -104.82 -0.62 -3.97 16 16 C 0.01 0.16 9.70 -38.92 -0.38 -0.22 16 17 C -0.20 -2.42 10.02 -39.34 -0.39 -2.82 16 18 C 0.33 4.39 7.49 -16.96 -0.13 4.26 16 19 O -0.30 -3.63 10.10 -18.17 -0.18 -3.81 16 20 C 0.10 1.01 5.58 37.16 0.21 1.21 16 21 C -0.16 -1.26 6.05 -90.62 -0.55 -1.81 16 22 C -0.18 -1.20 10.18 -26.69 -0.27 -1.47 16 23 C -0.17 -1.07 10.25 -26.69 -0.27 -1.34 16 24 N -0.54 -7.52 9.18 -12.97 -0.12 -7.64 16 25 C 0.17 2.44 10.71 -17.14 -0.18 2.25 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.79 6.59 -40.82 -0.27 6.52 16 31 H 0.15 2.04 7.73 -52.49 -0.41 1.64 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 35 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.17 2.00 6.41 -52.48 -0.34 1.66 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.71 343.33 -8.09 -38.80 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.46 Total: 6.11 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.91 Total: -2.32 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.23 Total: -46.39 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.10 Total: -16.78 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.71 -8.09 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.813 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds